Wall clock time and date at job start Mon Mar 30 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46010 * 2 1 4 4 C 1.53048 * 109.45802 * 119.95824 * 2 1 3 5 5 C 1.53117 * 109.27531 * 179.19756 * 4 2 1 6 6 C 1.53119 * 109.16096 * 302.34775 * 5 4 2 7 7 C 1.53039 * 109.28098 * 57.65550 * 6 5 4 8 8 N 1.46840 * 109.46770 * 240.01252 * 2 1 3 9 9 C 1.39851 * 110.99689 * 54.14452 * 8 2 1 10 10 C 1.39597 * 119.84100 * 54.88125 * 9 8 2 11 11 C 1.38051 * 120.55289 * 179.97438 * 10 9 8 12 12 C 1.38743 * 120.21973 * 0.25601 * 11 10 9 13 13 N 1.38865 * 120.16472 * 179.74563 * 12 11 10 14 14 C 1.41564 * 119.66905 * 359.51895 * 12 11 10 15 15 C 1.41032 * 120.26452 * 180.21047 * 14 12 11 16 16 H 1.08002 * 119.99505 * 336.33927 * 15 14 12 17 17 C 1.39884 * 120.00039 * 156.34652 * 15 14 12 18 18 N 1.30895 * 119.99870 * 342.50537 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 162.50086 * 17 15 14 20 20 H 1.48503 * 109.46768 * 60.00261 * 19 17 15 21 21 H 1.48494 * 109.46874 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47325 * 300.00380 * 19 17 15 23 23 C 1.38011 * 119.83935 * 234.89886 * 9 8 2 24 24 H 1.09005 * 109.47181 * 175.15910 * 1 2 3 25 25 H 1.08999 * 109.47933 * 295.16362 * 1 2 3 26 26 H 1.08995 * 109.47182 * 55.16730 * 1 2 3 27 27 H 1.08995 * 109.50287 * 299.13861 * 4 2 1 28 28 H 1.09001 * 109.50018 * 59.26015 * 4 2 1 29 29 H 1.08998 * 109.52525 * 62.25116 * 5 4 2 30 30 H 1.08998 * 109.52557 * 182.37891 * 5 4 2 31 31 H 1.09001 * 109.50121 * 177.59740 * 6 5 4 32 32 H 1.08999 * 109.50486 * 297.71004 * 6 5 4 33 33 H 1.09001 * 109.46139 * 180.80460 * 7 6 5 34 34 H 1.09002 * 109.45833 * 60.83341 * 7 6 5 35 35 H 1.08004 * 119.72308 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.89174 * 179.97438 * 11 10 9 37 37 H 0.97005 * 120.00102 * 5.45548 * 13 12 11 38 38 H 0.97000 * 119.99926 * 185.45159 * 13 12 11 39 39 H 0.96998 * 119.99744 * 185.06402 * 18 17 15 40 40 H 1.07998 * 120.11645 * 0.02761 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 1.2503 5 6 3.5709 -0.7357 1.2360 6 6 4.0548 -1.4188 -0.0462 7 6 3.4865 -0.6779 -1.2588 8 7 2.0194 -0.6920 -1.1991 9 6 1.4653 -0.1389 -2.3580 10 6 1.5924 1.2293 -2.6041 11 6 1.0517 1.7906 -3.7436 12 6 0.3697 0.9986 -4.6561 13 7 -0.1783 1.5653 -5.7993 14 6 0.2394 -0.3908 -4.4182 15 6 -0.4475 -1.2083 -5.3396 16 1 -1.1836 -0.7758 -6.0010 17 6 -0.1754 -2.5792 -5.3967 18 7 0.9240 -3.0509 -4.8654 19 14 -1.3811 -3.7368 -6.2309 20 1 -1.5412 -3.3432 -7.6539 21 1 -0.8641 -5.1269 -6.1575 22 1 -2.6960 -3.6602 -5.5452 23 6 0.7953 -0.9484 -3.2527 24 1 -0.3634 -1.0240 -0.0867 25 1 -0.3635 0.4369 0.9301 26 1 -0.3633 0.5870 -0.8435 27 1 1.6893 -0.1977 2.1400 28 1 1.6658 -1.7444 1.2581 29 1 3.9456 0.2873 1.2673 30 1 3.9379 -1.2848 2.1031 31 1 5.1439 -1.3946 -0.0825 32 1 3.7125 -2.4536 -0.0587 33 1 3.8176 -1.1704 -2.1731 34 1 3.8404 0.3530 -1.2530 35 1 2.1189 1.8538 -1.8975 36 1 1.1560 2.8504 -3.9231 37 1 -0.0179 2.5003 -6.0019 38 1 -0.7215 1.0262 -6.3952 39 1 1.1488 -3.9888 -4.9685 40 1 0.6982 -2.0064 -3.0586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127165174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:18 Heat of formation + Delta-G solvation = -1.828177 kcal Electronic energy + Delta-G solvation = -20075.237147 eV Core-core repulsion = 17273.940384 eV Total energy + Delta-G solvation = -2801.296763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84655 -38.89835 -35.53747 -35.29257 -33.38063 -32.70253 -31.34345 -28.72063 -27.72301 -26.68492 -24.43720 -23.11245 -22.65439 -21.37833 -20.40952 -18.83607 -17.75313 -17.23541 -16.90289 -16.39099 -16.19927 -15.23389 -15.16817 -14.82109 -14.68673 -14.41055 -14.09876 -13.83607 -13.54832 -13.26477 -13.09261 -12.84461 -12.75173 -12.72111 -12.62366 -12.18820 -11.93494 -11.79793 -11.58178 -11.41768 -11.37225 -10.98169 -10.95030 -10.62528 -9.23733 -9.07402 -8.49100 -7.95787 -6.00996 1.05808 1.33187 1.40925 1.50723 1.56131 2.26048 2.84257 3.18110 3.64596 3.82605 3.95492 4.00914 4.08605 4.31084 4.46488 4.52033 4.53759 4.59447 4.73019 4.80795 4.86468 4.99066 5.04035 5.10185 5.13636 5.19949 5.28319 5.31972 5.34504 5.37862 5.43030 5.56920 5.72677 5.85492 5.98722 6.22580 6.34109 6.46253 6.50841 6.94396 7.02390 7.12863 7.35929 7.55474 8.49761 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.006879 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.432106 B = 4069.221151 C = 4778.032398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.031 0.969 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.110 4.110 7 C 0.066 3.934 8 N -0.501 5.501 9 C 0.061 3.939 10 C -0.217 4.217 11 C -0.181 4.181 12 C 0.105 3.895 13 N -0.874 5.874 14 C 0.031 3.969 15 C -0.491 4.491 16 H 0.076 0.924 17 C 0.033 3.967 18 N -0.830 5.830 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.266 1.266 23 C -0.136 4.136 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.280 0.720 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 3.566 8.028 9.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.020 4.020 3 H 0.049 0.951 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.061 4.061 8 N -0.223 5.223 9 C -0.034 4.034 10 C -0.238 4.238 11 C -0.205 4.205 12 C 0.003 3.997 13 N -0.417 5.417 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.094 0.906 17 C -0.181 4.181 18 N -0.458 5.458 19 Si 0.797 3.203 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.190 1.190 23 C -0.158 4.158 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.221 0.779 38 H 0.221 0.779 39 H 0.091 0.909 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.210 2.812 8.212 8.957 hybrid contribution -0.276 0.388 -1.172 1.265 sum 1.935 3.200 7.040 7.971 Atomic orbital electron populations 1.21733 0.94872 1.01300 1.01329 1.21651 0.95233 0.94950 0.90202 0.95069 1.21642 0.96136 1.00822 0.95868 1.21555 0.95141 1.00884 0.97503 1.21580 1.00206 0.99439 0.93589 1.22022 0.86927 0.98275 0.98875 1.59589 1.06786 1.55132 1.00787 1.18321 1.01343 0.91135 0.92557 1.20688 1.08666 0.94866 0.99628 1.20123 1.06186 0.97879 0.96343 1.18118 0.99399 0.92550 0.89663 1.41785 1.60773 1.13170 1.25975 1.17533 0.96011 0.90291 0.93627 1.19340 1.21185 0.92905 1.18759 0.90565 1.26580 0.96222 1.00124 0.95128 1.69923 1.22185 1.16351 1.37292 0.85364 0.78898 0.76842 0.79203 1.18353 1.20030 1.19024 1.20811 1.02805 0.98795 0.93345 0.93641 0.90228 0.94680 0.89620 0.92081 0.91909 0.89731 0.90019 0.92207 0.93647 0.95599 0.88609 0.87215 0.77939 0.77879 0.90926 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.84 71.98 0.64 -4.02 16 2 C 0.09 2.94 2.05 44.94 0.09 3.04 16 3 H 0.03 1.07 7.08 -2.39 -0.02 1.05 16 4 C -0.11 -2.81 5.37 30.65 0.16 -2.65 16 5 C -0.11 -2.64 6.00 30.67 0.18 -2.46 16 6 C -0.11 -3.08 6.09 30.65 0.19 -2.90 16 7 C 0.07 2.42 5.23 86.33 0.45 2.87 16 8 N -0.50 -20.53 4.46 -671.56 -3.00 -23.53 16 9 C 0.06 2.90 3.27 38.14 0.12 3.03 16 10 C -0.22 -9.74 8.33 22.55 0.19 -9.55 16 11 C -0.18 -8.09 9.87 22.35 0.22 -7.87 16 12 C 0.11 5.04 6.79 38.97 0.26 5.30 16 13 N -0.87 -34.48 8.97 -50.30 -0.45 -34.93 16 14 C 0.03 1.66 5.59 -21.18 -0.12 1.54 16 15 C -0.49 -26.20 8.57 23.35 0.20 -26.00 16 16 H 0.08 3.81 6.57 -2.91 -0.02 3.79 16 17 C 0.03 1.69 5.15 85.23 0.44 2.13 16 18 N -0.83 -45.22 10.89 21.82 0.24 -44.99 16 19 Si 0.97 39.50 29.60 68.60 2.03 41.53 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 23 C -0.14 -7.38 8.60 22.81 0.20 -7.19 16 24 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 26 H 0.03 1.39 6.94 -2.39 -0.02 1.37 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.88 8.11 -2.39 -0.02 1.86 16 34 H 0.03 0.93 7.85 -2.39 -0.02 0.91 16 35 H 0.10 3.95 7.10 -2.91 -0.02 3.92 16 36 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.39 12.70 8.84 -92.70 -0.82 11.88 16 38 H 0.39 15.24 7.00 -92.71 -0.65 14.59 16 39 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 40 H 0.10 5.87 6.10 -2.91 -0.02 5.85 16 Total: -1.00 -60.90 312.05 1.62 -59.28 By element: Atomic # 1 Polarization: 47.79 SS G_CDS: -0.43 Total: 47.36 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 3.23 Total: -44.73 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -3.21 Total: -103.44 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -60.90 1.62 -59.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127165174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.449 kcal (2) G-P(sol) polarization free energy of solvation -60.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds