Wall clock time and date at job start Mon Mar 30 2020 07:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 S 1.75877 * 125.20665 * 74.68940 * 12 9 7 14 14 C 1.75882 * 90.98141 * 179.97438 * 13 12 9 15 15 C 1.33397 * 109.60633 * 0.29594 * 14 13 12 16 16 C 1.33431 * 125.19787 * 254.99720 * 12 9 7 17 17 Br 1.89104 * 122.54869 * 359.93895 * 16 12 9 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 20 20 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 21 21 H 1.08002 * 125.19884 * 180.02562 * 14 13 12 22 22 H 1.07997 * 122.54539 * 179.79404 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8904 11 7 4.0015 -0.5009 -1.1989 12 6 4.0137 -2.6150 -0.0013 13 16 3.9944 -3.6959 -1.3886 14 6 4.7257 -4.9808 -0.4358 15 6 4.9287 -4.5532 0.8113 16 6 4.5357 -3.2472 1.0513 17 35 4.7251 -2.4224 2.7424 18 1 -0.4850 0.8401 0.0004 19 1 5.0080 -0.4309 -1.1899 20 1 3.6783 -0.9580 -2.0383 21 1 4.9689 -5.9669 -0.8031 22 1 5.3665 -5.1779 1.5757 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095706014.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:29 Heat of formation + Delta-G solvation = 19.898305 kcal Electronic energy + Delta-G solvation = -10475.564097 eV Core-core repulsion = 8395.883854 eV Total energy + Delta-G solvation = -2079.680242 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16950 -36.47149 -33.91987 -32.02757 -29.86474 -28.04046 -24.96728 -22.75816 -20.10045 -18.84196 -18.16838 -16.63019 -16.56515 -15.88378 -14.87080 -14.55246 -14.35382 -13.97487 -13.60262 -13.00126 -12.74237 -12.37319 -12.08573 -11.69165 -11.65565 -11.44391 -11.04834 -10.71839 -9.57890 -9.31341 -9.02957 -8.24114 -6.37747 -0.01845 0.27733 0.91847 1.42023 1.52265 1.56418 1.58718 1.93291 2.60438 3.14668 3.96126 4.12063 4.28264 4.51719 4.83935 5.01694 5.13759 5.33140 5.49597 6.09891 6.38656 6.73071 6.92206 7.39437 8.88777 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.011654 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.504878 B = 2401.961099 C = 3147.774089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.034 3.966 3 Si 0.918 3.082 4 H -0.300 1.300 5 H -0.154 1.154 6 H -0.312 1.312 7 C -0.513 4.513 8 H 0.028 0.972 9 C 0.251 3.749 10 H 0.060 0.940 11 N -0.832 5.832 12 C -0.156 4.156 13 S 0.136 5.864 14 C -0.212 4.212 15 C -0.124 4.124 16 C -0.135 4.135 17 Br -0.041 7.041 18 H 0.263 0.737 19 H 0.333 0.667 20 H 0.335 0.665 21 H 0.204 0.796 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.278 -8.119 0.856 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.166 4.166 3 Si 0.743 3.257 4 H -0.228 1.228 5 H -0.074 1.074 6 H -0.241 1.241 7 C -0.552 4.552 8 H 0.046 0.954 9 C 0.139 3.861 10 H 0.077 0.923 11 N -0.363 5.363 12 C -0.279 4.279 13 S 0.398 5.602 14 C -0.348 4.348 15 C -0.154 4.154 16 C -0.227 4.227 17 Br 0.043 6.957 18 H 0.072 0.928 19 H 0.147 0.853 20 H 0.149 0.851 21 H 0.221 0.779 22 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 13.345 -6.995 0.212 15.069 hybrid contribution 0.280 -0.501 1.171 1.304 sum 13.625 -7.496 1.383 15.612 Atomic orbital electron populations 1.70083 1.08760 1.28105 1.51570 1.25776 0.95054 1.03546 0.92176 0.86465 0.84869 0.76552 0.77841 1.22822 1.07432 1.24059 1.20810 0.89371 0.92725 1.52281 0.95390 1.18030 0.93529 0.82656 0.91892 0.92273 1.59746 1.14755 1.57025 1.04751 1.26071 1.01370 1.03504 0.96925 1.84175 1.59639 1.03851 1.12526 1.25927 1.07390 1.04436 0.97045 1.20109 1.03432 0.93486 0.98407 1.20927 1.11419 0.97699 0.92684 1.96560 1.97046 1.81343 1.20763 0.92841 0.85332 0.85076 0.77945 0.81724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.45 0.30 -59.39 14 2 C 0.03 1.96 5.47 84.66 0.46 2.43 14 3 Si 0.92 44.18 26.94 68.60 1.85 46.03 14 4 H -0.30 -14.71 7.11 99.48 0.71 -14.00 14 5 H -0.15 -6.46 5.17 99.48 0.51 -5.95 14 6 H -0.31 -15.49 7.11 99.48 0.71 -14.79 14 7 C -0.51 -28.58 9.29 25.60 0.24 -28.34 14 8 H 0.03 1.76 7.98 -2.91 -0.02 1.73 14 9 C 0.25 11.06 2.40 43.42 0.10 11.16 14 10 H 0.06 2.71 6.26 -2.39 -0.01 2.70 14 11 N -0.83 -31.90 5.79 -174.94 -1.01 -32.91 14 12 C -0.16 -5.99 5.34 24.60 0.13 -5.86 14 13 S 0.14 4.24 22.68 -56.49 -1.28 2.96 14 14 C -0.21 -5.32 11.23 66.72 0.75 -4.57 14 15 C -0.12 -3.47 10.04 21.23 0.21 -3.26 14 16 C -0.14 -4.74 6.17 21.24 0.13 -4.61 14 17 Br -0.04 -1.38 32.46 -20.37 -0.66 -2.04 14 18 H 0.26 15.76 8.31 -92.70 -0.77 14.98 14 19 H 0.33 10.65 9.06 -89.69 -0.81 9.84 14 20 H 0.34 12.49 8.41 -89.70 -0.75 11.74 14 21 H 0.20 3.40 8.06 -2.91 -0.02 3.37 14 22 H 0.17 3.71 8.06 -2.91 -0.02 3.68 14 Total: -1.00 -65.82 227.27 0.73 -65.10 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.49 Total: 13.31 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 2.03 Total: -33.06 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -0.71 Total: -92.30 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.85 Total: 46.03 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.28 Total: 2.96 kcal Atomic # 35 Polarization: -1.38 SS G_CDS: -0.66 Total: -2.04 kcal Total: -65.82 0.73 -65.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095706014.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.994 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds