Wall clock time and date at job start Mon Mar 30 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46010 * 2 1 4 4 C 1.53048 * 109.45802 * 119.95824 * 2 1 3 5 5 C 1.53117 * 109.27531 * 179.19756 * 4 2 1 6 6 C 1.53119 * 109.16096 * 302.34775 * 5 4 2 7 7 C 1.53039 * 109.28098 * 57.65550 * 6 5 4 8 8 N 1.46840 * 109.46770 * 240.01252 * 2 1 3 9 9 C 1.39851 * 110.99689 * 54.14452 * 8 2 1 10 10 C 1.39597 * 119.84100 * 54.88125 * 9 8 2 11 11 C 1.38051 * 120.55289 * 179.97438 * 10 9 8 12 12 C 1.38743 * 120.21973 * 0.25601 * 11 10 9 13 13 N 1.38865 * 120.16472 * 179.74563 * 12 11 10 14 14 C 1.41564 * 119.66905 * 359.51895 * 12 11 10 15 15 C 1.41032 * 120.26452 * 180.21047 * 14 12 11 16 16 H 1.08002 * 119.99505 * 336.33927 * 15 14 12 17 17 C 1.39884 * 120.00039 * 156.34652 * 15 14 12 18 18 N 1.30895 * 119.99870 * 342.50537 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 162.50086 * 17 15 14 20 20 H 1.48503 * 109.46768 * 60.00261 * 19 17 15 21 21 H 1.48494 * 109.46874 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47325 * 300.00380 * 19 17 15 23 23 C 1.38011 * 119.83935 * 234.89886 * 9 8 2 24 24 H 1.09005 * 109.47181 * 175.15910 * 1 2 3 25 25 H 1.08999 * 109.47933 * 295.16362 * 1 2 3 26 26 H 1.08995 * 109.47182 * 55.16730 * 1 2 3 27 27 H 1.08995 * 109.50287 * 299.13861 * 4 2 1 28 28 H 1.09001 * 109.50018 * 59.26015 * 4 2 1 29 29 H 1.08998 * 109.52525 * 62.25116 * 5 4 2 30 30 H 1.08998 * 109.52557 * 182.37891 * 5 4 2 31 31 H 1.09001 * 109.50121 * 177.59740 * 6 5 4 32 32 H 1.08999 * 109.50486 * 297.71004 * 6 5 4 33 33 H 1.09001 * 109.46139 * 180.80460 * 7 6 5 34 34 H 1.09002 * 109.45833 * 60.83341 * 7 6 5 35 35 H 1.08004 * 119.72308 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.89174 * 179.97438 * 11 10 9 37 37 H 0.97005 * 120.00102 * 5.45548 * 13 12 11 38 38 H 0.97000 * 119.99926 * 185.45159 * 13 12 11 39 39 H 0.96998 * 119.99744 * 185.06402 * 18 17 15 40 40 H 1.07998 * 120.11645 * 0.02761 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 1.2503 5 6 3.5709 -0.7357 1.2360 6 6 4.0548 -1.4188 -0.0462 7 6 3.4865 -0.6779 -1.2588 8 7 2.0194 -0.6920 -1.1991 9 6 1.4653 -0.1389 -2.3580 10 6 1.5924 1.2293 -2.6041 11 6 1.0517 1.7906 -3.7436 12 6 0.3697 0.9986 -4.6561 13 7 -0.1783 1.5653 -5.7993 14 6 0.2394 -0.3908 -4.4182 15 6 -0.4475 -1.2083 -5.3396 16 1 -1.1836 -0.7758 -6.0010 17 6 -0.1754 -2.5792 -5.3967 18 7 0.9240 -3.0509 -4.8654 19 14 -1.3811 -3.7368 -6.2309 20 1 -1.5412 -3.3432 -7.6539 21 1 -0.8641 -5.1269 -6.1575 22 1 -2.6960 -3.6602 -5.5452 23 6 0.7953 -0.9484 -3.2527 24 1 -0.3634 -1.0240 -0.0867 25 1 -0.3635 0.4369 0.9301 26 1 -0.3633 0.5870 -0.8435 27 1 1.6893 -0.1977 2.1400 28 1 1.6658 -1.7444 1.2581 29 1 3.9456 0.2873 1.2673 30 1 3.9379 -1.2848 2.1031 31 1 5.1439 -1.3946 -0.0825 32 1 3.7125 -2.4536 -0.0587 33 1 3.8176 -1.1704 -2.1731 34 1 3.8404 0.3530 -1.2530 35 1 2.1189 1.8538 -1.8975 36 1 1.1560 2.8504 -3.9231 37 1 -0.0179 2.5003 -6.0019 38 1 -0.7215 1.0262 -6.3952 39 1 1.1488 -3.9888 -4.9685 40 1 0.6982 -2.0064 -3.0586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127165174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:19 Heat of formation + Delta-G solvation = 13.761532 kcal Electronic energy + Delta-G solvation = -20074.561127 eV Core-core repulsion = 17273.940384 eV Total energy + Delta-G solvation = -2800.620743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.28960 -37.21581 -33.94370 -33.49125 -31.99698 -31.15385 -29.44863 -27.13978 -26.18460 -24.86466 -23.02948 -21.40107 -21.11081 -19.82618 -18.90118 -17.04161 -15.98385 -15.46398 -15.30295 -14.75067 -14.65123 -13.99296 -13.72470 -13.32122 -13.26214 -12.74290 -12.33091 -12.23203 -11.83899 -11.67369 -11.48000 -11.39852 -11.29790 -11.09776 -11.02032 -10.53393 -10.45750 -10.39684 -10.16023 -10.06616 -9.65927 -9.46070 -9.08385 -8.91648 -7.49678 -7.31879 -6.61267 -6.16933 -4.06685 2.86230 3.13079 3.14665 3.19758 3.28113 4.02028 4.63420 4.73648 5.17202 5.21516 5.26388 5.29416 5.58830 5.76314 5.81837 5.86965 5.95018 6.00872 6.16379 6.21218 6.23637 6.30723 6.36162 6.43325 6.50405 6.54348 6.61750 6.74838 6.87980 7.08620 7.16067 7.29612 7.59982 7.64200 7.79864 7.89066 8.10725 8.25133 8.39132 8.74424 8.89006 8.96484 9.15951 9.22841 10.35897 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.006879 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.432106 B = 4069.221151 C = 4778.032398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.033 0.967 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.116 4.116 7 C 0.066 3.934 8 N -0.484 5.484 9 C 0.057 3.943 10 C -0.219 4.219 11 C -0.174 4.174 12 C 0.113 3.887 13 N -0.886 5.886 14 C 0.064 3.936 15 C -0.464 4.464 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.795 5.795 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.110 4.110 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.376 0.624 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 2.772 6.788 7.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.018 4.018 3 H 0.050 0.950 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.061 4.061 8 N -0.206 5.206 9 C -0.037 4.037 10 C -0.241 4.241 11 C -0.198 4.198 12 C 0.012 3.988 13 N -0.427 5.427 14 C 0.059 3.941 15 C -0.495 4.495 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.422 5.422 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.132 4.132 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.201 0.799 38 H 0.219 0.781 39 H 0.089 0.911 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.978 1.983 6.981 7.522 hybrid contribution -0.243 0.540 -0.832 1.021 sum 1.735 2.523 6.150 6.870 Atomic orbital electron populations 1.21777 0.94538 1.02578 1.00902 1.21514 0.95443 0.94816 0.90070 0.94956 1.21649 0.95133 1.01419 0.96735 1.21561 0.96232 1.00173 0.97660 1.21605 0.98988 1.00449 0.94387 1.22008 0.87944 0.98019 0.98153 1.59575 1.05734 1.54515 1.00793 1.18250 1.02388 0.91027 0.92054 1.20463 1.09271 0.94994 0.99401 1.19803 1.06751 0.96591 0.96662 1.17973 0.99377 0.93066 0.88426 1.41901 1.61449 1.12283 1.27117 1.17174 0.95011 0.88774 0.93144 1.19060 1.20448 0.91910 1.18052 0.91162 1.25753 0.94927 0.98854 0.94511 1.69815 1.20494 1.15978 1.35881 0.86454 0.81631 0.79046 0.79984 1.19459 1.20522 1.19079 1.20926 1.00596 0.99752 0.91922 0.92124 0.93545 0.91741 0.92381 0.91285 0.92773 0.92504 0.92316 0.91243 0.90750 0.95712 0.90220 0.89871 0.79921 0.78140 0.91119 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.84 37.16 0.33 -2.13 16 2 C 0.09 1.57 2.05 -67.72 -0.14 1.43 16 3 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 4 C -0.11 -1.62 5.37 -26.65 -0.14 -1.76 16 5 C -0.12 -1.58 6.00 -26.61 -0.16 -1.74 16 6 C -0.12 -1.72 6.09 -26.65 -0.16 -1.89 16 7 C 0.07 1.21 5.23 -3.83 -0.02 1.19 16 8 N -0.48 -9.82 4.46 -163.61 -0.73 -10.55 16 9 C 0.06 1.32 3.27 -83.78 -0.27 1.05 16 10 C -0.22 -4.95 8.33 -39.14 -0.33 -5.28 16 11 C -0.17 -3.94 9.87 -39.46 -0.39 -4.33 16 12 C 0.11 2.68 6.79 -83.22 -0.56 2.12 16 13 N -0.89 -17.74 8.97 32.75 0.29 -17.45 16 14 C 0.06 1.68 5.59 -106.66 -0.60 1.09 16 15 C -0.46 -12.02 8.57 -37.91 -0.32 -12.34 16 16 H 0.07 1.72 6.57 -52.49 -0.34 1.38 16 17 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 18 N -0.80 -20.76 10.89 55.54 0.60 -20.15 16 19 Si 0.90 18.89 29.60 -169.99 -5.03 13.86 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.11 -2.86 8.60 -38.75 -0.33 -3.20 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.27 6.94 -51.93 -0.36 0.91 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.49 8.11 -51.93 -0.42 1.07 16 34 H 0.02 0.45 7.85 -51.93 -0.41 0.05 16 35 H 0.08 1.69 7.10 -52.48 -0.37 1.32 16 36 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.38 6.36 8.84 -40.82 -0.36 6.00 16 38 H 0.39 7.63 7.00 -40.82 -0.29 7.35 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.13 3.54 6.10 -52.49 -0.32 3.22 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -27.17 312.05 -9.53 -36.71 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.18 Total: 16.85 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -3.19 Total: -23.97 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.17 Total: -48.15 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.17 -9.53 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127165174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.468 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds