Wall clock time and date at job start Mon Mar 30 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.90967 * 2 1 4 4 C 1.53987 * 109.92092 * 238.89331 * 2 1 3 5 5 C 1.54599 * 105.14522 * 239.23048 * 4 2 1 6 6 H 1.09000 * 110.72817 * 96.57430 * 5 4 2 7 7 N 1.46496 * 110.72734 * 219.68572 * 5 4 2 8 8 C 1.38858 * 120.00245 * 204.99578 * 7 5 4 9 9 C 1.39561 * 119.84305 * 179.97438 * 8 7 5 10 10 C 1.36338 * 120.16199 * 179.97438 * 9 8 7 11 11 C 1.40893 * 119.83790 * 0.29861 * 10 9 8 12 12 C 1.41130 * 120.15985 * 179.71938 * 11 10 9 13 13 H 1.07991 * 120.00521 * 204.60647 * 12 11 10 14 14 C 1.39872 * 119.99873 * 24.61142 * 12 11 10 15 15 N 1.30907 * 119.99581 * 17.97141 * 14 12 11 16 16 Si 1.86793 * 120.00118 * 197.97007 * 14 12 11 17 17 H 1.48500 * 109.47235 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47028 * 120.00378 * 16 14 12 19 19 H 1.48497 * 109.47271 * 240.00064 * 16 14 12 20 20 C 1.40890 * 119.68392 * 359.40867 * 11 10 9 21 21 C 1.36340 * 119.83475 * 0.58887 * 20 11 10 22 22 C 1.54939 * 102.91539 * 338.04140 * 5 4 2 23 23 N 1.47913 * 110.07661 * 121.20783 * 2 1 3 24 24 C 1.46900 * 110.99626 * 265.28726 * 23 2 1 25 25 H 1.09001 * 109.47500 * 181.09866 * 1 2 3 26 26 H 1.08992 * 109.47314 * 301.10586 * 1 2 3 27 27 H 1.09007 * 109.46419 * 61.10563 * 1 2 3 28 28 H 1.09004 * 110.31192 * 120.31049 * 4 2 1 29 29 H 1.09004 * 110.39587 * 358.18786 * 4 2 1 30 30 H 0.96999 * 119.99710 * 24.99327 * 7 5 4 31 31 H 1.07994 * 119.92150 * 0.02562 * 9 8 7 32 32 H 1.08004 * 120.08762 * 180.02562 * 10 9 8 33 33 H 0.97000 * 119.99538 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.08251 * 180.31737 * 20 11 10 35 35 H 1.07998 * 119.91786 * 179.72426 * 21 20 11 36 36 H 1.09006 * 110.66386 * 155.84572 * 22 5 4 37 37 H 1.09000 * 110.66789 * 278.97683 * 22 5 4 38 38 H 1.08997 * 109.46994 * 60.00407 * 24 23 2 39 39 H 1.09005 * 109.46512 * 179.97438 * 24 23 2 40 40 H 1.08990 * 109.47300 * 300.00167 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0547 -0.7479 -1.2396 5 6 2.9101 -1.9076 -0.6795 6 1 2.3291 -2.8288 -0.6348 7 7 4.1180 -2.0974 -1.4863 8 6 4.7453 -3.3359 -1.5166 9 6 5.8955 -3.5132 -2.2867 10 6 6.5170 -4.7262 -2.3207 11 6 5.9915 -5.8040 -1.5808 12 6 6.6259 -7.0642 -1.6158 13 1 6.0602 -7.9596 -1.4053 14 6 7.9876 -7.1534 -1.9229 15 7 8.7496 -6.0928 -1.8330 16 14 8.7186 -8.7858 -2.4614 17 1 7.6548 -9.8216 -2.4827 18 1 9.2982 -8.6441 -3.8213 19 1 9.7840 -9.1893 -1.5089 20 6 4.8335 -5.6160 -0.8007 21 6 4.2227 -4.3973 -0.7761 22 6 3.2732 -1.4142 0.7436 23 7 2.0378 -0.7198 1.1882 24 6 2.3243 0.2131 2.2862 25 1 -0.3634 -1.0275 0.0197 26 1 -0.3633 0.5309 0.8798 27 1 -0.3632 0.4966 -0.8998 28 1 2.6686 -0.0853 -1.8496 29 1 1.2240 -1.1399 -1.8266 30 1 4.4796 -1.3580 -1.9995 31 1 6.2949 -2.6873 -2.8565 32 1 7.4073 -4.8620 -2.9168 33 1 9.6939 -6.1545 -2.0463 34 1 4.4283 -6.4363 -0.2270 35 1 3.3324 -4.2529 -0.1821 36 1 3.4972 -2.2571 1.3975 37 1 4.1129 -0.7201 0.7075 38 1 1.4116 0.7416 2.5613 39 1 2.6957 -0.3425 3.1473 40 1 3.0777 0.9321 1.9648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126423699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:25 Heat of formation + Delta-G solvation = 27.001525 kcal Electronic energy + Delta-G solvation = -19066.742489 eV Core-core repulsion = 16266.695876 eV Total energy + Delta-G solvation = -2800.046614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.42150 -37.65478 -34.86751 -33.00307 -31.89336 -30.37235 -29.28145 -28.02823 -26.07883 -24.84520 -23.93463 -21.66992 -20.59216 -20.14346 -19.68014 -17.18793 -16.47172 -15.97383 -15.10631 -14.93089 -14.59253 -14.24935 -13.77567 -13.70805 -13.15023 -12.82765 -12.56202 -12.44123 -12.25828 -12.11636 -11.92352 -11.73117 -11.26072 -11.25655 -11.14687 -11.04444 -10.96855 -10.69749 -10.51504 -10.39821 -9.63203 -9.27638 -9.22400 -8.56953 -8.46322 -7.47372 -6.63901 -6.37903 -4.02387 2.91047 3.11981 3.16463 3.21959 3.35533 3.82970 4.06760 4.41227 4.65659 4.72281 4.82190 4.99849 5.24904 5.31289 5.35401 5.42947 5.50803 5.66291 5.74777 5.78582 5.82787 5.87595 5.91414 6.13184 6.17866 6.25311 6.31154 6.38462 6.80151 6.93252 7.01243 7.08156 7.22010 7.33257 7.61634 7.68544 7.81674 8.16789 8.35657 8.50327 8.68387 8.81337 9.07519 9.16656 10.38308 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048417 B = 0.003748 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.171298 B = 7468.786648 C = 7530.162088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 H 0.049 0.951 4 C -0.135 4.135 5 C 0.163 3.837 6 H 0.089 0.911 7 N -0.752 5.752 8 C 0.090 3.910 9 C -0.162 4.162 10 C -0.124 4.124 11 C 0.075 3.925 12 C -0.467 4.467 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.902 3.098 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.188 4.188 21 C -0.158 4.158 22 C 0.019 3.981 23 N -0.518 5.518 24 C 0.018 3.982 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.384 0.616 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.275 0.725 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 11.150 2.408 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.067 0.933 4 C -0.174 4.174 5 C 0.055 3.945 6 H 0.107 0.893 7 N -0.386 5.386 8 C -0.007 4.007 9 C -0.184 4.184 10 C -0.144 4.144 11 C 0.072 3.928 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.435 5.435 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.208 4.208 21 C -0.180 4.180 22 C -0.111 4.111 23 N -0.243 5.243 24 C -0.131 4.131 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.217 0.783 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.325 10.772 2.699 15.164 hybrid contribution 1.298 0.284 -0.538 1.433 sum -9.028 11.056 2.160 14.436 Atomic orbital electron populations 1.21752 0.94029 1.02488 1.00910 1.22348 0.96218 0.95945 0.90131 0.93310 1.22761 1.00092 0.97567 0.96950 1.21410 0.86735 0.97585 0.88747 0.89320 1.43905 1.29436 1.10660 1.54628 1.17346 0.95438 0.85364 1.02542 1.20030 0.96903 0.97940 1.03553 1.20913 1.00572 0.92227 1.00661 1.17507 0.91482 0.93411 0.90390 1.19406 0.93745 0.93771 1.42853 0.90894 1.25800 0.97320 0.97762 0.93182 1.69869 1.06332 1.30411 1.36901 0.86370 0.79227 0.82816 0.78871 1.18614 1.19985 1.20293 1.20578 1.00799 0.95780 1.03661 1.19920 1.00796 0.93568 1.03717 1.23831 0.90515 0.98533 0.98177 1.64640 1.27177 1.26132 1.06355 1.22487 1.00157 0.95246 0.95172 0.91743 0.92992 0.92593 0.91331 0.90468 0.78334 0.89624 0.86376 0.91406 0.89097 0.89207 0.89769 0.93598 0.91653 0.91276 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.33 37.16 0.35 -0.93 16 2 C 0.06 0.69 3.08 -66.64 -0.21 0.49 16 3 H 0.05 0.52 7.73 -51.93 -0.40 0.12 16 4 C -0.13 -1.61 6.30 -25.38 -0.16 -1.77 16 5 C 0.16 2.44 3.13 -66.07 -0.21 2.23 16 6 H 0.09 1.45 6.35 -51.93 -0.33 1.12 16 7 N -0.75 -12.97 5.32 -50.24 -0.27 -13.23 16 8 C 0.09 1.94 6.67 -83.69 -0.56 1.38 16 9 C -0.16 -3.80 9.82 -39.77 -0.39 -4.19 16 10 C -0.12 -3.25 8.64 -39.26 -0.34 -3.59 16 11 C 0.08 2.04 5.57 -106.79 -0.60 1.44 16 12 C -0.47 -12.76 9.03 -37.87 -0.34 -13.11 16 13 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 14 C 0.07 1.93 5.13 -17.33 -0.09 1.84 16 15 N -0.81 -21.55 10.96 55.54 0.61 -20.94 16 16 Si 0.90 19.33 29.60 -169.99 -5.03 14.30 16 17 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.19 -4.69 9.74 -39.26 -0.38 -5.08 16 21 C -0.16 -3.57 9.14 -39.77 -0.36 -3.93 16 22 C 0.02 0.28 6.24 -1.90 -0.01 0.26 16 23 N -0.52 -6.52 5.19 -230.78 -1.20 -7.72 16 24 C 0.02 0.19 9.40 60.06 0.56 0.76 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 29 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 30 H 0.38 6.00 8.39 -40.82 -0.34 5.66 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.12 3.22 6.16 -52.48 -0.32 2.90 16 33 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 34 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.09 1.83 6.15 -52.49 -0.32 1.51 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.05 0.68 7.96 -51.93 -0.41 0.27 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.26 8.00 -51.93 -0.42 -0.16 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -27.91 320.96 -10.07 -37.98 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.28 Total: 8.96 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -2.73 Total: -24.18 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.86 Total: -41.89 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.91 -10.07 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126423699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.980 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds