Wall clock time and date at job start Mon Mar 30 2020 07:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99658 * 2 1 4 4 H 1.48502 * 109.47309 * 269.99891 * 3 2 1 5 5 H 1.48494 * 109.47365 * 30.00335 * 3 2 1 6 6 H 1.48507 * 109.46819 * 150.00173 * 3 2 1 7 7 C 1.37873 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99734 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00337 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46916 * 60.00261 * 9 7 2 11 11 N 1.46898 * 109.46868 * 300.00384 * 9 7 2 12 12 C 1.50700 * 109.47212 * 180.02562 * 9 7 2 13 13 C 1.33399 * 125.19268 * 259.98130 * 12 9 7 14 14 C 1.38470 * 114.90859 * 179.77238 * 13 12 9 15 15 Br 1.89098 * 122.54493 * 180.24710 * 14 13 12 16 16 C 1.33430 * 114.90709 * 0.42675 * 14 13 12 17 17 S 1.75877 * 125.19613 * 79.97505 * 12 9 7 18 18 H 0.97001 * 119.99785 * 359.97438 * 1 2 3 19 19 H 1.00904 * 110.99295 * 176.04512 * 11 9 7 20 20 H 1.00897 * 111.00144 * 299.99292 * 11 9 7 21 21 H 1.07995 * 122.54360 * 359.97438 * 13 12 9 22 22 H 1.08002 * 125.20586 * 179.86604 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 1 3.8753 -0.6804 0.8889 11 7 4.0008 -0.5011 -1.2005 12 6 4.0140 -2.6148 -0.0023 13 6 4.4495 -3.2771 1.0707 14 6 4.8584 -4.5774 0.8271 15 35 5.5076 -5.7125 2.1931 16 6 4.7631 -4.9674 -0.4454 17 16 4.1155 -3.6529 -1.4183 18 1 -0.4850 0.8401 0.0004 19 1 5.0073 -0.4310 -1.1923 20 1 3.6770 -0.9584 -2.0396 21 1 4.4778 -2.8339 2.0551 22 1 5.0371 -5.9427 -0.8199 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095673776.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:49 Heat of formation + Delta-G solvation = 31.263010 kcal Electronic energy + Delta-G solvation = -10279.518363 eV Core-core repulsion = 8200.330931 eV Total energy + Delta-G solvation = -2079.187432 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.78869 -34.90324 -31.94007 -30.71363 -28.56620 -26.31359 -23.59334 -20.87877 -18.85139 -16.93420 -16.80194 -15.25233 -14.86937 -14.08417 -13.29883 -13.08792 -12.82859 -12.42757 -12.12353 -11.54215 -10.93807 -10.73252 -10.65000 -10.25572 -10.07349 -9.85910 -9.42851 -8.63869 -8.20776 -8.12360 -7.86639 -6.10575 -4.23169 1.25739 1.41651 2.12739 2.62837 2.89472 3.50938 3.55059 3.67013 4.55799 5.12982 5.17713 5.56096 5.73306 5.82245 6.23144 6.44558 6.58507 6.81792 7.40523 7.94104 8.15317 8.51253 8.87630 9.50206 10.98387 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.040902 B = 0.006416 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.400492 B = 4362.897767 C = 4598.904843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.085 3.915 3 Si 0.936 3.064 4 H -0.278 1.278 5 H -0.316 1.316 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.074 0.926 9 C 0.244 3.756 10 H 0.065 0.935 11 N -0.839 5.839 12 C -0.128 4.128 13 C -0.157 4.157 14 C -0.082 4.082 15 Br -0.050 7.050 16 C -0.218 4.218 17 S 0.131 5.869 18 H 0.266 0.734 19 H 0.315 0.685 20 H 0.335 0.665 21 H 0.144 0.856 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 -10.140 0.948 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.246 1.246 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.132 3.868 10 H 0.082 0.918 11 N -0.368 5.368 12 C -0.249 4.249 13 C -0.186 4.186 14 C -0.175 4.175 15 Br 0.033 6.967 16 C -0.356 4.356 17 S 0.393 5.607 18 H 0.075 0.925 19 H 0.127 0.873 20 H 0.149 0.851 21 H 0.162 0.838 22 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.608 -9.651 0.174 15.097 hybrid contribution 0.954 -0.188 0.987 1.385 sum 12.562 -9.839 1.161 15.999 Atomic orbital electron populations 1.69944 1.06781 1.27591 1.48618 1.25000 0.94646 1.00072 0.92312 0.85877 0.78422 0.80733 0.78201 1.20455 1.24565 1.19893 1.20714 0.86671 0.94917 1.53883 0.90770 1.18464 0.96611 0.80658 0.91043 0.91776 1.59366 1.13397 1.58214 1.05831 1.26333 1.00611 1.03343 0.94618 1.19823 1.05482 0.92635 1.00650 1.20658 1.08373 0.95812 0.92654 1.96597 1.86570 1.63926 1.49615 1.25496 1.09703 1.04287 0.96126 1.84202 1.61143 1.03657 1.11711 0.92472 0.87327 0.85137 0.83846 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.08 14 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 14 3 Si 0.94 23.08 26.03 -169.99 -4.42 18.66 14 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 14 5 H -0.32 -7.91 7.11 56.52 0.40 -7.51 14 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 14 7 C -0.52 -14.16 9.29 -34.44 -0.32 -14.48 14 8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 14 9 C 0.24 5.39 2.54 -70.01 -0.18 5.22 14 10 H 0.06 1.47 7.18 -51.93 -0.37 1.10 14 11 N -0.84 -16.80 6.68 -6.65 -0.04 -16.85 14 12 C -0.13 -2.48 5.38 -36.00 -0.19 -2.68 14 13 C -0.16 -2.85 9.90 -41.19 -0.41 -3.25 14 14 C -0.08 -1.32 6.17 -41.18 -0.25 -1.58 14 15 Br -0.05 -0.70 33.87 -68.01 -2.30 -3.00 14 16 C -0.22 -3.29 11.05 29.05 0.32 -2.97 14 17 S 0.13 2.14 22.53 -107.50 -2.42 -0.28 14 18 H 0.27 7.53 8.31 -40.82 -0.34 7.19 14 19 H 0.31 5.36 9.06 -39.29 -0.36 5.01 14 20 H 0.33 6.48 8.32 -39.29 -0.33 6.15 14 21 H 0.14 2.52 8.06 -52.49 -0.42 2.10 14 22 H 0.16 2.04 8.06 -52.49 -0.42 1.62 14 LS Contribution 230.59 15.07 3.47 3.47 Total: -1.00 -29.11 230.59 -7.56 -36.67 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -1.49 Total: 4.86 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.13 Total: -17.45 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.73 Total: -42.93 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.42 Total: 18.66 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.42 Total: -0.28 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.30 Total: -3.00 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.11 -7.56 -36.67 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095673776.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.937 kcal (2) G-P(sol) polarization free energy of solvation -29.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds