Wall clock time and date at job start Mon Mar 30 2020 07:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 S 1.75877 * 125.20665 * 74.68940 * 12 9 7 14 14 C 1.75882 * 90.98141 * 179.97438 * 13 12 9 15 15 C 1.33397 * 109.60633 * 0.29594 * 14 13 12 16 16 C 1.33431 * 125.19787 * 254.99720 * 12 9 7 17 17 Br 1.89104 * 122.54869 * 359.93895 * 16 12 9 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 20 20 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 21 21 H 1.08002 * 125.19884 * 180.02562 * 14 13 12 22 22 H 1.07997 * 122.54539 * 179.79404 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0137 -2.6150 -0.0013 13 16 3.9944 -3.6959 -1.3886 14 6 4.7257 -4.9808 -0.4358 15 6 4.9287 -4.5532 0.8113 16 6 4.5357 -3.2472 1.0513 17 35 4.7251 -2.4224 2.7424 18 1 -0.4850 0.8401 0.0004 19 1 5.0080 -0.4309 -1.1899 20 1 3.6783 -0.9580 -2.0383 21 1 4.9689 -5.9669 -0.8031 22 1 5.3665 -5.1779 1.5757 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095706014.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:29 Heat of formation + Delta-G solvation = 40.763367 kcal Electronic energy + Delta-G solvation = -10474.659320 eV Core-core repulsion = 8395.883854 eV Total energy + Delta-G solvation = -2078.775465 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.78198 -34.77327 -31.83793 -30.65066 -28.40413 -26.12127 -23.52471 -21.07023 -18.69682 -16.84031 -16.71191 -15.21735 -14.76400 -14.08168 -13.26906 -12.96806 -12.88549 -12.26847 -12.09743 -11.45169 -10.81085 -10.56591 -10.41526 -10.30328 -10.07156 -9.67138 -9.30186 -8.57941 -8.18384 -7.96279 -7.37408 -6.04538 -4.15939 1.33401 1.64248 2.16498 2.81645 2.87385 3.50496 3.60074 3.89828 4.67470 5.22260 5.25478 5.48435 5.77917 5.92479 6.11757 6.42960 6.50790 6.84756 7.46919 8.01568 8.22180 8.57519 8.93123 9.57828 11.04688 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.011654 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.504878 B = 2401.961099 C = 3147.774089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.091 3.909 3 Si 0.861 3.139 4 H -0.294 1.294 5 H -0.192 1.192 6 H -0.302 1.302 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.240 3.760 10 H 0.069 0.931 11 N -0.830 5.830 12 C -0.108 4.108 13 S 0.129 5.871 14 C -0.241 4.241 15 C -0.107 4.107 16 C -0.138 4.138 17 Br -0.040 7.040 18 H 0.264 0.736 19 H 0.311 0.689 20 H 0.330 0.670 21 H 0.162 0.838 22 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.952 -7.171 1.319 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.114 4.114 3 Si 0.687 3.313 4 H -0.221 1.221 5 H -0.113 1.113 6 H -0.229 1.229 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.128 3.872 10 H 0.086 0.914 11 N -0.359 5.359 12 C -0.231 4.231 13 S 0.391 5.609 14 C -0.377 4.377 15 C -0.139 4.139 16 C -0.229 4.229 17 Br 0.043 6.957 18 H 0.074 0.926 19 H 0.123 0.877 20 H 0.143 0.857 21 H 0.180 0.820 22 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.988 -6.032 0.683 12.554 hybrid contribution 0.984 -0.612 1.026 1.548 sum 11.972 -6.645 1.709 13.799 Atomic orbital electron populations 1.69941 1.06899 1.27481 1.48685 1.24906 0.94498 0.99911 0.92110 0.87265 0.84700 0.81147 0.78152 1.22095 1.11295 1.22919 1.20615 0.86412 0.94832 1.54074 0.91015 1.18529 0.96870 0.80307 0.91479 0.91397 1.60097 1.13075 1.57342 1.05401 1.26410 0.98228 1.03789 0.94636 1.84242 1.59631 1.03568 1.13428 1.25420 1.10375 1.03837 0.98115 1.19868 1.02611 0.94331 0.97105 1.20559 1.12560 0.96645 0.93127 1.96565 1.97165 1.81059 1.20861 0.92620 0.87718 0.85668 0.82007 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.96 55.43 0.77 -26.53 14 2 C 0.09 2.60 5.47 -17.82 -0.10 2.50 14 3 Si 0.86 21.33 26.94 -169.99 -4.58 16.75 14 4 H -0.29 -7.43 7.11 56.52 0.40 -7.02 14 5 H -0.19 -4.35 5.17 56.52 0.29 -4.05 14 6 H -0.30 -7.68 7.11 56.52 0.40 -7.28 14 7 C -0.52 -14.27 9.29 -34.44 -0.32 -14.59 14 8 H 0.07 2.18 7.98 -52.49 -0.42 1.76 14 9 C 0.24 5.39 2.40 -70.01 -0.17 5.22 14 10 H 0.07 1.59 6.26 -51.93 -0.33 1.27 14 11 N -0.83 -16.77 5.79 -6.65 -0.04 -16.81 14 12 C -0.11 -2.14 5.34 -35.99 -0.19 -2.33 14 13 S 0.13 2.16 22.68 -107.50 -2.44 -0.28 14 14 C -0.24 -3.52 11.23 29.04 0.33 -3.19 14 15 C -0.11 -1.69 10.04 -41.19 -0.41 -2.10 14 16 C -0.14 -2.56 6.17 -41.18 -0.25 -2.81 14 17 Br -0.04 -0.70 32.46 -68.01 -2.21 -2.91 14 18 H 0.26 7.65 8.31 -40.82 -0.34 7.31 14 19 H 0.31 5.43 9.06 -39.29 -0.36 5.08 14 20 H 0.33 6.43 8.41 -39.29 -0.33 6.10 14 21 H 0.16 1.82 8.06 -52.49 -0.42 1.40 14 22 H 0.14 1.83 8.06 -52.49 -0.42 1.41 14 LS Contribution 227.27 15.07 3.42 3.42 Total: -1.00 -30.00 227.27 -7.70 -37.70 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -1.52 Total: 5.97 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.12 Total: -17.32 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.74 Total: -43.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.58 Total: 16.75 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.44 Total: -0.28 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.21 Total: -2.91 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.00 -7.70 -37.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095706014.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.465 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds