Wall clock time and date at job start Mon Mar 30 2020 07:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86793 * 119.99880 * 2 1 4 4 H 1.48504 * 109.47115 * 239.99763 * 3 2 1 5 5 H 1.48499 * 109.47744 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47328 * 120.00174 * 3 2 1 7 7 C 1.40140 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00267 * 180.02562 * 7 2 1 9 9 C 1.41793 * 119.99934 * 0.02562 * 7 2 1 10 10 O 1.21777 * 120.00150 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00397 * 180.27341 * 9 7 2 12 12 C 1.39621 * 120.00537 * 174.63033 * 11 9 7 13 13 C 1.39299 * 120.07418 * 274.64641 * 12 11 9 14 14 F 1.35089 * 120.04844 * 359.97027 * 13 12 11 15 15 C 1.38210 * 119.89986 * 179.71945 * 13 12 11 16 16 C 1.38576 * 120.05943 * 0.55395 * 15 13 12 17 17 F 1.35103 * 119.91938 * 179.74201 * 16 15 13 18 18 C 1.38543 * 120.15449 * 359.71877 * 16 15 13 19 19 C 1.38175 * 120.09459 * 0.02562 * 18 16 15 20 20 Cl 1.73595 * 120.03034 * 180.02562 * 19 18 16 21 21 H 0.97003 * 119.99811 * 359.97438 * 1 2 3 22 22 H 0.97007 * 119.99718 * 354.63569 * 11 9 7 23 23 H 1.08003 * 119.97089 * 180.29537 * 15 13 12 24 24 H 1.08009 * 119.95090 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0870 -1.2137 0.0010 9 6 1.2981 -2.4416 0.0005 10 8 0.0803 -2.4416 0.0005 11 7 1.9718 -3.6088 0.0066 12 6 1.2778 -4.8151 0.1198 13 6 0.9384 -5.3098 1.3769 14 9 1.2808 -4.6236 2.4890 15 6 0.2463 -6.5013 1.4845 16 6 -0.0995 -7.2086 0.3442 17 9 -0.7715 -8.3756 0.4529 18 6 0.2418 -6.7216 -0.9071 19 6 0.9291 -5.5284 -1.0223 20 17 1.3554 -4.9194 -2.5911 21 1 -0.4850 0.8401 0.0004 22 1 2.9390 -3.6109 -0.0675 23 1 -0.0216 -6.8836 2.4585 24 1 -0.0297 -7.2753 -1.7938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126518762.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:57 Heat of formation + Delta-G solvation = -127.859979 kcal Electronic energy + Delta-G solvation = -16943.599253 eV Core-core repulsion = 13518.099030 eV Total energy + Delta-G solvation = -3425.500223 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.011 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.10606 -50.07259 -40.67925 -38.90162 -37.49404 -35.32521 -34.41679 -31.83768 -30.49528 -28.27975 -24.33187 -24.12042 -22.00309 -19.61854 -19.42196 -18.55149 -18.02808 -17.58301 -17.00297 -16.88327 -16.37880 -15.95298 -15.88386 -15.59086 -14.98941 -14.65997 -14.26303 -13.94674 -13.58552 -13.12400 -12.93348 -12.70398 -12.65623 -12.21649 -12.09491 -12.05001 -10.95143 -10.08038 -10.00008 -9.91654 -9.64489 -8.35148 -6.98555 -0.31350 -0.25669 0.88319 1.40757 1.42920 1.55577 2.04097 2.23900 2.40693 2.72694 2.90398 3.17216 3.54058 3.67177 3.92421 4.04528 4.45191 4.59181 4.70646 4.86053 5.25903 5.43179 5.90763 6.11586 6.25430 6.78709 7.39886 8.43336 8.62252 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.029503 B = 0.006621 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.814476 B = 4227.667455 C = 4760.053455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.033 3.967 3 Si 0.998 3.002 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.551 3.449 10 O -0.623 6.623 11 N -0.713 5.713 12 C 0.117 3.883 13 C 0.116 3.884 14 F -0.132 7.132 15 C -0.171 4.171 16 C 0.139 3.861 17 F -0.118 7.118 18 C -0.141 4.141 19 C -0.001 4.001 20 Cl -0.038 7.038 21 H 0.277 0.723 22 H 0.406 0.594 23 H 0.180 0.820 24 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -11.707 -0.808 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.601 4.601 8 H 0.106 0.894 9 C 0.360 3.640 10 O -0.510 6.510 11 N -0.367 5.367 12 C 0.022 3.978 13 C 0.094 3.906 14 F -0.110 7.110 15 C -0.191 4.191 16 C 0.119 3.881 17 F -0.096 7.096 18 C -0.161 4.161 19 C -0.030 4.030 20 Cl -0.008 7.008 21 H 0.088 0.912 22 H 0.243 0.757 23 H 0.197 0.803 24 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.022 -11.547 -0.892 11.970 hybrid contribution 0.580 0.753 0.108 0.956 sum 3.602 -10.795 -0.784 11.407 Atomic orbital electron populations 1.70170 1.09603 1.29335 1.34053 1.26990 0.95480 1.05036 0.91024 0.85060 0.78282 0.74557 0.80385 1.17676 1.19789 1.17845 1.20486 0.95411 0.90525 1.53723 0.89354 1.17227 0.86902 0.83151 0.76682 1.90622 1.15756 1.87141 1.57457 1.43434 1.09583 1.02354 1.81370 1.17715 1.00047 0.89414 0.90643 1.17811 0.99189 0.91558 0.82007 1.91494 1.90110 1.79240 1.50173 1.21172 1.02012 0.94386 1.01519 1.16816 0.95355 0.83389 0.92490 1.91558 1.77247 1.44044 1.96776 1.21118 1.00591 0.95582 0.98786 1.20981 0.99951 0.95116 0.86912 1.98375 1.91556 1.87787 1.23131 0.91249 0.75703 0.80274 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.11 11.73 21.85 0.26 -47.86 14 2 C 0.03 1.78 5.50 85.33 0.47 2.25 14 3 Si 1.00 39.91 29.56 68.60 2.03 41.94 14 4 H -0.25 -9.49 7.11 99.48 0.71 -8.79 14 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 14 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 14 7 C -0.57 -31.35 9.31 23.61 0.22 -31.13 14 8 H 0.09 4.36 7.85 -2.91 -0.02 4.33 14 9 C 0.55 31.27 7.53 85.12 0.64 31.91 14 10 O -0.62 -40.94 14.86 -4.60 -0.07 -41.01 14 11 N -0.71 -32.16 4.46 -311.08 -1.39 -33.55 14 12 C 0.12 4.70 5.28 38.36 0.20 4.91 14 13 C 0.12 4.29 7.32 22.52 0.16 4.45 14 14 F -0.13 -5.35 17.08 44.97 0.77 -4.58 14 15 C -0.17 -4.84 10.00 22.34 0.22 -4.62 14 16 C 0.14 3.63 7.30 22.42 0.16 3.80 14 17 F -0.12 -2.73 17.26 44.97 0.78 -1.96 14 18 C -0.14 -3.82 9.80 22.33 0.22 -3.61 14 19 C 0.00 -0.02 6.34 22.46 0.14 0.12 14 20 Cl -0.04 -1.29 28.44 -2.72 -0.08 -1.37 14 21 H 0.28 15.04 8.29 -92.71 -0.77 14.27 14 22 H 0.41 15.89 8.79 -92.70 -0.81 15.08 14 23 H 0.18 3.94 8.06 -2.91 -0.02 3.91 14 24 H 0.18 3.69 8.06 -2.91 -0.02 3.67 14 Total: -1.00 -71.77 254.13 5.21 -66.56 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.47 Total: 13.74 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 2.45 Total: 8.09 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.13 Total: -81.41 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.07 Total: -41.01 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 1.54 Total: -6.54 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -71.77 5.21 -66.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126518762.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.298 kcal (2) G-P(sol) polarization free energy of solvation -71.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds