Wall clock time and date at job start Mon Mar 30 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.90967 * 2 1 4 4 C 1.53987 * 109.92092 * 238.89331 * 2 1 3 5 5 C 1.54599 * 105.14522 * 239.23048 * 4 2 1 6 6 H 1.09000 * 110.72817 * 96.57430 * 5 4 2 7 7 N 1.46496 * 110.72734 * 219.68572 * 5 4 2 8 8 C 1.38858 * 120.00245 * 204.99578 * 7 5 4 9 9 C 1.39561 * 119.84305 * 179.97438 * 8 7 5 10 10 C 1.36338 * 120.16199 * 179.97438 * 9 8 7 11 11 C 1.40893 * 119.83790 * 0.29861 * 10 9 8 12 12 C 1.41130 * 120.15985 * 179.71938 * 11 10 9 13 13 H 1.07991 * 120.00521 * 204.60647 * 12 11 10 14 14 C 1.39872 * 119.99873 * 24.61142 * 12 11 10 15 15 N 1.30907 * 119.99581 * 17.97141 * 14 12 11 16 16 Si 1.86793 * 120.00118 * 197.97007 * 14 12 11 17 17 H 1.48500 * 109.47235 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47028 * 120.00378 * 16 14 12 19 19 H 1.48497 * 109.47271 * 240.00064 * 16 14 12 20 20 C 1.40890 * 119.68392 * 359.40867 * 11 10 9 21 21 C 1.36340 * 119.83475 * 0.58887 * 20 11 10 22 22 C 1.54939 * 102.91539 * 338.04140 * 5 4 2 23 23 N 1.47913 * 110.07661 * 121.20783 * 2 1 3 24 24 C 1.46900 * 110.99626 * 265.28726 * 23 2 1 25 25 H 1.09001 * 109.47500 * 181.09866 * 1 2 3 26 26 H 1.08992 * 109.47314 * 301.10586 * 1 2 3 27 27 H 1.09007 * 109.46419 * 61.10563 * 1 2 3 28 28 H 1.09004 * 110.31192 * 120.31049 * 4 2 1 29 29 H 1.09004 * 110.39587 * 358.18786 * 4 2 1 30 30 H 0.96999 * 119.99710 * 24.99327 * 7 5 4 31 31 H 1.07994 * 119.92150 * 0.02562 * 9 8 7 32 32 H 1.08004 * 120.08762 * 180.02562 * 10 9 8 33 33 H 0.97000 * 119.99538 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.08251 * 180.31737 * 20 11 10 35 35 H 1.07998 * 119.91786 * 179.72426 * 21 20 11 36 36 H 1.09006 * 110.66386 * 155.84572 * 22 5 4 37 37 H 1.09000 * 110.66789 * 278.97683 * 22 5 4 38 38 H 1.08997 * 109.46994 * 60.00407 * 24 23 2 39 39 H 1.09005 * 109.46512 * 179.97438 * 24 23 2 40 40 H 1.08990 * 109.47300 * 300.00167 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0547 -0.7479 -1.2396 5 6 2.9101 -1.9076 -0.6795 6 1 2.3291 -2.8288 -0.6348 7 7 4.1180 -2.0974 -1.4863 8 6 4.7453 -3.3359 -1.5166 9 6 5.8955 -3.5132 -2.2867 10 6 6.5170 -4.7262 -2.3207 11 6 5.9915 -5.8040 -1.5808 12 6 6.6259 -7.0642 -1.6158 13 1 6.0602 -7.9596 -1.4053 14 6 7.9876 -7.1534 -1.9229 15 7 8.7496 -6.0928 -1.8330 16 14 8.7186 -8.7858 -2.4614 17 1 7.6548 -9.8216 -2.4827 18 1 9.2982 -8.6441 -3.8213 19 1 9.7840 -9.1893 -1.5089 20 6 4.8335 -5.6160 -0.8007 21 6 4.2227 -4.3973 -0.7761 22 6 3.2732 -1.4142 0.7436 23 7 2.0378 -0.7198 1.1882 24 6 2.3243 0.2131 2.2862 25 1 -0.3634 -1.0275 0.0197 26 1 -0.3633 0.5309 0.8798 27 1 -0.3632 0.4966 -0.8998 28 1 2.6686 -0.0853 -1.8496 29 1 1.2240 -1.1399 -1.8266 30 1 4.4796 -1.3580 -1.9995 31 1 6.2949 -2.6873 -2.8565 32 1 7.4073 -4.8620 -2.9168 33 1 9.6939 -6.1545 -2.0463 34 1 4.4283 -6.4363 -0.2270 35 1 3.3324 -4.2529 -0.1821 36 1 3.4972 -2.2571 1.3975 37 1 4.1129 -0.7201 0.7075 38 1 1.4116 0.7416 2.5613 39 1 2.6957 -0.3425 3.1473 40 1 3.0777 0.9321 1.9648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126423699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:24 Heat of formation + Delta-G solvation = 10.532664 kcal Electronic energy + Delta-G solvation = -19067.456633 eV Core-core repulsion = 16266.695876 eV Total energy + Delta-G solvation = -2800.760757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58777 -39.35146 -36.48156 -34.73484 -32.84885 -31.89680 -31.05919 -29.68301 -27.06866 -26.28176 -25.31416 -23.25148 -22.31497 -21.42961 -20.90237 -19.11837 -18.00413 -17.25576 -16.84104 -16.15698 -15.74994 -15.55264 -15.35213 -14.79387 -14.51747 -14.39163 -13.95216 -13.82127 -13.79115 -13.39053 -13.31278 -13.08359 -12.82546 -12.75268 -12.47881 -12.24079 -12.13422 -12.09490 -11.94714 -11.57328 -11.47847 -11.15394 -11.04916 -10.30872 -9.44739 -9.39734 -8.55535 -8.16565 -6.00942 1.09871 1.19156 1.40722 1.54936 1.58248 2.28017 2.66297 2.84317 3.25059 3.65887 3.71174 3.88666 4.04754 4.23962 4.33478 4.46684 4.47802 4.51746 4.53250 4.56366 4.80226 4.85144 4.92655 4.96684 5.00646 5.03076 5.07887 5.15578 5.22855 5.31898 5.42782 5.43841 5.73209 5.76462 5.89828 5.94487 6.10321 6.19088 6.41798 6.68122 6.88000 7.08924 7.13071 7.30134 8.48414 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048417 B = 0.003748 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.171298 B = 7468.786648 C = 7530.162088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.062 3.938 3 H 0.060 0.940 4 C -0.127 4.127 5 C 0.157 3.843 6 H 0.075 0.925 7 N -0.741 5.741 8 C 0.113 3.887 9 C -0.173 4.173 10 C -0.142 4.142 11 C 0.037 3.963 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.032 3.968 15 N -0.841 5.841 16 Si 0.977 3.023 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.269 1.269 20 C -0.198 4.198 21 C -0.164 4.164 22 C 0.025 3.975 23 N -0.527 5.527 24 C 0.017 3.983 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.395 0.605 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.282 0.718 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 12.706 2.309 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 H 0.078 0.922 4 C -0.166 4.166 5 C 0.050 3.950 6 H 0.093 0.907 7 N -0.375 5.375 8 C 0.014 3.986 9 C -0.195 4.195 10 C -0.162 4.162 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.469 5.469 16 Si 0.798 3.202 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.194 1.194 20 C -0.218 4.218 21 C -0.186 4.186 22 C -0.105 4.105 23 N -0.252 5.252 24 C -0.131 4.131 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.230 0.770 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.576 12.379 2.609 17.148 hybrid contribution 1.532 -0.015 -0.442 1.594 sum -10.044 12.364 2.168 16.077 Atomic orbital electron populations 1.21731 0.92674 1.02230 1.02149 1.22436 0.97234 0.96043 0.88894 0.92244 1.22733 0.99866 0.96408 0.97545 1.21535 0.85900 0.98433 0.89110 0.90670 1.43934 1.29724 1.09290 1.54572 1.17413 0.94302 0.86731 1.00161 1.20230 0.97422 0.97647 1.04179 1.20855 1.00660 0.93448 1.01243 1.17818 0.92867 0.94059 0.91875 1.19619 0.94915 0.93832 1.45377 0.91511 1.26609 0.97168 1.01590 0.92602 1.69925 1.06870 1.32508 1.37641 0.85248 0.78285 0.77975 0.78667 1.18477 1.19075 1.19373 1.20763 1.00554 0.96994 1.03507 1.20128 1.01440 0.92976 1.04057 1.23634 0.91431 0.98108 0.97334 1.64650 1.25899 1.27268 1.07410 1.22543 1.01180 0.94988 0.94419 0.92709 0.92298 0.90905 0.90189 0.89559 0.76991 0.87390 0.88189 0.90756 0.88816 0.86981 0.91691 0.94011 0.89897 0.91483 0.95323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.33 71.98 0.67 -1.38 16 2 C 0.06 1.18 3.08 45.05 0.14 1.32 16 3 H 0.06 1.04 7.73 -2.39 -0.02 1.02 16 4 C -0.13 -2.63 6.30 31.47 0.20 -2.43 16 5 C 0.16 4.37 3.13 46.20 0.14 4.52 16 6 H 0.08 2.33 6.35 -2.39 -0.02 2.32 16 7 N -0.74 -24.04 5.32 -312.86 -1.66 -25.70 16 8 C 0.11 4.79 6.67 38.67 0.26 5.05 16 9 C -0.17 -8.05 9.82 22.15 0.22 -7.83 16 10 C -0.14 -7.69 8.64 22.48 0.19 -7.50 16 11 C 0.04 2.06 5.57 -21.27 -0.12 1.95 16 12 C -0.51 -28.81 9.03 23.38 0.21 -28.60 16 13 H 0.07 3.71 7.91 -2.92 -0.02 3.68 16 14 C 0.03 1.71 5.13 85.23 0.44 2.15 16 15 N -0.84 -46.20 10.96 21.82 0.24 -45.96 16 16 Si 0.98 40.44 29.60 68.60 2.03 42.47 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 C -0.20 -10.12 9.74 22.48 0.22 -9.90 16 21 C -0.16 -7.35 9.14 22.15 0.20 -7.15 16 22 C 0.02 0.68 6.24 86.65 0.54 1.22 16 23 N -0.53 -12.05 5.19 -884.06 -4.59 -16.64 16 24 C 0.02 0.32 9.40 127.69 1.20 1.52 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.08 1.50 7.75 -2.38 -0.02 1.48 16 29 H 0.09 1.66 7.69 -2.39 -0.02 1.64 16 30 H 0.40 11.29 8.39 -92.71 -0.78 10.51 16 31 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.10 5.69 6.16 -2.91 -0.02 5.68 16 33 H 0.28 14.04 8.30 -92.71 -0.77 13.28 16 34 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.11 4.47 6.15 -2.91 -0.02 4.45 16 36 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.04 1.17 7.96 -2.39 -0.02 1.15 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 40 H 0.03 0.52 8.00 -2.39 -0.02 0.50 16 Total: -1.00 -61.49 320.96 0.77 -60.72 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.24 Total: 32.18 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 4.51 Total: -47.07 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -6.02 Total: -88.30 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -61.49 0.77 -60.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126423699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.255 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds