Wall clock time and date at job start Mon Mar 30 2020 07:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99576 * 2 1 4 4 H 1.48504 * 109.46999 * 269.99951 * 3 2 1 5 5 H 1.48499 * 109.46840 * 30.00144 * 3 2 1 6 6 H 1.48504 * 109.46902 * 150.00478 * 3 2 1 7 7 C 1.37877 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99940 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47092 * 60.00503 * 9 7 2 11 11 N 1.46900 * 109.47370 * 299.99801 * 9 7 2 12 12 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 13 13 C 1.38194 * 120.01746 * 99.97767 * 12 9 7 14 14 C 1.38327 * 120.07040 * 180.02562 * 13 12 9 15 15 Cl 1.73596 * 119.95779 * 179.97438 * 14 13 12 16 16 C 1.38398 * 120.08873 * 359.95537 * 14 13 12 17 17 C 1.38209 * 120.03283 * 0.04725 * 16 14 13 18 18 Cl 1.73593 * 120.03299 * 180.25690 * 17 16 14 19 19 C 1.38654 * 120.01649 * 280.00129 * 12 9 7 20 20 O 1.35946 * 120.04743 * 0.02562 * 19 12 9 21 21 H 0.96998 * 120.00972 * 359.97438 * 1 2 3 22 22 H 1.00897 * 110.99576 * 300.00796 * 11 9 7 23 23 H 1.00902 * 110.99481 * 63.95264 * 11 9 7 24 24 H 1.08010 * 119.96238 * 0.02562 * 13 12 9 25 25 H 1.08000 * 119.98278 * 180.02562 * 16 14 13 26 26 H 0.96702 * 113.99651 * 269.97831 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8904 11 7 0.4071 -2.5773 1.1992 12 6 2.2305 -3.6445 -0.0018 13 6 2.5231 -4.3052 1.1762 14 6 3.4223 -5.3563 1.1763 15 17 3.7882 -6.1838 2.6579 16 6 4.0303 -5.7495 -0.0031 17 6 3.7406 -5.0915 -1.1835 18 17 4.4982 -5.5889 -2.6640 19 6 2.8388 -4.0356 -1.1848 20 8 2.5529 -3.3862 -2.3444 21 1 -0.4851 0.8399 0.0004 22 1 0.9654 -2.5260 2.0380 23 1 -0.3003 -1.8578 1.1911 24 1 2.0492 -4.0005 2.0976 25 1 4.7318 -6.5707 -0.0011 26 1 1.8089 -3.7636 -2.8333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095672146.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:29 Heat of formation + Delta-G solvation = -37.321185 kcal Electronic energy + Delta-G solvation = -15196.251014 eV Core-core repulsion = 12326.473528 eV Total energy + Delta-G solvation = -2869.777486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.62224 -36.81862 -36.36344 -35.76928 -34.65697 -31.74781 -29.48859 -29.08727 -26.12270 -23.46686 -22.16634 -20.31803 -18.07351 -16.72274 -16.30128 -16.04428 -15.02934 -14.74623 -14.33649 -13.87255 -13.28774 -12.83562 -12.51117 -12.42242 -12.00671 -11.94062 -11.35003 -11.15157 -10.98302 -10.83607 -10.70512 -10.52639 -10.29192 -10.05933 -9.68314 -8.76420 -8.32885 -8.10151 -7.36773 -6.17211 -4.31278 1.30902 1.50611 2.08019 2.55975 3.21486 3.28362 3.32487 3.78833 4.30764 4.53219 5.05499 5.13401 5.36920 5.56934 5.74518 6.08659 6.19263 6.31372 6.54749 6.74104 6.95496 7.45180 7.68954 7.94068 8.07677 8.53234 8.80501 8.95114 9.39227 10.82298 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.007502 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.401819 B = 3731.454786 C = 4639.390075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.249 3.751 10 H 0.056 0.944 11 N -0.853 5.853 12 C -0.031 4.031 13 C -0.084 4.084 14 C -0.035 4.035 15 Cl -0.076 7.076 16 C -0.118 4.118 17 C -0.055 4.055 18 Cl -0.066 7.066 19 C 0.121 3.879 20 O -0.469 6.469 21 H 0.266 0.734 22 H 0.313 0.687 23 H 0.360 0.640 24 H 0.144 0.856 25 H 0.136 0.864 26 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -10.258 -0.066 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.074 0.926 9 C 0.139 3.861 10 H 0.074 0.926 11 N -0.383 5.383 12 C -0.033 4.033 13 C -0.104 4.104 14 C -0.062 4.062 15 Cl -0.047 7.047 16 C -0.137 4.137 17 C -0.083 4.083 18 Cl -0.037 7.037 19 C 0.074 3.926 20 O -0.278 6.278 21 H 0.076 0.924 22 H 0.122 0.878 23 H 0.177 0.823 24 H 0.162 0.838 25 H 0.154 0.846 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.958 -10.608 -0.194 11.711 hybrid contribution 0.658 1.505 -0.034 1.643 sum 5.616 -9.103 -0.228 10.698 Atomic orbital electron populations 1.69716 1.05816 1.27372 1.50513 1.24966 0.94954 0.99321 0.94211 0.86470 0.79778 0.82701 0.78365 1.20414 1.21154 1.19866 1.21637 0.93582 0.90391 1.51766 0.92579 1.17856 0.88698 0.87480 0.92069 0.92594 1.59593 1.18477 1.56327 1.03948 1.20857 0.96052 0.95904 0.90445 1.20959 0.95981 0.93584 0.99830 1.20698 1.01020 0.97597 0.86853 1.98339 1.93987 1.78129 1.34250 1.20514 1.02150 1.01559 0.89496 1.21134 1.01041 0.98157 0.87940 1.98336 1.80739 1.90641 1.34014 1.18077 0.95975 0.90935 0.87605 1.84936 1.54497 1.55781 1.32585 0.92373 0.87760 0.82296 0.83803 0.84580 0.75976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 11.54 55.43 0.64 -23.10 15 2 C 0.07 1.77 5.38 -17.82 -0.10 1.68 15 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.53 -13.89 8.70 -34.44 -0.30 -14.19 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.25 5.79 2.60 -70.02 -0.18 5.61 15 10 H 0.06 1.42 7.85 -51.93 -0.41 1.01 15 11 N -0.85 -18.84 8.67 -6.65 -0.06 -18.90 15 12 C -0.03 -0.62 5.04 -104.48 -0.53 -1.15 15 13 C -0.08 -1.53 9.03 -39.56 -0.36 -1.89 15 14 C -0.03 -0.56 6.32 -39.49 -0.25 -0.81 15 15 Cl -0.08 -1.06 28.95 -51.86 -1.50 -2.56 15 16 C -0.12 -1.81 9.61 -39.53 -0.38 -2.19 15 17 C -0.06 -0.91 6.33 -39.36 -0.25 -1.16 15 18 Cl -0.07 -0.97 28.50 -51.86 -1.48 -2.44 15 19 C 0.12 2.26 6.66 -39.20 -0.26 2.00 15 20 O -0.47 -8.64 12.20 -19.57 -0.24 -8.88 15 21 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 22 H 0.31 6.55 7.28 -39.29 -0.29 6.27 15 23 H 0.36 8.62 7.08 -39.29 -0.28 8.34 15 24 H 0.14 2.55 6.25 -52.48 -0.33 2.22 15 25 H 0.14 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.38 5.37 9.06 45.56 0.41 5.78 15 LS Contribution 262.03 15.07 3.95 3.95 Total: -1.00 -26.71 262.03 -7.16 -33.87 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.85 Total: 14.41 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.60 Total: -12.10 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.58 Total: -42.00 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.24 Total: -8.88 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -2.98 Total: -5.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.71 -7.16 -33.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095672146.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.447 kcal (2) G-P(sol) polarization free energy of solvation -26.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds