Wall clock time and date at job start Mon Mar 30 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47493 * 2 1 4 4 N 1.46498 * 109.47723 * 179.97438 * 3 2 1 5 5 C 1.39863 * 119.99497 * 90.00042 * 4 3 2 6 6 C 1.39599 * 119.83467 * 174.56395 * 5 4 3 7 7 C 1.38061 * 120.54535 * 179.97438 * 6 5 4 8 8 C 1.38728 * 120.22272 * 359.95740 * 7 6 5 9 9 N 1.38864 * 120.16375 * 180.02562 * 8 7 6 10 10 C 1.41567 * 119.67649 * 0.02562 * 8 7 6 11 11 C 1.41015 * 120.27203 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99954 * 29.49837 * 11 10 8 13 13 C 1.39888 * 120.00366 * 209.49270 * 11 10 8 14 14 N 1.30899 * 119.99867 * 9.77316 * 13 11 10 15 15 Si 1.86806 * 119.99973 * 189.76769 * 13 11 10 16 16 H 1.48495 * 109.46847 * 90.00133 * 15 13 11 17 17 H 1.48497 * 109.46973 * 210.00059 * 15 13 11 18 18 H 1.48499 * 109.47272 * 330.00358 * 15 13 11 19 19 C 1.38006 * 119.83937 * 354.28680 * 5 4 3 20 20 C 1.46499 * 120.00389 * 270.00418 * 4 3 2 21 21 C 1.52995 * 117.49728 * 12.49169 * 20 4 3 22 22 C 1.52997 * 60.00284 * 252.51671 * 21 20 4 23 23 H 1.08997 * 109.47005 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47124 * 299.99959 * 1 2 3 25 25 H 1.08997 * 109.46757 * 60.00408 * 1 2 3 26 26 H 1.08997 * 109.47638 * 239.99962 * 2 1 3 27 27 H 1.09005 * 109.47374 * 120.00143 * 2 1 3 28 28 H 1.09011 * 109.47181 * 59.99674 * 3 2 1 29 29 H 1.08999 * 109.47264 * 300.00170 * 3 2 1 30 30 H 1.07999 * 119.72768 * 359.97438 * 6 5 4 31 31 H 1.08003 * 119.88350 * 179.97438 * 7 6 5 32 32 H 0.96995 * 120.00250 * 5.20858 * 9 8 7 33 33 H 0.97008 * 119.99981 * 185.20075 * 9 8 7 34 34 H 0.97001 * 119.99717 * 184.99415 * 14 13 11 35 35 H 1.07997 * 120.11547 * 0.02562 * 19 5 4 36 36 H 1.08996 * 115.54858 * 158.20245 * 20 4 3 37 37 H 1.09004 * 117.50174 * 0.02562 * 21 20 4 38 38 H 1.09001 * 117.49837 * 145.01922 * 21 20 4 39 39 H 1.09004 * 117.49367 * 252.51812 * 22 21 20 40 40 H 1.08995 * 117.50407 * 107.49515 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2047 1.4423 -1.2104 6 6 5.5960 1.5571 -1.2086 7 6 6.3014 1.5581 -2.3954 8 6 5.6326 1.4437 -3.6054 9 7 6.3435 1.4443 -4.7983 10 6 4.2219 1.3264 -3.6182 11 6 3.5293 1.2100 -4.8410 12 1 4.0079 0.7459 -5.6907 13 6 2.2222 1.6956 -4.9535 14 7 1.7100 2.4245 -3.9945 15 14 1.2079 1.3041 -6.4726 16 1 0.4555 0.0427 -6.2537 17 1 0.2529 2.4119 -6.7292 18 1 2.1090 1.1463 -7.6423 19 6 3.5169 1.3230 -2.4009 20 6 4.2371 1.4426 1.2696 21 6 3.4423 1.1491 2.5436 22 6 3.9347 2.5696 2.2593 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 6.1249 1.6459 -0.2712 31 1 7.3777 1.6479 -2.3816 32 1 7.3133 1.4485 -4.7850 33 1 5.8700 1.4403 -5.6451 34 1 0.7811 2.7005 -4.0384 35 1 2.4409 1.2303 -2.3981 36 1 5.2629 1.0775 1.2205 37 1 2.3749 0.9555 2.4376 38 1 3.9452 0.5906 3.3330 39 1 4.7617 2.9455 2.8618 40 1 3.1913 3.3108 1.9664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127217085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:33 Heat of formation + Delta-G solvation = 34.312154 kcal Electronic energy + Delta-G solvation = -19859.559642 eV Core-core repulsion = 17059.830041 eV Total energy + Delta-G solvation = -2799.729601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27458 -38.68600 -35.85994 -35.36237 -34.68727 -32.26237 -31.26650 -28.30481 -27.59115 -25.86423 -23.40157 -23.07688 -22.30351 -22.22653 -20.42448 -19.13820 -17.77513 -17.53032 -16.94089 -16.40740 -16.20450 -15.61977 -15.34650 -14.75476 -14.43816 -14.23163 -14.06512 -13.80222 -13.59275 -13.03696 -12.90168 -12.85179 -12.65517 -12.58216 -12.44458 -12.21769 -12.04406 -11.82026 -11.67977 -11.56376 -11.16587 -11.08180 -10.92551 -10.88632 -9.16674 -8.99518 -8.42776 -7.20225 -6.00321 1.13750 1.41267 1.51657 1.51880 1.63529 2.29111 2.51678 2.93363 3.12637 3.77807 3.96216 3.97917 4.05944 4.09160 4.15342 4.34010 4.48093 4.56143 4.65603 4.79605 4.81353 4.83912 4.96766 5.00704 5.09710 5.18530 5.26468 5.29558 5.30589 5.40805 5.46805 5.52152 5.63898 5.94227 6.09890 6.15778 6.34862 6.60656 6.91371 7.07975 7.11407 7.20350 7.48039 7.67733 8.57107 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.007855 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.278601 B = 3563.563540 C = 4903.493280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.135 3.865 4 N -0.611 5.611 5 C 0.166 3.834 6 C -0.249 4.249 7 C -0.161 4.161 8 C 0.072 3.928 9 N -0.879 5.879 10 C 0.052 3.948 11 C -0.490 4.490 12 H 0.070 0.930 13 C 0.034 3.966 14 N -0.838 5.838 15 Si 0.970 3.030 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.260 1.260 19 C -0.209 4.209 20 C 0.082 3.918 21 C -0.177 4.177 22 C -0.202 4.202 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.390 0.610 33 H 0.390 0.610 34 H 0.277 0.723 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -2.344 8.646 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.012 3.988 4 N -0.323 5.323 5 C 0.068 3.932 6 C -0.272 4.272 7 C -0.185 4.185 8 C -0.030 4.030 9 N -0.423 5.423 10 C 0.047 3.953 11 C -0.522 4.522 12 H 0.088 0.912 13 C -0.178 4.178 14 N -0.467 5.467 15 Si 0.793 3.207 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.233 4.233 20 C -0.024 4.024 21 C -0.215 4.215 22 C -0.241 4.241 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.218 0.782 33 H 0.218 0.782 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.348 -2.154 8.822 9.087 hybrid contribution -0.336 0.063 -1.175 1.224 sum -0.684 -2.091 7.646 7.956 Atomic orbital electron populations 1.21650 0.94288 1.02180 1.01835 1.21889 0.96656 0.97414 1.01155 1.21202 0.80169 0.96375 1.01085 1.45751 1.03436 1.81676 1.01435 1.17661 0.91169 0.99020 0.85364 1.20032 0.91749 1.18438 0.96991 1.20065 0.97931 1.09383 0.91146 1.18105 0.91717 1.06086 0.87055 1.41690 1.07172 1.88535 1.04859 1.17429 0.89969 0.94033 0.93847 1.19336 0.99362 1.35974 0.97495 0.91199 1.26469 0.98901 0.92216 1.00196 1.69926 1.14445 1.27859 1.34485 0.85377 0.78188 0.78298 0.78847 1.19434 1.20169 1.18364 1.20741 0.99449 1.13093 0.90047 1.21499 0.96738 1.03382 0.80763 1.23420 1.00915 0.98650 0.98506 1.23424 1.04228 0.92236 1.04237 0.91734 0.91098 0.94040 0.94803 0.91166 0.90639 0.93300 0.87212 0.87093 0.78238 0.78243 0.91294 0.87018 0.86342 0.88545 0.86414 0.87098 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.36 6.03 30.59 0.18 -4.17 16 3 C 0.14 4.94 4.29 86.38 0.37 5.31 16 4 N -0.61 -24.02 2.96 -673.38 -1.99 -26.01 16 5 C 0.17 7.90 6.53 38.13 0.25 8.15 16 6 C -0.25 -11.20 9.26 22.56 0.21 -10.99 16 7 C -0.16 -7.30 9.87 22.34 0.22 -7.08 16 8 C 0.07 3.55 6.79 38.97 0.26 3.82 16 9 N -0.88 -35.96 8.97 -50.31 -0.45 -36.41 16 10 C 0.05 2.87 5.56 -21.18 -0.12 2.75 16 11 C -0.49 -26.50 8.38 23.35 0.20 -26.30 16 12 H 0.07 3.61 6.87 -2.91 -0.02 3.59 16 13 C 0.03 1.74 5.26 85.23 0.45 2.19 16 14 N -0.84 -45.11 10.84 21.82 0.24 -44.88 16 15 Si 0.97 39.84 29.58 68.60 2.03 41.87 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 19 C -0.21 -11.20 7.65 22.81 0.17 -11.03 16 20 C 0.08 2.56 5.97 44.99 0.27 2.83 16 21 C -0.18 -4.19 9.51 30.59 0.29 -3.90 16 22 C -0.20 -5.23 10.04 30.59 0.31 -4.93 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.03 1.34 7.94 -2.39 -0.02 1.32 16 27 H 0.07 2.08 7.30 -2.38 -0.02 2.06 16 28 H 0.08 2.36 6.26 -2.38 -0.01 2.35 16 29 H 0.05 2.15 6.44 -2.39 -0.02 2.13 16 30 H 0.11 4.34 6.16 -2.91 -0.02 4.32 16 31 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.39 13.14 8.84 -92.71 -0.82 12.32 16 33 H 0.39 15.88 7.17 -92.70 -0.66 15.21 16 34 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 35 H 0.11 6.23 4.30 -2.91 -0.01 6.22 16 36 H 0.12 3.66 6.43 -2.39 -0.02 3.64 16 37 H 0.10 2.28 5.88 -2.38 -0.01 2.27 16 38 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.08 2.26 7.89 -2.39 -0.02 2.24 16 Total: -1.00 -61.23 317.26 3.18 -58.05 By element: Atomic # 1 Polarization: 54.30 SS G_CDS: -0.42 Total: 53.88 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 3.78 Total: -46.51 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -2.21 Total: -107.30 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -61.23 3.18 -58.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127217085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.364 kcal (2) G-P(sol) polarization free energy of solvation -61.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds