Wall clock time and date at job start Mon Mar 30 2020 07:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47362 * 90.00053 * 3 2 1 5 5 H 1.48500 * 109.46807 * 210.00014 * 3 2 1 6 6 H 1.48499 * 109.47424 * 329.99586 * 3 2 1 7 7 C 1.37872 * 119.99638 * 179.72407 * 2 1 3 8 8 H 1.07997 * 120.00598 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99931 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.46622 * 300.00023 * 9 7 2 11 11 N 1.46898 * 109.46810 * 60.00041 * 9 7 2 12 12 C 1.50699 * 109.47142 * 179.97438 * 9 7 2 13 13 C 1.38732 * 120.02300 * 286.29503 * 12 9 7 14 14 O 1.35899 * 120.04489 * 0.02562 * 13 12 9 15 15 C 1.38704 * 119.91647 * 180.02562 * 13 12 9 16 16 C 1.38282 * 119.95772 * 359.97438 * 15 13 12 17 17 Cl 1.73599 * 119.98159 * 180.02562 * 16 15 13 18 18 C 1.38354 * 120.04132 * 359.97438 * 16 15 13 19 19 C 1.38245 * 120.01790 * 106.02277 * 12 9 7 20 20 Cl 1.73608 * 119.98142 * 359.97438 * 19 12 9 21 21 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 22 22 H 1.00896 * 111.00442 * 51.70952 * 11 9 7 23 23 H 1.00905 * 110.99793 * 175.66826 * 11 9 7 24 24 H 0.96696 * 113.99852 * 89.99992 * 14 13 12 25 25 H 1.08000 * 120.02052 * 180.02562 * 15 13 12 26 26 H 1.07995 * 119.95511 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4467 2.6527 -0.7001 7 6 2.0044 -1.1940 0.0058 8 1 1.4645 -2.1293 0.0098 9 6 3.5115 -1.1941 0.0063 10 1 3.8752 -0.6844 -0.8859 11 7 4.0007 -0.4961 1.2028 12 6 4.0138 -2.6149 0.0137 13 6 3.9269 -3.3759 1.1704 14 8 3.3885 -2.8412 2.2978 15 6 4.3904 -4.6832 1.1749 16 6 4.9375 -5.2258 0.0266 17 17 5.5171 -6.8621 0.0313 18 6 5.0223 -4.4657 -1.1263 19 6 4.5562 -3.1626 -1.1339 20 17 4.6581 -2.2134 -2.5839 21 1 -0.4850 0.8401 -0.0004 22 1 3.5706 -0.8648 2.0377 23 1 5.0068 -0.5436 1.2631 24 1 2.4335 -2.9706 2.3771 25 1 4.3232 -5.2772 2.0743 26 1 5.4495 -4.8909 -2.0224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095668887.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:25 Heat of formation + Delta-G solvation = -53.438046 kcal Electronic energy + Delta-G solvation = -15416.190779 eV Core-core repulsion = 12545.714413 eV Total energy + Delta-G solvation = -2870.476366 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.17905 -38.24856 -37.82855 -36.74333 -36.37488 -33.91456 -31.34794 -30.65118 -28.18756 -24.63566 -23.86107 -21.95423 -19.54501 -18.97251 -17.51898 -17.45199 -16.78851 -16.28900 -15.77477 -15.54002 -15.40013 -14.58382 -14.42005 -13.93492 -13.86360 -13.34101 -13.27876 -12.68314 -12.50700 -12.25724 -12.10968 -11.76694 -11.73697 -11.59281 -11.24526 -10.71459 -9.78208 -9.65188 -9.22294 -8.24094 -6.35677 -0.06226 -0.03123 0.75462 1.29402 1.52641 1.57373 1.72888 2.28083 2.53179 3.09663 3.24622 3.86171 3.90906 3.92432 4.28952 4.36623 4.46675 4.87195 4.91848 5.01057 5.33686 5.36660 5.59689 6.14084 6.48509 6.70062 6.80993 7.05037 7.40726 8.87642 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.007439 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.229947 B = 3762.848212 C = 4287.623038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.326 1.326 7 C -0.504 4.504 8 H 0.040 0.960 9 C 0.222 3.778 10 H 0.051 0.949 11 N -0.842 5.842 12 C -0.112 4.112 13 C 0.133 3.867 14 O -0.488 6.488 15 C -0.130 4.130 16 C -0.021 4.021 17 Cl -0.045 7.045 18 C -0.110 4.110 19 C -0.022 4.022 20 Cl -0.057 7.057 21 H 0.264 0.736 22 H 0.352 0.648 23 H 0.325 0.675 24 H 0.408 0.592 25 H 0.162 0.838 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.619 -10.700 0.668 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.162 4.162 3 Si 0.814 3.186 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.112 3.888 10 H 0.068 0.932 11 N -0.377 5.377 12 C -0.115 4.115 13 C 0.087 3.913 14 O -0.301 6.301 15 C -0.149 4.149 16 C -0.048 4.048 17 Cl -0.016 7.016 18 C -0.130 4.130 19 C -0.050 4.050 20 Cl -0.028 7.028 21 H 0.073 0.927 22 H 0.170 0.830 23 H 0.137 0.863 24 H 0.268 0.732 25 H 0.179 0.821 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.765 -9.848 0.374 15.347 hybrid contribution -0.240 -0.226 -0.036 0.332 sum 11.525 -10.075 0.338 15.311 Atomic orbital electron populations 1.70041 1.08114 1.28026 1.51739 1.25608 0.94987 1.02793 0.92772 0.85088 0.77651 0.77688 0.78138 1.20290 1.18942 1.25693 1.20758 0.89074 0.92800 1.51562 0.94209 1.18475 0.94016 0.84491 0.91858 0.93157 1.59222 1.09980 1.61404 1.07045 1.21497 0.97222 1.00762 0.92056 1.17911 0.97512 0.90174 0.85666 1.84579 1.28956 1.78923 1.37606 1.21486 1.00289 0.94263 0.98865 1.20389 1.02282 0.87599 0.94547 1.98368 1.87062 1.17485 1.98730 1.21001 1.01336 0.91466 0.99164 1.20571 1.03064 0.92964 0.88409 1.98355 1.96817 1.72270 1.35350 0.92710 0.82992 0.86288 0.73179 0.82064 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.96 21.45 0.30 -56.14 15 2 C 0.04 2.15 5.47 84.65 0.46 2.61 15 3 Si 0.98 48.31 26.02 68.60 1.78 50.09 15 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 15 5 H -0.26 -12.60 6.55 99.48 0.65 -11.95 15 6 H -0.33 -16.33 7.11 99.48 0.71 -15.63 15 7 C -0.50 -26.45 8.97 25.60 0.23 -26.22 15 8 H 0.04 2.28 7.98 -2.91 -0.02 2.26 15 9 C 0.22 9.67 2.07 43.43 0.09 9.76 15 10 H 0.05 2.34 5.41 -2.39 -0.01 2.33 15 11 N -0.84 -33.99 6.58 -174.94 -1.15 -35.14 15 12 C -0.11 -4.13 4.82 -19.74 -0.10 -4.23 15 13 C 0.13 4.29 6.46 22.50 0.15 4.44 15 14 O -0.49 -15.10 10.35 -92.41 -0.96 -16.06 15 15 C -0.13 -3.46 9.77 22.39 0.22 -3.24 15 16 C -0.02 -0.53 6.32 22.31 0.14 -0.39 15 17 Cl -0.05 -0.96 28.95 -2.72 -0.08 -1.03 15 18 C -0.11 -3.02 9.61 22.33 0.21 -2.81 15 19 C -0.02 -0.75 6.31 22.31 0.14 -0.61 15 20 Cl -0.06 -1.91 27.06 -2.72 -0.07 -1.99 15 21 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 22 H 0.35 13.88 6.28 -89.70 -0.56 13.32 15 23 H 0.32 11.56 8.98 -89.69 -0.81 10.75 15 24 H 0.41 11.40 9.06 -74.06 -0.67 10.73 15 25 H 0.16 3.50 8.06 -2.91 -0.02 3.48 15 26 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -60.92 255.64 0.54 -60.37 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.83 Total: 20.57 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 1.55 Total: -20.69 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -0.85 Total: -91.27 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.96 Total: -16.06 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.78 Total: 50.09 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.15 Total: -3.02 kcal Total: -60.92 0.54 -60.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095668887.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.936 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds