Wall clock time and date at job start Mon Mar 30 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39849 * 120.00118 * 2 1 4 4 C 1.39605 * 119.84335 * 174.15955 * 3 2 1 5 5 C 1.38048 * 120.55291 * 179.97438 * 4 3 2 6 6 C 1.38743 * 120.22220 * 0.25664 * 5 4 3 7 7 N 1.38855 * 120.16619 * 179.74554 * 6 5 4 8 8 C 1.41568 * 119.66890 * 359.51932 * 6 5 4 9 9 C 1.41028 * 120.26466 * 180.21158 * 8 6 5 10 10 H 1.08001 * 120.00062 * 333.89942 * 9 8 6 11 11 C 1.39884 * 120.00119 * 153.90994 * 9 8 6 12 12 N 1.30898 * 119.99644 * 345.98406 * 11 9 8 13 13 Si 1.86795 * 120.00130 * 165.98535 * 11 9 8 14 14 H 1.48497 * 109.47080 * 59.99898 * 13 11 9 15 15 H 1.48504 * 109.47034 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47297 * 299.99703 * 13 11 9 17 17 C 1.38008 * 119.84068 * 354.18097 * 3 2 1 18 18 C 1.46503 * 119.99885 * 179.97438 * 2 1 3 19 19 C 1.54262 * 110.02962 * 51.70114 * 18 2 1 20 20 C 1.54896 * 104.19270 * 217.10250 * 19 18 2 21 21 C 1.54881 * 102.74794 * 37.94179 * 20 19 18 22 22 C 1.53870 * 110.03460 * 294.52910 * 18 2 1 23 23 H 1.08998 * 109.47597 * 89.99833 * 1 2 3 24 24 H 1.09000 * 109.46806 * 210.00524 * 1 2 3 25 25 H 1.09001 * 109.47092 * 329.99765 * 1 2 3 26 26 H 1.08001 * 119.72012 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.89206 * 179.97438 * 5 4 3 28 28 H 0.96998 * 120.00269 * 5.28372 * 7 6 5 29 29 H 0.97004 * 120.00412 * 185.28875 * 7 6 5 30 30 H 0.97007 * 119.99918 * 185.04881 * 12 11 9 31 31 H 1.08002 * 120.11458 * 359.97270 * 17 3 2 32 32 H 1.09006 * 110.01211 * 173.14058 * 18 2 1 33 33 H 1.08997 * 110.49182 * 335.78087 * 19 18 2 34 34 H 1.08999 * 110.49013 * 98.42385 * 19 18 2 35 35 H 1.08996 * 110.75409 * 279.62603 * 20 19 18 36 36 H 1.09003 * 110.91106 * 156.33159 * 20 19 18 37 37 H 1.09002 * 110.49217 * 203.37587 * 21 20 19 38 38 H 1.09004 * 110.60027 * 80.79067 * 21 20 19 39 39 H 1.08996 * 110.03601 * 238.56891 * 22 18 2 40 40 H 1.09005 * 110.03092 * 359.95655 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1643 1.2111 0.0000 4 6 3.5549 1.2104 0.1232 5 6 4.2599 2.3973 0.1244 6 6 3.5907 3.6071 0.0081 7 7 4.3005 4.8005 0.0148 8 6 2.1811 3.6186 -0.1222 9 6 1.4886 4.8409 -0.2457 10 1 1.9135 5.7459 0.1628 11 6 0.2514 4.8812 -0.8972 12 7 -0.1382 3.8654 -1.6251 13 14 -0.8445 6.3844 -0.7286 14 1 -0.1287 7.5791 -1.2437 15 1 -2.0903 6.1790 -1.5103 16 1 -1.1856 6.5903 0.7019 17 6 1.4763 2.4013 -0.1214 18 6 2.1975 -1.2688 0.0006 19 6 1.6837 -2.1760 -1.1364 20 6 1.7244 -3.6017 -0.5325 21 6 1.2808 -3.3651 0.9325 22 6 1.9413 -2.0248 1.3160 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 4.0836 0.2734 0.2176 27 1 5.3355 2.3843 0.2208 28 1 5.2704 4.7880 0.0236 29 1 3.8266 5.6469 0.0107 30 1 -0.9612 3.9219 -2.1355 31 1 0.4005 2.3980 -0.2166 32 1 3.2647 -1.0834 -0.1218 33 1 0.6634 -1.9059 -1.4086 34 1 2.3409 -2.1101 -2.0036 35 1 2.7351 -4.0081 -0.5692 36 1 1.0253 -4.2618 -1.0460 37 1 1.6438 -4.1670 1.5754 38 1 0.1954 -3.2877 0.9968 39 1 2.8841 -2.2072 1.8316 40 1 1.2725 -1.4473 1.9544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127216507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:41 Heat of formation + Delta-G solvation = 22.110474 kcal Electronic energy + Delta-G solvation = -19742.371257 eV Core-core repulsion = 16942.112552 eV Total energy + Delta-G solvation = -2800.258705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.84183 -37.34268 -34.67360 -33.44541 -31.77250 -29.53548 -28.46128 -28.00537 -27.00373 -25.16558 -23.64137 -20.99587 -20.46108 -19.96957 -18.68900 -17.26906 -16.10074 -15.77674 -15.28285 -15.02969 -14.57012 -14.52322 -13.63005 -13.41531 -12.91856 -12.80229 -12.50858 -12.09206 -11.72558 -11.48269 -11.34880 -11.27856 -11.14238 -10.98934 -10.94991 -10.87072 -10.82795 -10.43332 -10.35954 -10.09576 -9.76489 -9.50600 -9.23318 -9.01278 -7.52850 -7.18030 -6.53827 -5.46626 -4.03949 2.94123 3.13441 3.16382 3.34003 3.49475 4.04691 4.17119 4.80200 4.86730 4.90726 5.10197 5.44374 5.63331 5.69254 5.78276 5.80037 5.83459 5.89146 5.92154 6.03547 6.04274 6.23148 6.29060 6.42112 6.44976 6.46695 6.58222 6.60154 6.73288 7.15117 7.21490 7.38197 7.43456 7.77660 7.93825 7.96378 8.20442 8.49987 8.64651 8.89213 8.96388 9.04951 9.28855 9.37204 10.41560 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.006005 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.939925 B = 4661.897418 C = 5564.392243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.635 5.635 3 C 0.177 3.823 4 C -0.256 4.256 5 C -0.152 4.152 6 C 0.084 3.916 7 N -0.889 5.889 8 C 0.093 3.907 9 C -0.463 4.463 10 H 0.070 0.930 11 C 0.075 3.925 12 N -0.802 5.802 13 Si 0.904 3.096 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.200 4.200 18 C 0.156 3.844 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.139 4.139 23 H 0.032 0.968 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.374 0.626 29 H 0.388 0.612 30 H 0.275 0.725 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -8.934 2.254 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.351 5.351 3 C 0.080 3.920 4 C -0.280 4.280 5 C -0.176 4.176 6 C -0.017 4.017 7 N -0.432 5.432 8 C 0.088 3.912 9 C -0.494 4.494 10 H 0.088 0.912 11 C -0.140 4.140 12 N -0.429 5.429 13 Si 0.729 3.271 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.224 4.224 18 C 0.050 3.950 19 C -0.176 4.176 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.178 4.178 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.199 0.801 29 H 0.216 0.784 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.554 -9.185 2.146 9.449 hybrid contribution -0.327 0.976 -0.123 1.037 sum 0.227 -8.209 2.023 8.458 Atomic orbital electron populations 1.21225 0.81554 1.00667 0.99789 1.46136 1.03298 1.02208 1.83419 1.17568 0.90590 0.84885 0.98967 1.19676 0.91965 0.95804 1.20509 1.19697 0.96438 0.91549 1.09963 1.17873 0.91502 0.85455 1.06888 1.41790 1.06382 1.05777 1.89244 1.17012 0.88384 0.93424 0.92407 1.19102 1.02004 0.94772 1.33535 0.91228 1.25747 0.97558 0.96923 0.93795 1.69848 1.21717 1.30341 1.21043 0.86458 0.79394 0.82058 0.79183 1.19443 1.20618 1.19180 1.20717 0.99691 0.89374 1.12643 1.21405 0.97145 0.83849 0.92555 1.22785 1.02093 0.94251 0.98427 1.22445 1.00881 0.96919 0.95853 1.22331 1.00154 0.97227 0.96288 1.22657 1.00666 0.95814 0.98707 0.94908 0.93725 0.91821 0.89533 0.89823 0.80144 0.78419 0.91448 0.85597 0.89403 0.91097 0.91811 0.91756 0.92036 0.92279 0.92030 0.92039 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.04 8.46 59.85 0.51 2.55 16 2 N -0.63 -12.66 2.86 -170.73 -0.49 -13.14 16 3 C 0.18 4.20 6.53 -83.77 -0.55 3.66 16 4 C -0.26 -5.91 9.26 -39.14 -0.36 -6.27 16 5 C -0.15 -3.54 9.87 -39.46 -0.39 -3.93 16 6 C 0.08 2.05 6.79 -83.22 -0.56 1.49 16 7 N -0.89 -18.46 8.97 32.75 0.29 -18.17 16 8 C 0.09 2.49 5.58 -106.66 -0.60 1.90 16 9 C -0.46 -12.24 8.53 -37.91 -0.32 -12.57 16 10 H 0.07 1.75 6.63 -52.49 -0.35 1.40 16 11 C 0.08 1.91 5.20 -17.33 -0.09 1.82 16 12 N -0.80 -21.09 10.85 55.54 0.60 -20.49 16 13 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 C -0.20 -5.25 7.77 -38.75 -0.30 -5.56 16 18 C 0.16 2.58 3.19 -66.82 -0.21 2.36 16 19 C -0.14 -1.97 6.41 -25.07 -0.16 -2.13 16 20 C -0.12 -1.42 6.91 -24.74 -0.17 -1.59 16 21 C -0.12 -1.43 6.83 -25.08 -0.17 -1.60 16 22 C -0.14 -1.98 6.05 -25.61 -0.15 -2.13 16 23 H 0.03 0.61 7.87 -51.93 -0.41 0.20 16 24 H 0.04 0.69 7.32 -51.93 -0.38 0.31 16 25 H 0.06 1.26 6.45 -51.93 -0.33 0.93 16 26 H 0.09 1.81 5.83 -52.49 -0.31 1.51 16 27 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 28 H 0.37 6.58 8.84 -40.82 -0.36 6.22 16 29 H 0.39 7.88 7.04 -40.82 -0.29 7.59 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.13 3.40 4.36 -52.49 -0.23 3.17 16 32 H 0.09 1.53 5.46 -51.93 -0.28 1.25 16 33 H 0.07 1.07 6.62 -51.93 -0.34 0.73 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.07 7.39 -51.93 -0.38 0.69 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -28.18 309.97 -9.25 -37.43 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -5.76 Total: 17.65 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -3.54 Total: -22.00 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.41 Total: -51.80 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.18 -9.25 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127216507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.542 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds