Wall clock time and date at job start Mon Mar 30 2020 07:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47438 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00111 * 8 6 4 12 12 C 1.39285 * 110.99841 * 236.04629 * 2 1 3 13 13 C 1.39574 * 121.09371 * 63.95592 * 12 2 1 14 14 C 1.38477 * 117.88146 * 180.02562 * 13 12 2 15 15 Cl 1.73599 * 120.03309 * 180.02562 * 14 13 12 16 16 N 1.32134 * 119.93340 * 359.97438 * 14 13 12 17 17 N 1.28303 * 122.38853 * 0.02562 * 16 14 13 18 18 C 1.31825 * 122.26626 * 359.68471 * 17 16 14 19 19 Cl 1.73599 * 120.13906 * 180.30462 * 18 17 16 20 20 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 21 21 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 22 22 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 23 23 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 24 24 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 25 25 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 26 26 H 1.07998 * 121.06040 * 0.02562 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 0.8169 3.2436 3.9921 10 1 2.8251 4.5942 3.8432 11 1 0.7553 5.3876 2.8600 12 6 1.9681 -0.7263 -1.0786 13 6 1.7365 -0.3164 -2.3926 14 6 2.2633 -1.0887 -3.4142 15 17 2.0097 -0.6301 -5.0692 16 7 2.9600 -2.1743 -3.1280 17 7 3.1753 -2.5546 -1.9217 18 6 2.7212 -1.8849 -0.8810 19 17 3.0521 -2.4456 0.7283 20 1 -0.3634 -1.0252 0.0708 21 1 -0.3633 0.4513 -0.9233 22 1 -0.3633 0.5740 0.8525 23 1 3.0798 1.3443 -0.1082 24 1 1.5612 1.9273 -0.8309 25 1 2.9859 4.9182 0.7767 26 1 1.1647 0.5746 -2.6057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127128388.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:38 Heat of formation + Delta-G solvation = 37.635402 kcal Electronic energy + Delta-G solvation = -15054.145497 eV Core-core repulsion = 12219.911123 eV Total energy + Delta-G solvation = -2834.234374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.013 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.50901 -39.03078 -38.16813 -37.80687 -34.92652 -33.51236 -32.69912 -29.37882 -27.53212 -26.03690 -25.14373 -22.75801 -19.54377 -18.96355 -18.18601 -17.85442 -17.06739 -16.58643 -16.15691 -15.41700 -15.15548 -14.89217 -14.08700 -13.93130 -13.39659 -12.93786 -12.92077 -12.87956 -12.75422 -12.71874 -12.47579 -12.34812 -12.13349 -11.51188 -11.16900 -11.03675 -10.65642 -10.56323 -9.56134 -8.23667 -6.32937 -0.75240 -0.72077 0.14892 0.69079 1.43427 1.46332 1.57723 1.92440 2.35062 2.53515 2.89262 3.11442 3.19562 3.40807 3.87981 3.98252 4.40809 4.46057 4.58587 4.94501 5.01909 5.15383 5.59904 5.90492 5.92689 6.34507 6.80231 7.05200 7.36883 8.87780 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.021292 B = 0.006596 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.718347 B = 4244.242025 C = 5128.894300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.504 5.504 3 C 0.214 3.786 4 C -0.521 4.521 5 H 0.073 0.927 6 C 0.009 3.991 7 N -0.931 5.931 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.279 1.279 12 C 0.137 3.863 13 C -0.128 4.128 14 C 0.127 3.873 15 Cl 0.020 6.980 16 N -0.238 5.238 17 N -0.220 5.220 18 C 0.122 3.878 19 Cl 0.025 6.975 20 H 0.078 0.922 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.002 0.998 24 H -0.008 1.008 25 H 0.265 0.735 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 -8.646 -5.570 11.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.226 5.226 3 C 0.090 3.910 4 C -0.559 4.559 5 H 0.091 0.909 6 C -0.189 4.189 7 N -0.571 5.571 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.211 1.211 11 H -0.205 1.205 12 C 0.029 3.971 13 C -0.159 4.159 14 C -0.044 4.044 15 Cl 0.048 6.952 16 N -0.083 5.083 17 N -0.065 5.065 18 C -0.050 4.050 19 Cl 0.053 6.947 20 H 0.097 0.903 21 H 0.056 0.944 22 H 0.103 0.897 23 H 0.020 0.980 24 H 0.009 0.991 25 H 0.074 0.926 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.165 -9.999 -5.708 11.941 hybrid contribution -0.842 2.282 0.423 2.469 sum -4.007 -7.717 -5.285 10.175 Atomic orbital electron populations 1.22445 0.83399 1.02525 1.02415 1.59774 1.10392 1.16886 1.35515 1.19570 0.93776 0.80711 0.96936 1.21374 1.35277 0.97198 1.02034 0.90916 1.25792 0.94844 0.98014 1.00296 1.70061 1.39035 1.12014 1.36024 0.85379 0.77911 0.78361 0.79263 1.18409 1.21052 1.20516 1.20002 0.93566 0.92685 0.90869 1.23148 1.00045 1.01552 0.91162 1.23567 0.96771 0.93943 0.90153 1.98429 1.94310 1.89996 1.12492 1.72866 1.12002 1.12527 1.10919 1.72895 1.15875 1.24557 0.93218 1.23933 0.96572 0.93123 0.91383 1.98421 1.93428 1.88352 1.14478 0.90305 0.94444 0.89691 0.97989 0.99054 0.92594 0.80568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 9.21 127.69 1.18 2.37 15 2 N -0.50 -19.14 4.22 -723.46 -3.05 -22.20 15 3 C 0.21 10.07 4.32 85.56 0.37 10.44 15 4 C -0.52 -26.48 8.46 25.60 0.22 -26.26 15 5 H 0.07 3.59 7.12 -2.91 -0.02 3.57 15 6 C 0.01 0.50 5.46 84.66 0.46 0.96 15 7 N -0.93 -52.24 13.29 21.45 0.28 -51.96 15 8 Si 0.97 41.28 29.54 68.60 2.03 43.31 15 9 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 11 H -0.28 -11.68 7.11 99.48 0.71 -10.98 15 12 C 0.14 4.74 4.69 38.61 0.18 4.92 15 13 C -0.13 -3.92 8.66 22.65 0.20 -3.73 15 14 C 0.13 3.74 7.36 84.70 0.62 4.36 15 15 Cl 0.02 0.47 29.13 -2.72 -0.08 0.39 15 16 N -0.24 -7.78 11.48 -49.99 -0.57 -8.35 15 17 N -0.22 -7.55 11.48 -49.46 -0.57 -8.12 15 18 C 0.12 4.19 7.39 85.02 0.63 4.82 15 19 Cl 0.02 0.80 28.70 -2.72 -0.08 0.72 15 20 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.04 1.08 7.46 -2.39 -0.02 1.06 15 22 H 0.08 2.85 6.76 -2.38 -0.02 2.84 15 23 H 0.00 0.11 8.06 -2.39 -0.02 0.09 15 24 H -0.01 -0.40 7.60 -2.39 -0.02 -0.42 15 25 H 0.27 14.09 8.31 -92.71 -0.77 13.32 15 26 H 0.18 4.96 7.40 -2.91 -0.02 4.93 15 Total: -1.00 -56.23 265.54 3.03 -53.20 By element: Atomic # 1 Polarization: -6.09 SS G_CDS: 1.22 Total: -4.87 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 3.85 Total: -2.11 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -3.91 Total: -90.63 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 17 Polarization: 1.26 SS G_CDS: -0.16 Total: 1.11 kcal Total: -56.23 3.03 -53.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127128388.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.832 kcal (2) G-P(sol) polarization free energy of solvation -56.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds