Wall clock time and date at job start Mon Mar 30 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39849 * 120.00118 * 2 1 4 4 C 1.39605 * 119.84335 * 174.15955 * 3 2 1 5 5 C 1.38048 * 120.55291 * 179.97438 * 4 3 2 6 6 C 1.38743 * 120.22220 * 0.25664 * 5 4 3 7 7 N 1.38855 * 120.16619 * 179.74554 * 6 5 4 8 8 C 1.41568 * 119.66890 * 359.51932 * 6 5 4 9 9 C 1.41028 * 120.26466 * 180.21158 * 8 6 5 10 10 H 1.08001 * 120.00062 * 333.89942 * 9 8 6 11 11 C 1.39884 * 120.00119 * 153.90994 * 9 8 6 12 12 N 1.30898 * 119.99644 * 345.98406 * 11 9 8 13 13 Si 1.86795 * 120.00130 * 165.98535 * 11 9 8 14 14 H 1.48497 * 109.47080 * 59.99898 * 13 11 9 15 15 H 1.48504 * 109.47034 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47297 * 299.99703 * 13 11 9 17 17 C 1.38008 * 119.84068 * 354.18097 * 3 2 1 18 18 C 1.46503 * 119.99885 * 179.97438 * 2 1 3 19 19 C 1.54262 * 110.02962 * 51.70114 * 18 2 1 20 20 C 1.54896 * 104.19270 * 217.10250 * 19 18 2 21 21 C 1.54881 * 102.74794 * 37.94179 * 20 19 18 22 22 C 1.53870 * 110.03460 * 294.52910 * 18 2 1 23 23 H 1.08998 * 109.47597 * 89.99833 * 1 2 3 24 24 H 1.09000 * 109.46806 * 210.00524 * 1 2 3 25 25 H 1.09001 * 109.47092 * 329.99765 * 1 2 3 26 26 H 1.08001 * 119.72012 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.89206 * 179.97438 * 5 4 3 28 28 H 0.96998 * 120.00269 * 5.28372 * 7 6 5 29 29 H 0.97004 * 120.00412 * 185.28875 * 7 6 5 30 30 H 0.97007 * 119.99918 * 185.04881 * 12 11 9 31 31 H 1.08002 * 120.11458 * 359.97270 * 17 3 2 32 32 H 1.09006 * 110.01211 * 173.14058 * 18 2 1 33 33 H 1.08997 * 110.49182 * 335.78087 * 19 18 2 34 34 H 1.08999 * 110.49013 * 98.42385 * 19 18 2 35 35 H 1.08996 * 110.75409 * 279.62603 * 20 19 18 36 36 H 1.09003 * 110.91106 * 156.33159 * 20 19 18 37 37 H 1.09002 * 110.49217 * 203.37587 * 21 20 19 38 38 H 1.09004 * 110.60027 * 80.79067 * 21 20 19 39 39 H 1.08996 * 110.03601 * 238.56891 * 22 18 2 40 40 H 1.09005 * 110.03092 * 359.95655 * 22 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1643 1.2111 0.0000 4 6 3.5549 1.2104 0.1232 5 6 4.2599 2.3973 0.1244 6 6 3.5907 3.6071 0.0081 7 7 4.3005 4.8005 0.0148 8 6 2.1811 3.6186 -0.1222 9 6 1.4886 4.8409 -0.2457 10 1 1.9135 5.7459 0.1628 11 6 0.2514 4.8812 -0.8972 12 7 -0.1382 3.8654 -1.6251 13 14 -0.8445 6.3844 -0.7286 14 1 -0.1287 7.5791 -1.2437 15 1 -2.0903 6.1790 -1.5103 16 1 -1.1856 6.5903 0.7019 17 6 1.4763 2.4013 -0.1214 18 6 2.1975 -1.2688 0.0006 19 6 1.6837 -2.1760 -1.1364 20 6 1.7244 -3.6017 -0.5325 21 6 1.2808 -3.3651 0.9325 22 6 1.9413 -2.0248 1.3160 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 4.0836 0.2734 0.2176 27 1 5.3355 2.3843 0.2208 28 1 5.2704 4.7880 0.0236 29 1 3.8266 5.6469 0.0107 30 1 -0.9612 3.9219 -2.1355 31 1 0.4005 2.3980 -0.2166 32 1 3.2647 -1.0834 -0.1218 33 1 0.6634 -1.9059 -1.4086 34 1 2.3409 -2.1101 -2.0036 35 1 2.7351 -4.0081 -0.5692 36 1 1.0253 -4.2618 -1.0460 37 1 1.6438 -4.1670 1.5754 38 1 0.1954 -3.2877 0.9968 39 1 2.8841 -2.2072 1.8316 40 1 1.2725 -1.4473 1.9544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127216507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:41 Heat of formation + Delta-G solvation = 6.912519 kcal Electronic energy + Delta-G solvation = -19743.030290 eV Core-core repulsion = 16942.112552 eV Total energy + Delta-G solvation = -2800.917738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33258 -38.92889 -36.19254 -35.33723 -33.42572 -31.40187 -29.54609 -29.39629 -28.69951 -26.94340 -25.26690 -22.82894 -21.59458 -21.44215 -20.22543 -18.98856 -17.83743 -17.37617 -16.90970 -16.50135 -16.13927 -15.96443 -15.10861 -14.80401 -14.51096 -14.28143 -14.11460 -13.74066 -13.49769 -13.21635 -12.84714 -12.82312 -12.70247 -12.48764 -12.42931 -12.04941 -11.92597 -11.89443 -11.66864 -11.43949 -11.38999 -11.19556 -11.04001 -10.86536 -9.20814 -9.08868 -8.43720 -7.23674 -5.99178 1.14205 1.40951 1.50337 1.53453 1.65399 2.27370 2.65975 2.93487 3.75191 3.79436 3.79687 3.99028 4.05314 4.40052 4.48199 4.56739 4.63684 4.65055 4.68960 4.79510 4.86944 4.90675 4.95368 5.05679 5.11280 5.23339 5.25392 5.32446 5.40236 5.42749 5.50727 5.51825 5.63601 5.92937 6.10087 6.16178 6.34590 6.59619 6.90652 7.06215 7.11723 7.21171 7.48634 7.67559 8.53405 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.006005 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.939925 B = 4661.897418 C = 5564.392243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.638 5.638 3 C 0.169 3.831 4 C -0.260 4.260 5 C -0.158 4.158 6 C 0.068 3.932 7 N -0.879 5.879 8 C 0.057 3.943 9 C -0.491 4.491 10 H 0.073 0.927 11 C 0.032 3.968 12 N -0.835 5.835 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.265 1.265 17 C -0.225 4.225 18 C 0.147 3.853 19 C -0.136 4.136 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.135 4.135 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.390 0.610 29 H 0.389 0.611 30 H 0.278 0.722 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 -10.221 2.636 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.353 5.353 3 C 0.071 3.929 4 C -0.283 4.283 5 C -0.182 4.182 6 C -0.034 4.034 7 N -0.423 5.423 8 C 0.052 3.948 9 C -0.522 4.522 10 H 0.091 0.909 11 C -0.180 4.180 12 N -0.462 5.462 13 Si 0.798 3.202 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.190 1.190 17 C -0.250 4.250 18 C 0.043 3.957 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.174 4.174 23 H 0.043 0.957 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.218 0.782 29 H 0.217 0.783 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.926 -10.499 2.532 10.840 hybrid contribution -0.358 1.285 -0.237 1.355 sum 0.568 -9.214 2.295 9.512 Atomic orbital electron populations 1.21175 0.81004 1.01009 0.99400 1.46333 1.03849 1.02298 1.82793 1.17730 0.91289 0.85733 0.98181 1.20002 0.91843 0.96868 1.19614 1.20046 0.97867 0.91164 1.09125 1.18051 0.91208 0.87093 1.07073 1.41659 1.07170 1.04777 1.88718 1.17420 0.89874 0.93955 0.93556 1.19371 1.03273 0.94986 1.34615 0.90852 1.26567 0.98440 1.00009 0.93004 1.69948 1.22233 1.32280 1.21775 0.85349 0.77426 0.78351 0.79043 1.18585 1.19965 1.19010 1.20720 0.99173 0.90606 1.14479 1.21680 0.96269 0.82867 0.94932 1.22749 1.01196 0.95857 0.97644 1.22420 1.02217 0.95014 0.95426 1.22313 1.00176 0.96159 0.96673 1.22584 1.01118 0.96712 0.96986 0.95654 0.90574 0.94116 0.87333 0.87159 0.78249 0.78262 0.91162 0.87297 0.90440 0.92045 0.92213 0.90498 0.90285 0.90083 0.91751 0.91156 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.39 8.46 127.77 1.08 5.47 16 2 N -0.64 -25.57 2.86 -694.05 -1.99 -27.56 16 3 C 0.17 8.21 6.53 38.14 0.25 8.46 16 4 C -0.26 -11.90 9.26 22.55 0.21 -11.70 16 5 C -0.16 -7.24 9.87 22.35 0.22 -7.02 16 6 C 0.07 3.35 6.79 38.97 0.26 3.61 16 7 N -0.88 -36.20 8.97 -50.31 -0.45 -36.65 16 8 C 0.06 3.16 5.58 -21.18 -0.12 3.04 16 9 C -0.49 -26.70 8.53 23.35 0.20 -26.51 16 10 H 0.07 3.77 6.63 -2.91 -0.02 3.75 16 11 C 0.03 1.67 5.20 85.23 0.44 2.11 16 12 N -0.83 -45.35 10.85 21.82 0.24 -45.12 16 13 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 15 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 16 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 17 C -0.23 -12.30 7.77 22.81 0.18 -12.13 16 18 C 0.15 4.68 3.19 45.71 0.15 4.83 16 19 C -0.14 -3.68 6.41 31.67 0.20 -3.48 16 20 C -0.11 -2.23 6.91 31.88 0.22 -2.01 16 21 C -0.12 -2.32 6.83 31.67 0.22 -2.10 16 22 C -0.13 -3.56 6.05 31.32 0.19 -3.37 16 23 H 0.02 0.97 7.87 -2.39 -0.02 0.95 16 24 H 0.08 2.30 7.32 -2.39 -0.02 2.29 16 25 H 0.04 1.69 6.45 -2.39 -0.02 1.67 16 26 H 0.11 4.40 5.83 -2.91 -0.02 4.39 16 27 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 28 H 0.39 13.28 8.84 -92.71 -0.82 12.46 16 29 H 0.39 15.81 7.04 -92.71 -0.65 15.16 16 30 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 31 H 0.11 6.22 4.36 -2.91 -0.01 6.21 16 32 H 0.08 2.61 5.46 -2.38 -0.01 2.60 16 33 H 0.06 1.78 6.62 -2.39 -0.02 1.77 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.59 7.39 -2.38 -0.02 1.57 16 Total: -1.00 -62.11 309.97 3.12 -58.99 By element: Atomic # 1 Polarization: 49.76 SS G_CDS: -0.41 Total: 49.36 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 3.70 Total: -40.79 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -2.20 Total: -109.32 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -62.11 3.12 -58.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127216507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.905 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds