Wall clock time and date at job start Mon Mar 30 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47493 * 2 1 4 4 N 1.46498 * 109.47723 * 179.97438 * 3 2 1 5 5 C 1.39863 * 119.99497 * 90.00042 * 4 3 2 6 6 C 1.39599 * 119.83467 * 174.56395 * 5 4 3 7 7 C 1.38061 * 120.54535 * 179.97438 * 6 5 4 8 8 C 1.38728 * 120.22272 * 359.95740 * 7 6 5 9 9 N 1.38864 * 120.16375 * 180.02562 * 8 7 6 10 10 C 1.41567 * 119.67649 * 0.02562 * 8 7 6 11 11 C 1.41015 * 120.27203 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99954 * 29.49837 * 11 10 8 13 13 C 1.39888 * 120.00366 * 209.49270 * 11 10 8 14 14 N 1.30899 * 119.99867 * 9.77316 * 13 11 10 15 15 Si 1.86806 * 119.99973 * 189.76769 * 13 11 10 16 16 H 1.48495 * 109.46847 * 90.00133 * 15 13 11 17 17 H 1.48497 * 109.46973 * 210.00059 * 15 13 11 18 18 H 1.48499 * 109.47272 * 330.00358 * 15 13 11 19 19 C 1.38006 * 119.83937 * 354.28680 * 5 4 3 20 20 C 1.46499 * 120.00389 * 270.00418 * 4 3 2 21 21 C 1.52995 * 117.49728 * 12.49169 * 20 4 3 22 22 C 1.52997 * 60.00284 * 252.51671 * 21 20 4 23 23 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47124 * 299.99959 * 1 2 3 25 25 H 1.08997 * 109.46757 * 60.00408 * 1 2 3 26 26 H 1.08997 * 109.47638 * 239.99962 * 2 1 3 27 27 H 1.09005 * 109.47374 * 120.00143 * 2 1 3 28 28 H 1.09011 * 109.47181 * 59.99674 * 3 2 1 29 29 H 1.08999 * 109.47264 * 300.00170 * 3 2 1 30 30 H 1.07999 * 119.72768 * 359.97438 * 6 5 4 31 31 H 1.08003 * 119.88350 * 179.97438 * 7 6 5 32 32 H 0.96995 * 120.00250 * 5.20858 * 9 8 7 33 33 H 0.97008 * 119.99981 * 185.20075 * 9 8 7 34 34 H 0.97001 * 119.99717 * 184.99415 * 14 13 11 35 35 H 1.07997 * 120.11547 * 0.02562 * 19 5 4 36 36 H 1.08996 * 115.54858 * 158.20245 * 20 4 3 37 37 H 1.09004 * 117.50174 * 0.02562 * 21 20 4 38 38 H 1.09001 * 117.49837 * 145.01922 * 21 20 4 39 39 H 1.09004 * 117.49367 * 252.51812 * 22 21 20 40 40 H 1.08995 * 117.50407 * 107.49515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2047 1.4423 -1.2104 6 6 5.5960 1.5571 -1.2086 7 6 6.3014 1.5581 -2.3954 8 6 5.6326 1.4437 -3.6054 9 7 6.3435 1.4443 -4.7983 10 6 4.2219 1.3264 -3.6182 11 6 3.5293 1.2100 -4.8410 12 1 4.0079 0.7459 -5.6907 13 6 2.2222 1.6956 -4.9535 14 7 1.7100 2.4245 -3.9945 15 14 1.2079 1.3041 -6.4726 16 1 0.4555 0.0427 -6.2537 17 1 0.2529 2.4119 -6.7292 18 1 2.1090 1.1463 -7.6423 19 6 3.5169 1.3230 -2.4009 20 6 4.2371 1.4426 1.2696 21 6 3.4423 1.1491 2.5436 22 6 3.9347 2.5696 2.2593 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 6.1249 1.6459 -0.2712 31 1 7.3777 1.6479 -2.3816 32 1 7.3133 1.4485 -4.7850 33 1 5.8700 1.4403 -5.6451 34 1 0.7811 2.7005 -4.0384 35 1 2.4409 1.2303 -2.3981 36 1 5.2629 1.0775 1.2205 37 1 2.3749 0.9555 2.4376 38 1 3.9452 0.5906 3.3330 39 1 4.7617 2.9455 2.8618 40 1 3.1913 3.3108 1.9664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127217085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:33 Heat of formation + Delta-G solvation = 48.621736 kcal Electronic energy + Delta-G solvation = -19858.939132 eV Core-core repulsion = 17059.830041 eV Total energy + Delta-G solvation = -2799.109091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.71905 -37.09234 -34.48629 -33.51560 -33.10882 -30.73906 -29.39714 -26.66945 -25.92005 -24.20270 -22.13628 -21.72245 -20.76005 -20.56172 -18.82265 -17.47619 -16.02072 -15.90861 -15.26391 -14.75533 -14.62719 -14.30445 -13.89290 -13.34309 -12.82888 -12.73389 -12.41523 -12.17284 -11.90152 -11.46835 -11.35120 -11.26854 -11.26020 -11.03419 -10.96212 -10.91872 -10.44573 -10.34841 -10.22484 -10.03814 -9.72532 -9.39794 -9.21332 -9.05812 -7.52138 -7.15944 -6.55828 -5.48705 -4.07724 2.91926 3.15112 3.17365 3.30759 3.42613 3.96547 4.06155 4.27819 4.84738 5.19747 5.25531 5.35357 5.42404 5.43694 5.53917 5.76987 5.82821 5.86406 5.91555 6.08366 6.20616 6.22708 6.31109 6.35855 6.38825 6.43542 6.64051 6.67610 6.82149 7.13499 7.18941 7.35449 7.39337 7.75017 7.89415 7.91556 8.17225 8.48100 8.59144 8.84404 8.96008 9.01849 9.26043 9.33935 10.43067 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.007855 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.278601 B = 3563.563540 C = 4903.493280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.131 3.869 4 N -0.607 5.607 5 C 0.172 3.828 6 C -0.245 4.245 7 C -0.155 4.155 8 C 0.089 3.911 9 N -0.888 5.888 10 C 0.090 3.910 11 C -0.463 4.463 12 H 0.069 0.931 13 C 0.076 3.924 14 N -0.809 5.809 15 Si 0.901 3.099 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.266 1.266 19 C -0.188 4.188 20 C 0.118 3.882 21 C -0.203 4.203 22 C -0.212 4.212 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.374 0.626 33 H 0.389 0.611 34 H 0.273 0.727 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -2.040 7.096 7.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.007 3.993 4 N -0.319 5.319 5 C 0.076 3.924 6 C -0.268 4.268 7 C -0.179 4.179 8 C -0.012 4.012 9 N -0.431 5.431 10 C 0.085 3.915 11 C -0.495 4.495 12 H 0.087 0.913 13 C -0.138 4.138 14 N -0.437 5.437 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.212 4.212 20 C 0.011 3.989 21 C -0.242 4.242 22 C -0.251 4.251 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.199 0.801 33 H 0.217 0.783 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.504 -1.849 7.242 7.492 hybrid contribution -0.366 -0.052 -0.826 0.904 sum -0.870 -1.901 6.417 6.749 Atomic orbital electron populations 1.21691 0.96290 1.01070 1.01497 1.22014 0.94957 0.98878 1.02291 1.21233 0.80638 0.95521 1.01864 1.45644 1.02936 1.82020 1.01325 1.17515 0.90504 0.99912 0.84451 1.19698 0.91832 1.19355 0.95947 1.19721 0.96528 1.10171 0.91520 1.17925 0.92008 1.05822 0.85444 1.41821 1.06391 1.89018 1.05862 1.17022 0.88472 0.92718 0.93308 1.19122 0.98226 1.34849 0.97280 0.91253 1.25692 0.98146 0.92665 0.97336 1.69834 1.14068 1.27069 1.32702 0.86436 0.79880 0.78590 0.82450 1.19737 1.20645 1.19026 1.20741 0.99926 1.11592 0.88931 1.21252 0.96200 1.00289 0.81144 1.23352 1.01026 0.99352 1.00443 1.23407 1.03903 0.92254 1.05573 0.93224 0.93421 0.92429 0.91229 0.92693 0.92928 0.89667 0.89507 0.89709 0.80131 0.78284 0.91576 0.85463 0.86359 0.88716 0.89069 0.89210 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.35 6.03 -26.74 -0.16 -2.51 16 3 C 0.13 2.38 4.29 -4.04 -0.02 2.36 16 4 N -0.61 -11.95 2.96 -164.19 -0.49 -12.43 16 5 C 0.17 4.02 6.53 -83.77 -0.55 3.47 16 6 C -0.24 -5.57 9.26 -39.14 -0.36 -5.93 16 7 C -0.16 -3.55 9.87 -39.47 -0.39 -3.94 16 8 C 0.09 2.15 6.79 -83.23 -0.56 1.59 16 9 N -0.89 -18.20 8.97 32.75 0.29 -17.91 16 10 C 0.09 2.37 5.56 -106.66 -0.59 1.78 16 11 C -0.46 -12.09 8.38 -37.91 -0.32 -12.41 16 12 H 0.07 1.74 6.87 -52.48 -0.36 1.38 16 13 C 0.08 1.91 5.26 -17.33 -0.09 1.82 16 14 N -0.81 -20.88 10.84 55.55 0.60 -20.27 16 15 Si 0.90 18.99 29.58 -169.99 -5.03 13.96 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 C -0.19 -4.82 7.65 -38.75 -0.30 -5.11 16 20 C 0.12 1.96 5.97 -67.93 -0.41 1.56 16 21 C -0.20 -2.76 9.51 -26.73 -0.25 -3.01 16 22 C -0.21 -3.04 10.04 -26.73 -0.27 -3.31 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 27 H 0.05 0.86 7.30 -51.93 -0.38 0.48 16 28 H 0.05 0.85 6.26 -51.92 -0.32 0.53 16 29 H 0.09 1.78 6.44 -51.93 -0.33 1.44 16 30 H 0.09 1.78 6.16 -52.49 -0.32 1.46 16 31 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.37 6.47 8.84 -40.82 -0.36 6.11 16 33 H 0.39 7.86 7.17 -40.82 -0.29 7.56 16 34 H 0.27 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.13 3.33 4.30 -52.49 -0.23 3.10 16 36 H 0.12 1.94 6.43 -51.93 -0.33 1.61 16 37 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.37 7.89 -51.93 -0.41 0.96 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -27.44 317.26 -9.47 -36.91 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -5.73 Total: 20.31 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -3.90 Total: -25.36 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.41 Total: -50.61 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.44 -9.47 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127217085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.536 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds