Wall clock time and date at job start Mon Mar 30 2020 07:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.72573 * 9 7 2 12 12 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 13 13 C 1.38262 * 119.93460 * 279.72090 * 12 9 7 14 14 C 1.38262 * 120.05936 * 179.76623 * 13 12 9 15 15 Cl 1.73600 * 120.03002 * 180.27709 * 14 13 12 16 16 C 1.38788 * 119.94022 * 0.48936 * 14 13 12 17 17 O 1.35946 * 120.06843 * 179.78504 * 16 14 13 18 18 C 1.38790 * 119.87021 * 359.76755 * 16 14 13 19 19 Cl 1.73605 * 120.03050 * 180.02562 * 18 16 14 20 20 C 1.38257 * 119.93626 * 99.99925 * 12 9 7 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.00906 * 110.99835 * 296.05213 * 11 9 7 23 23 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 24 24 H 1.07995 * 119.96597 * 0.02562 * 13 12 9 25 25 H 0.96695 * 114.00560 * 269.98442 * 17 16 14 26 26 H 1.07995 * 119.97213 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6283 -2.5592 0.8921 11 7 0.4010 -2.5739 -1.1963 12 6 2.2302 -3.6446 -0.0079 13 6 2.8270 -4.0345 -1.1926 14 6 3.7294 -5.0819 -1.2016 15 17 4.4837 -5.5661 -2.6883 16 6 4.0284 -5.7487 -0.0217 17 8 4.9121 -6.7818 -0.0282 18 6 3.4238 -5.3586 1.1651 19 17 3.7953 -6.1893 2.6435 20 6 2.5257 -4.3073 1.1689 21 1 -0.4851 0.8401 0.0004 22 1 -0.3063 -1.8543 -1.1827 23 1 0.9551 -2.5202 -2.0378 24 1 2.5911 -3.5176 -2.1111 25 1 4.5060 -7.6458 -0.1816 26 1 2.0550 -4.0033 2.0921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095665857.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:00 Heat of formation + Delta-G solvation = -40.660066 kcal Electronic energy + Delta-G solvation = -15005.751831 eV Core-core repulsion = 12135.829560 eV Total energy + Delta-G solvation = -2869.922271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.64268 -37.01505 -36.48872 -36.11542 -34.31461 -31.50870 -30.34140 -28.75102 -26.02514 -23.26357 -22.55862 -20.40096 -18.40459 -16.73146 -16.32472 -15.86590 -15.29972 -14.78222 -14.36280 -13.96916 -13.33054 -12.93435 -12.68235 -12.28359 -12.10606 -11.82852 -11.40575 -11.18835 -11.07407 -10.82012 -10.75606 -10.59626 -10.37683 -10.03852 -9.87146 -8.80104 -8.41142 -8.14120 -7.36634 -6.23303 -4.40685 1.35952 1.38628 2.06737 2.55208 3.14880 3.24453 3.29215 3.79505 4.20332 4.26002 5.00030 5.27845 5.32972 5.65942 5.74135 5.85529 6.27463 6.31310 6.61593 6.73407 6.94643 7.46030 7.61667 7.63940 7.89399 8.49055 8.76055 8.94322 9.32176 10.74823 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.006663 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.428742 B = 4201.390208 C = 4883.434635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.241 3.759 10 H 0.055 0.945 11 N -0.850 5.850 12 C -0.005 4.005 13 C -0.082 4.082 14 C -0.049 4.049 15 Cl -0.065 7.065 16 C 0.091 3.909 17 O -0.479 6.479 18 C -0.048 4.048 19 Cl -0.065 7.065 20 C -0.098 4.098 21 H 0.267 0.733 22 H 0.360 0.640 23 H 0.312 0.688 24 H 0.140 0.860 25 H 0.384 0.616 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -10.396 -0.745 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.131 3.869 10 H 0.072 0.928 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.101 4.101 14 C -0.077 4.077 15 Cl -0.036 7.036 16 C 0.045 3.955 17 O -0.288 6.288 18 C -0.075 4.075 19 Cl -0.036 7.036 20 C -0.117 4.117 21 H 0.077 0.923 22 H 0.177 0.823 23 H 0.122 0.878 24 H 0.158 0.842 25 H 0.240 0.760 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.014 -10.678 -0.358 11.802 hybrid contribution 0.663 1.460 -0.223 1.619 sum 5.677 -9.218 -0.581 10.841 Atomic orbital electron populations 1.69733 1.05877 1.27432 1.49882 1.25000 0.94962 0.99435 0.93994 0.86421 0.80211 0.82961 0.77800 1.19606 1.20818 1.20724 1.21800 0.93793 0.90656 1.52642 0.92289 1.18054 0.88799 0.87588 0.92479 0.92759 1.59554 1.18372 1.56364 1.03746 1.20506 0.95199 0.94581 0.90361 1.20938 0.94363 0.94684 1.00132 1.21167 0.99779 1.00323 0.86405 1.98339 1.81230 1.91291 1.32764 1.17600 0.94647 0.93526 0.89765 1.84886 1.33027 1.16628 1.94248 1.21106 1.00767 0.98839 0.86835 1.98339 1.93936 1.77851 1.33519 1.21027 0.96993 0.93744 0.99934 0.92283 0.82335 0.87803 0.84212 0.76046 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.21 11.52 55.43 0.64 -22.57 15 2 C 0.07 1.77 5.38 -17.82 -0.10 1.67 15 3 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.55 -13.85 8.71 -34.44 -0.30 -14.15 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.24 5.52 2.95 -70.02 -0.21 5.31 15 10 H 0.05 1.35 8.00 -51.93 -0.42 0.94 15 11 N -0.85 -18.68 9.01 -6.65 -0.06 -18.74 15 12 C -0.01 -0.10 4.90 -104.61 -0.51 -0.61 15 13 C -0.08 -1.49 9.07 -39.56 -0.36 -1.85 15 14 C -0.05 -0.82 6.33 -39.37 -0.25 -1.07 15 15 Cl -0.07 -0.95 28.50 -51.86 -1.48 -2.43 15 16 C 0.09 1.46 6.69 -39.17 -0.26 1.20 15 17 O -0.48 -6.63 12.42 -19.57 -0.24 -6.87 15 18 C -0.05 -0.79 6.33 -39.37 -0.25 -1.04 15 19 Cl -0.07 -0.95 28.50 -51.86 -1.48 -2.42 15 20 C -0.10 -1.76 9.45 -39.56 -0.37 -2.14 15 21 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 22 H 0.36 8.55 7.06 -39.29 -0.28 8.27 15 23 H 0.31 6.48 7.33 -39.29 -0.29 6.19 15 24 H 0.14 2.50 6.65 -52.49 -0.35 2.15 15 25 H 0.38 3.64 9.06 45.56 0.41 4.05 15 26 H 0.14 2.40 8.03 -52.49 -0.42 1.97 15 LS Contribution 262.80 15.07 3.96 3.96 Total: -1.00 -25.99 262.80 -7.17 -33.16 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.88 Total: 13.48 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.61 Total: -12.69 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.58 Total: -41.31 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.24 Total: -6.87 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -2.96 Total: -4.86 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.99 -7.17 -33.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095665857.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.505 kcal (2) G-P(sol) polarization free energy of solvation -25.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds