Wall clock time and date at job start Mon Mar 30 2020 07:14:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86806 * 119.99658 * 2 1
4 4 H 1.48502 * 109.47309 * 269.99891 * 3 2 1
5 5 H 1.48494 * 109.47365 * 30.00335 * 3 2 1
6 6 H 1.48507 * 109.46819 * 150.00173 * 3 2 1
7 7 C 1.37873 * 120.00378 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99734 * 0.02562 * 7 2 1
9 9 C 1.50705 * 120.00337 * 179.97438 * 7 2 1
10 10 H 1.09001 * 109.46916 * 60.00261 * 9 7 2
11 11 N 1.46898 * 109.46868 * 300.00384 * 9 7 2
12 12 C 1.50700 * 109.47212 * 180.02562 * 9 7 2
13 13 C 1.33399 * 125.19268 * 259.98130 * 12 9 7
14 14 C 1.38470 * 114.90859 * 179.77238 * 13 12 9
15 15 Br 1.89098 * 122.54493 * 180.24710 * 14 13 12
16 16 C 1.33430 * 114.90709 * 0.42675 * 14 13 12
17 17 S 1.75877 * 125.19613 * 79.97505 * 12 9 7
18 18 H 0.97001 * 119.99785 * 359.97438 * 1 2 3
19 19 H 1.00904 * 110.99295 * 176.04512 * 11 9 7
20 20 H 1.00897 * 111.00144 * 299.99292 * 11 9 7
21 21 H 1.07995 * 122.54360 * 359.97438 * 13 12 9
22 22 H 1.08002 * 125.20586 * 179.86604 * 16 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0466 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0014
9 6 3.5116 -1.1940 -0.0011
10 1 3.8753 -0.6804 0.8889
11 7 4.0008 -0.5011 -1.2005
12 6 4.0140 -2.6148 -0.0023
13 6 4.4495 -3.2771 1.0707
14 6 4.8584 -4.5774 0.8271
15 35 5.5076 -5.7125 2.1931
16 6 4.7631 -4.9674 -0.4454
17 16 4.1155 -3.6529 -1.4183
18 1 -0.4850 0.8401 0.0004
19 1 5.0073 -0.4310 -1.1923
20 1 3.6770 -0.9584 -2.0396
21 1 4.4778 -2.8339 2.0551
22 1 5.0371 -5.9427 -0.8199
RHF calculation, no. of doubly occupied orbitals= 33
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000095673776.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:14:49
Heat of formation + Delta-G solvation = 31.263010 kcal
Electronic energy + Delta-G solvation = -10279.518363 eV
Core-core repulsion = 8200.330931 eV
Total energy + Delta-G solvation = -2079.187432 eV
No. of doubly occupied orbitals = 33
Molecular weight
(most abundant/longest-lived isotopes) = 260.952 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-37.78869 -34.90324 -31.94007 -30.71363 -28.56620 -26.31359 -23.59334 -20.87877
-18.85139 -16.93420 -16.80194 -15.25233 -14.86937 -14.08417 -13.29883 -13.08792
-12.82859 -12.42757 -12.12353 -11.54215 -10.93807 -10.73252 -10.65000 -10.25572
-10.07349 -9.85910 -9.42851 -8.63869 -8.20776 -8.12360 -7.86639 -6.10575
-4.23169 1.25739 1.41651 2.12739 2.62837 2.89472 3.50938 3.55059
3.67013 4.55799 5.12982 5.17713 5.56096 5.73306 5.82245 6.23144
6.44558 6.58507 6.81792 7.40523 7.94104 8.15317 8.51253 8.87630
9.50206 10.98387
Molecular weight = 260.95amu
Principal moments of inertia in cm(-1)
A = 0.040902 B = 0.006416 C = 0.006087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 684.400492 B = 4362.897767 C = 4598.904843
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.085 3.915
3 Si 0.936 3.064
4 H -0.278 1.278
5 H -0.316 1.316
6 H -0.273 1.273
7 C -0.523 4.523
8 H 0.074 0.926
9 C 0.244 3.756
10 H 0.065 0.935
11 N -0.839 5.839
12 C -0.128 4.128
13 C -0.157 4.157
14 C -0.082 4.082
15 Br -0.050 7.050
16 C -0.218 4.218
17 S 0.131 5.869
18 H 0.266 0.734
19 H 0.315 0.685
20 H 0.335 0.665
21 H 0.144 0.856
22 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.298 -10.140 0.948 15.968
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.120 4.120
3 Si 0.768 3.232
4 H -0.205 1.205
5 H -0.246 1.246
6 H -0.199 1.199
7 C -0.562 4.562
8 H 0.092 0.908
9 C 0.132 3.868
10 H 0.082 0.918
11 N -0.368 5.368
12 C -0.249 4.249
13 C -0.186 4.186
14 C -0.175 4.175
15 Br 0.033 6.967
16 C -0.356 4.356
17 S 0.393 5.607
18 H 0.075 0.925
19 H 0.127 0.873
20 H 0.149 0.851
21 H 0.162 0.838
22 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 11.608 -9.651 0.174 15.097
hybrid contribution 0.954 -0.188 0.987 1.385
sum 12.562 -9.839 1.161 15.999
Atomic orbital electron populations
1.69944 1.06781 1.27591 1.48618 1.25000 0.94646 1.00072 0.92312
0.85877 0.78422 0.80733 0.78201 1.20455 1.24565 1.19893 1.20714
0.86671 0.94917 1.53883 0.90770 1.18464 0.96611 0.80658 0.91043
0.91776 1.59366 1.13397 1.58214 1.05831 1.26333 1.00611 1.03343
0.94618 1.19823 1.05482 0.92635 1.00650 1.20658 1.08373 0.95812
0.92654 1.96597 1.86570 1.63926 1.49615 1.25496 1.09703 1.04287
0.96126 1.84202 1.61143 1.03657 1.11711 0.92472 0.87327 0.85137
0.83846 0.81765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.86 13.96 55.43 0.77 -26.08 14
2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 14
3 Si 0.94 23.08 26.03 -169.99 -4.42 18.66 14
4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 14
5 H -0.32 -7.91 7.11 56.52 0.40 -7.51 14
6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 14
7 C -0.52 -14.16 9.29 -34.44 -0.32 -14.48 14
8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 14
9 C 0.24 5.39 2.54 -70.01 -0.18 5.22 14
10 H 0.06 1.47 7.18 -51.93 -0.37 1.10 14
11 N -0.84 -16.80 6.68 -6.65 -0.04 -16.85 14
12 C -0.13 -2.48 5.38 -36.00 -0.19 -2.68 14
13 C -0.16 -2.85 9.90 -41.19 -0.41 -3.25 14
14 C -0.08 -1.32 6.17 -41.18 -0.25 -1.58 14
15 Br -0.05 -0.70 33.87 -68.01 -2.30 -3.00 14
16 C -0.22 -3.29 11.05 29.05 0.32 -2.97 14
17 S 0.13 2.14 22.53 -107.50 -2.42 -0.28 14
18 H 0.27 7.53 8.31 -40.82 -0.34 7.19 14
19 H 0.31 5.36 9.06 -39.29 -0.36 5.01 14
20 H 0.33 6.48 8.32 -39.29 -0.33 6.15 14
21 H 0.14 2.52 8.06 -52.49 -0.42 2.10 14
22 H 0.16 2.04 8.06 -52.49 -0.42 1.62 14
LS Contribution 230.59 15.07 3.47 3.47
Total: -1.00 -29.11 230.59 -7.56 -36.67
By element:
Atomic # 1 Polarization: 6.34 SS G_CDS: -1.49 Total: 4.86 kcal
Atomic # 6 Polarization: -16.32 SS G_CDS: -1.13 Total: -17.45 kcal
Atomic # 7 Polarization: -43.66 SS G_CDS: 0.73 Total: -42.93 kcal
Atomic # 14 Polarization: 23.08 SS G_CDS: -4.42 Total: 18.66 kcal
Atomic # 16 Polarization: 2.14 SS G_CDS: -2.42 Total: -0.28 kcal
Atomic # 35 Polarization: -0.70 SS G_CDS: -2.30 Total: -3.00 kcal
Total LS contribution 3.47 Total: 3.47 kcal
Total: -29.11 -7.56 -36.67 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000095673776.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.937 kcal
(2) G-P(sol) polarization free energy of solvation -29.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.826 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds