Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 110.60071 * 2 1 4 4 C 1.54938 * 110.81352 * 123.11288 * 2 1 3 5 5 C 1.54602 * 102.92397 * 155.91273 * 4 2 1 6 6 H 1.08999 * 110.38827 * 96.99682 * 5 4 2 7 7 N 1.46496 * 110.30867 * 219.12489 * 5 4 2 8 8 C 1.38850 * 119.99791 * 202.17048 * 7 5 4 9 9 C 1.39568 * 119.84476 * 359.72527 * 8 7 5 10 10 C 1.36333 * 120.16281 * 180.28010 * 9 8 7 11 11 C 1.40893 * 119.83666 * 359.97438 * 10 9 8 12 12 C 1.41134 * 120.15460 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99900 * 334.51422 * 12 11 10 14 14 C 1.39867 * 120.00144 * 154.52130 * 12 11 10 15 15 N 1.30905 * 119.99541 * 343.04272 * 14 12 11 16 16 Si 1.86800 * 120.00169 * 163.04355 * 14 12 11 17 17 H 1.48500 * 109.47259 * 59.99621 * 16 14 12 18 18 H 1.48492 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46912 * 299.99931 * 16 14 12 20 20 C 1.40883 * 119.68804 * 359.97438 * 11 10 9 21 21 C 1.36339 * 119.83866 * 0.02562 * 20 11 10 22 22 C 1.53991 * 105.13727 * 338.04304 * 5 4 2 23 23 N 1.47899 * 107.06032 * 358.77211 * 22 5 4 24 24 C 1.46902 * 110.99849 * 145.84545 * 23 22 5 25 25 H 1.09001 * 109.47328 * 181.55023 * 1 2 3 26 26 H 1.09002 * 109.46942 * 301.54246 * 1 2 3 27 27 H 1.08993 * 109.47639 * 61.54427 * 1 2 3 28 28 H 1.08999 * 110.72252 * 37.55269 * 4 2 1 29 29 H 1.08999 * 110.72107 * 274.27424 * 4 2 1 30 30 H 0.96998 * 119.99844 * 22.17351 * 7 5 4 31 31 H 1.08001 * 119.91636 * 0.25417 * 9 8 7 32 32 H 1.07999 * 120.08486 * 180.02562 * 10 9 8 33 33 H 0.96999 * 119.99393 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.08186 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.91927 * 180.02562 * 21 20 11 36 36 H 1.08999 * 109.91576 * 118.13078 * 22 5 4 37 37 H 1.09003 * 109.91524 * 239.42071 * 22 5 4 38 38 H 1.09001 * 109.47333 * 60.13070 * 24 23 22 39 39 H 1.08999 * 109.47130 * 180.12487 * 24 23 22 40 40 H 1.09000 * 109.47424 * 300.12555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0805 -0.7912 1.2131 5 6 3.4892 -1.2158 0.7384 6 1 4.2414 -0.5217 1.1131 7 7 3.7875 -2.5783 1.1865 8 6 5.1057 -3.0017 1.2912 9 6 6.1438 -2.1284 0.9632 10 6 7.4403 -2.5392 1.0582 11 6 7.7310 -3.8487 1.4892 12 6 9.0707 -4.2808 1.5905 13 1 9.8350 -3.8170 0.9845 14 6 9.4087 -5.3098 2.4756 15 7 8.5832 -5.6457 3.4344 16 14 11.0379 -6.2045 2.2894 17 1 12.1538 -5.2341 2.4244 18 1 11.1555 -7.2432 3.3440 19 1 11.0997 -6.8469 0.9520 20 6 6.6780 -4.7244 1.8196 21 6 5.3862 -4.3000 1.7199 22 6 3.4292 -1.1599 -0.7993 23 7 2.0541 -0.7570 -1.1656 24 6 2.0542 0.0747 -2.3765 25 1 -0.3634 -1.0273 0.0278 26 1 -0.3633 0.5376 0.8759 27 1 -0.3634 0.4896 -0.9034 28 1 1.4620 -1.6655 1.4161 29 1 2.1465 -0.1513 2.0930 30 1 3.0641 -3.1846 1.4100 31 1 5.9195 -1.1249 0.6330 32 1 8.2427 -1.8623 0.8045 33 1 8.8175 -6.3595 4.0480 34 1 6.8935 -5.7297 2.1503 35 1 4.5779 -4.9701 1.9733 36 1 4.1432 -0.4256 -1.1723 37 1 3.6515 -2.1425 -1.2155 38 1 2.4833 -0.4893 -3.2047 39 1 1.0309 0.3588 -2.6222 40 1 2.6482 0.9716 -2.2013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126423930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = 27.391493 kcal Electronic energy + Delta-G solvation = -19075.427598 eV Core-core repulsion = 16275.397894 eV Total energy + Delta-G solvation = -2800.029703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.42844 -37.63758 -34.85884 -32.99504 -31.83289 -30.42849 -29.28957 -28.03147 -26.02092 -24.91700 -24.00148 -21.55339 -20.61623 -20.17393 -19.56523 -17.17327 -16.46577 -15.74201 -15.59873 -15.00401 -14.69826 -14.08827 -13.83361 -13.65663 -12.98254 -12.81834 -12.59385 -12.33981 -12.21157 -12.03732 -11.81820 -11.76264 -11.52547 -11.20758 -11.06915 -11.01689 -10.96174 -10.82851 -10.55270 -10.42399 -9.65669 -9.28847 -9.20518 -8.53929 -8.43682 -7.47290 -6.61631 -6.36829 -4.02070 2.94382 3.11882 3.15500 3.18802 3.37126 3.94538 4.07006 4.27085 4.68541 4.69217 4.81927 5.05776 5.23234 5.29520 5.35419 5.40899 5.46046 5.65932 5.71298 5.77444 5.81129 5.84633 5.94990 6.07939 6.16566 6.26870 6.32092 6.34450 6.87031 6.91597 7.02427 7.08144 7.22121 7.33733 7.62321 7.68624 7.82098 8.16778 8.36160 8.51773 8.70550 8.82538 9.07919 9.17186 10.39983 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.051553 B = 0.003776 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.003955 B = 7412.942059 C = 7697.735670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 H 0.051 0.949 4 C -0.124 4.124 5 C 0.157 3.843 6 H 0.077 0.923 7 N -0.749 5.749 8 C 0.093 3.907 9 C -0.160 4.160 10 C -0.188 4.188 11 C 0.075 3.925 12 C -0.469 4.469 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.809 5.809 16 Si 0.903 3.097 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.121 4.121 21 C -0.163 4.163 22 C 0.019 3.981 23 N -0.517 5.517 24 C 0.016 3.984 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.386 0.614 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.276 0.724 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 8.309 -5.138 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 H 0.069 0.931 4 C -0.163 4.163 5 C 0.048 3.952 6 H 0.095 0.905 7 N -0.384 5.384 8 C -0.004 4.004 9 C -0.182 4.182 10 C -0.209 4.209 11 C 0.072 3.928 12 C -0.500 4.500 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.437 5.437 16 Si 0.729 3.271 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.141 4.141 21 C -0.184 4.184 22 C -0.111 4.111 23 N -0.242 5.242 24 C -0.133 4.133 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.219 0.781 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.379 7.860 -5.103 15.526 hybrid contribution 1.073 0.136 0.156 1.093 sum -11.306 7.996 -4.947 14.705 Atomic orbital electron populations 1.21658 0.93899 1.02449 1.01140 1.22760 0.95911 0.95622 0.90737 0.93062 1.22814 0.96164 1.00351 0.96962 1.21363 0.95535 0.86399 0.91857 0.90532 1.43955 1.04526 1.11796 1.78079 1.17361 0.83276 0.94185 1.05600 1.19856 0.92735 0.97246 1.08404 1.20557 0.94242 0.96109 1.09957 1.17483 0.93425 0.90212 0.91646 1.19335 0.94091 1.16134 1.20418 0.91034 1.25787 0.98391 0.96223 0.93640 1.69843 1.36653 1.25528 1.11651 0.86457 0.82457 0.79447 0.78774 1.19307 1.20596 1.19100 1.20919 0.90652 0.99971 1.02565 1.20046 0.96748 0.94099 1.07550 1.23602 0.88227 1.01698 0.97535 1.64729 1.19725 1.36952 1.02775 1.22507 1.01402 0.95672 0.93674 0.91814 0.92396 0.92909 0.90262 0.90798 0.78054 0.89629 0.89205 0.91294 0.86370 0.89504 0.93961 0.89376 0.91419 0.91596 0.95633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.49 37.15 0.35 -0.87 16 2 C 0.06 0.64 2.91 -65.79 -0.19 0.45 16 3 H 0.05 0.55 7.96 -51.93 -0.41 0.13 16 4 C -0.12 -1.48 6.21 -24.87 -0.15 -1.64 16 5 C 0.16 2.32 2.93 -66.57 -0.20 2.13 16 6 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16 7 N -0.75 -13.06 5.17 -50.72 -0.26 -13.32 16 8 C 0.09 2.01 6.67 -83.69 -0.56 1.45 16 9 C -0.16 -3.61 9.14 -39.77 -0.36 -3.97 16 10 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 11 C 0.08 2.05 5.57 -106.79 -0.59 1.45 16 12 C -0.47 -12.84 9.03 -37.87 -0.34 -13.19 16 13 H 0.07 1.89 7.90 -52.49 -0.41 1.48 16 14 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 15 N -0.81 -21.66 10.96 55.54 0.61 -21.05 16 16 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 C -0.12 -3.19 8.63 -39.27 -0.34 -3.53 16 21 C -0.16 -3.82 9.82 -39.77 -0.39 -4.21 16 22 C 0.02 0.27 6.49 -2.76 -0.02 0.26 16 23 N -0.52 -6.48 5.25 -230.84 -1.21 -7.69 16 24 C 0.02 0.17 9.30 60.07 0.56 0.73 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 7.49 -51.93 -0.39 0.06 16 28 H 0.08 0.94 7.65 -51.93 -0.40 0.55 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.39 6.22 8.34 -40.82 -0.34 5.88 16 31 H 0.09 1.72 6.23 -52.49 -0.33 1.40 16 32 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 34 H 0.12 3.23 6.19 -52.49 -0.32 2.91 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.04 0.60 7.73 -51.93 -0.40 0.20 16 37 H 0.09 1.46 7.92 -51.93 -0.41 1.05 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.60 7.46 -51.93 -0.39 0.21 16 40 H 0.03 0.26 8.00 -51.93 -0.42 -0.16 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -28.01 319.75 -10.02 -38.03 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.23 Total: 9.02 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.71 Total: -24.18 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.86 Total: -42.06 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.01 -10.02 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126423930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.417 kcal (2) G-P(sol) polarization free energy of solvation -28.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds