Wall clock time and date at job start Mon Mar 30 2020 07:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47438 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00111 * 8 6 4 12 12 C 1.39285 * 110.99841 * 236.04629 * 2 1 3 13 13 C 1.39574 * 121.09371 * 63.95592 * 12 2 1 14 14 C 1.38477 * 117.88146 * 180.02562 * 13 12 2 15 15 Cl 1.73599 * 120.03309 * 180.02562 * 14 13 12 16 16 N 1.32134 * 119.93340 * 359.97438 * 14 13 12 17 17 N 1.28303 * 122.38853 * 0.02562 * 16 14 13 18 18 C 1.31825 * 122.26626 * 359.68471 * 17 16 14 19 19 Cl 1.73599 * 120.13906 * 180.30462 * 18 17 16 20 20 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 21 21 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 22 22 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 23 23 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 24 24 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 25 25 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 26 26 H 1.07998 * 121.06040 * 0.02562 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 0.8169 3.2436 3.9921 10 1 2.8251 4.5942 3.8432 11 1 0.7553 5.3876 2.8600 12 6 1.9681 -0.7263 -1.0786 13 6 1.7365 -0.3164 -2.3926 14 6 2.2633 -1.0887 -3.4142 15 17 2.0097 -0.6301 -5.0692 16 7 2.9600 -2.1743 -3.1280 17 7 3.1753 -2.5546 -1.9217 18 6 2.7212 -1.8849 -0.8810 19 17 3.0521 -2.4456 0.7283 20 1 -0.3634 -1.0252 0.0708 21 1 -0.3633 0.4513 -0.9233 22 1 -0.3633 0.5740 0.8525 23 1 3.0798 1.3443 -0.1082 24 1 1.5612 1.9273 -0.8309 25 1 2.9859 4.9182 0.7767 26 1 1.1647 0.5746 -2.6057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127128388.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:38 Heat of formation + Delta-G solvation = 54.380260 kcal Electronic energy + Delta-G solvation = -15053.419385 eV Core-core repulsion = 12219.911123 eV Total energy + Delta-G solvation = -2833.508262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.013 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16508 -37.54857 -36.96523 -36.50341 -33.02820 -32.17025 -31.23679 -27.57878 -26.11014 -24.62812 -23.52460 -21.15496 -18.18121 -17.45980 -16.67648 -16.23917 -15.60860 -14.99536 -14.60213 -13.84520 -13.79322 -13.35059 -12.71006 -12.25793 -11.80643 -11.73784 -11.56915 -11.51163 -11.19431 -11.09780 -10.96379 -10.82599 -10.32855 -9.84519 -9.82178 -9.46138 -9.22015 -8.67167 -7.99334 -6.23469 -4.26884 0.58495 0.60723 1.38771 1.99353 3.20354 3.25553 3.28903 3.32500 3.86037 4.22020 4.31222 4.53791 4.70881 5.13284 5.25690 5.32511 5.70292 5.77934 5.92181 6.37615 6.81993 6.86720 7.46008 7.54997 7.82381 8.14370 8.38469 8.79040 9.38580 10.87380 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.006596 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.718347 B = 4244.242025 C = 5128.894300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.500 5.500 3 C 0.197 3.803 4 C -0.514 4.514 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.153 3.847 13 C -0.136 4.136 14 C 0.124 3.876 15 Cl -0.009 7.009 16 N -0.230 5.230 17 N -0.212 5.212 18 C 0.126 3.874 19 Cl 0.019 6.981 20 H 0.054 0.946 21 H 0.025 0.975 22 H 0.094 0.906 23 H 0.035 0.965 24 H 0.004 0.996 25 H 0.264 0.736 26 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -8.395 -5.567 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.222 5.222 3 C 0.074 3.926 4 C -0.552 4.552 5 H 0.088 0.912 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.045 3.955 13 C -0.168 4.168 14 C -0.047 4.047 15 Cl 0.019 6.981 16 N -0.075 5.075 17 N -0.057 5.057 18 C -0.046 4.046 19 Cl 0.047 6.953 20 H 0.072 0.928 21 H 0.044 0.956 22 H 0.113 0.887 23 H 0.053 0.947 24 H 0.022 0.978 25 H 0.074 0.926 26 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.258 -9.718 -5.701 11.491 hybrid contribution -1.110 2.254 0.534 2.569 sum -3.369 -7.464 -5.167 9.683 Atomic orbital electron populations 1.22380 0.85162 1.00971 1.02248 1.59979 1.08793 1.19202 1.34231 1.19988 0.95810 0.78600 0.98176 1.21047 1.35890 0.96974 1.01301 0.91193 1.24976 0.94893 0.97194 0.97217 1.69949 1.37636 1.11649 1.34063 0.86371 0.78307 0.79299 0.83070 1.19467 1.20842 1.20961 1.20012 0.92595 0.92319 0.90587 1.23061 1.00587 1.01442 0.91681 1.23482 0.97687 0.94691 0.88851 1.98416 1.94579 1.90325 1.14751 1.72905 1.11662 1.11914 1.11054 1.72908 1.15541 1.24239 0.93021 1.23898 0.96684 0.93012 0.91021 1.98425 1.93466 1.88428 1.14937 0.92764 0.95638 0.88698 0.94726 0.97809 0.92609 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.21 60.07 0.55 1.19 15 2 N -0.50 -9.68 4.22 -180.02 -0.76 -10.44 15 3 C 0.20 4.61 4.32 -4.97 -0.02 4.59 15 4 C -0.51 -13.13 8.46 -34.44 -0.29 -13.42 15 5 H 0.07 1.76 7.12 -52.49 -0.37 1.38 15 6 C 0.06 1.57 5.46 -17.82 -0.10 1.48 15 7 N -0.89 -24.92 13.29 55.43 0.74 -24.18 15 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 15 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 12 C 0.15 2.72 4.69 -83.47 -0.39 2.33 15 13 C -0.14 -2.18 8.66 -39.00 -0.34 -2.52 15 14 C 0.12 1.92 7.36 -17.33 -0.13 1.79 15 15 Cl -0.01 -0.11 29.13 -51.86 -1.51 -1.62 15 16 N -0.23 -3.91 11.48 32.85 0.38 -3.53 15 17 N -0.21 -3.73 11.48 33.02 0.38 -3.35 15 18 C 0.13 2.21 7.39 -17.05 -0.13 2.09 15 19 Cl 0.02 0.31 28.70 -51.86 -1.49 -1.17 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.03 0.39 7.46 -51.93 -0.39 0.00 15 22 H 0.09 1.65 6.76 -51.93 -0.35 1.30 15 23 H 0.03 0.90 8.06 -51.93 -0.42 0.48 15 24 H 0.00 0.10 7.60 -51.93 -0.39 -0.29 15 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 26 H 0.17 2.44 7.40 -52.49 -0.39 2.05 15 LS Contribution 265.54 15.07 4.00 4.00 Total: -1.00 -27.03 265.54 -6.00 -33.02 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: -1.87 Total: -5.56 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.84 Total: -2.47 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.73 Total: -41.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -3.00 Total: -2.80 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.03 -6.00 -33.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127128388.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.405 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds