Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.53002 * 109.47156 * 240.00034 * 2 1 3 5 5 C 1.53004 * 117.49726 * 128.62018 * 4 2 1 6 6 C 1.52999 * 60.00209 * 252.51083 * 5 4 2 7 7 N 1.46499 * 109.47133 * 120.00138 * 2 1 3 8 8 C 1.46493 * 119.99984 * 54.81341 * 7 2 1 9 9 C 1.39853 * 120.00082 * 234.53495 * 7 2 1 10 10 C 1.39603 * 119.83837 * 353.97104 * 9 7 2 11 11 C 1.38058 * 120.54928 * 179.71493 * 10 9 7 12 12 C 1.38738 * 120.21841 * 0.55642 * 11 10 9 13 13 N 1.38868 * 120.16393 * 179.74337 * 12 11 10 14 14 C 1.41566 * 119.67520 * 359.72020 * 12 11 10 15 15 C 1.41023 * 120.26735 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00466 * 332.72550 * 15 14 12 17 17 C 1.39884 * 119.99623 * 152.72354 * 15 14 12 18 18 N 1.30901 * 120.00567 * 346.58119 * 17 15 14 19 19 Si 1.86802 * 119.99943 * 166.58053 * 17 15 14 20 20 H 1.48503 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46812 * 120.00044 * 19 17 15 22 22 H 1.48503 * 109.47266 * 240.00075 * 19 17 15 23 23 C 1.38001 * 119.84151 * 174.23886 * 9 7 2 24 24 H 1.09000 * 109.47301 * 300.00102 * 1 2 3 25 25 H 1.09000 * 109.46937 * 59.99805 * 1 2 3 26 26 H 1.08993 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08995 * 115.55110 * 274.32963 * 4 2 1 28 28 H 1.08999 * 117.49835 * 0.02562 * 5 4 2 29 29 H 1.09006 * 117.49715 * 145.01980 * 5 4 2 30 30 H 1.08999 * 117.50294 * 252.51529 * 6 5 4 31 31 H 1.08998 * 117.51538 * 107.47679 * 6 5 4 32 32 H 1.09006 * 109.47336 * 269.72491 * 8 7 2 33 33 H 1.09000 * 109.47387 * 29.72045 * 8 7 2 34 34 H 1.09001 * 109.47361 * 149.73009 * 8 7 2 35 35 H 1.08000 * 119.72734 * 0.02562 * 10 9 7 36 36 H 1.08001 * 119.89127 * 180.27854 * 11 10 9 37 37 H 0.97000 * 119.99831 * 185.21415 * 13 12 11 38 38 H 0.97000 * 119.99748 * 5.21331 * 13 12 11 39 39 H 0.96995 * 120.00817 * 185.03538 * 18 17 15 40 40 H 1.08000 * 120.11700 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1495 -2.6097 7 7 2.0183 -0.6906 1.1961 8 6 1.5732 -2.0557 1.4868 9 6 2.9139 -0.0489 2.0575 10 6 3.4382 1.1978 1.7113 11 6 4.3188 1.8471 2.5533 12 6 4.7018 1.2598 3.7505 13 7 5.5918 1.9115 4.5941 14 6 4.1804 -0.0068 4.1082 15 6 4.5616 -0.6154 5.3219 16 1 5.5212 -0.3879 5.7622 17 6 3.6967 -1.5138 5.9556 18 7 2.4458 -1.5948 5.5785 19 14 4.3268 -2.5982 7.3400 20 1 5.7659 -2.3160 7.5739 21 1 3.5594 -2.3146 8.5793 22 1 4.1559 -4.0256 6.9677 23 6 3.2795 -0.6536 3.2429 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.1267 -1.8044 -1.1643 28 1 3.3914 0.9968 -1.7889 29 1 3.8416 -0.6001 -2.5942 30 1 1.4568 -0.8565 -3.4197 31 1 1.0061 0.7403 -2.6146 32 1 0.6737 -2.0215 2.1015 33 1 1.3553 -2.5735 0.5527 34 1 2.3593 -2.5879 2.0225 35 1 3.1486 1.6605 0.7794 36 1 4.7144 2.8133 2.2770 37 1 5.9165 1.4673 5.3929 38 1 5.8887 2.8108 4.3845 39 1 1.8284 -2.1634 6.0647 40 1 2.8749 -1.6199 3.5056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127234101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = 55.295452 kcal Electronic energy + Delta-G solvation = -19707.977903 eV Core-core repulsion = 16909.158206 eV Total energy + Delta-G solvation = -2798.819697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.72103 -37.33353 -35.20207 -33.43534 -32.24278 -30.15485 -29.29444 -27.01566 -25.89797 -24.29797 -22.95059 -22.10330 -20.95915 -19.86063 -18.84528 -17.32376 -15.95196 -15.79393 -15.29631 -14.88944 -14.58651 -14.34660 -13.82937 -13.33141 -12.79764 -12.53386 -12.46671 -12.23944 -11.84679 -11.73783 -11.67479 -11.46958 -11.26469 -11.15428 -10.97761 -10.83965 -10.42894 -10.33549 -10.16243 -9.83439 -9.63711 -9.50548 -9.22994 -9.02849 -7.54354 -7.17086 -6.53455 -5.46976 -4.04155 2.91781 3.15086 3.19222 3.32990 3.49342 3.90484 4.05337 4.24697 4.83188 4.90761 5.13507 5.20786 5.44009 5.55027 5.64350 5.73275 5.77357 5.82964 5.91917 6.00584 6.05927 6.19471 6.26833 6.31449 6.41303 6.43744 6.52202 6.60277 6.72171 7.15289 7.21041 7.38230 7.43075 7.77309 7.93157 7.95908 8.20273 8.50129 8.63854 8.88713 8.96854 9.04779 9.28814 9.37056 10.42453 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.006069 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.237200 B = 4612.816189 C = 5412.936500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.184 3.816 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.175 4.175 6 C -0.183 4.183 7 N -0.633 5.633 8 C 0.111 3.889 9 C 0.178 3.822 10 C -0.253 4.253 11 C -0.153 4.153 12 C 0.085 3.915 13 N -0.889 5.889 14 C 0.092 3.908 15 C -0.463 4.463 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.804 5.804 19 Si 0.903 3.097 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.275 1.275 23 C -0.198 4.198 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.374 0.626 39 H 0.273 0.727 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 0.618 -8.917 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.079 3.921 3 H 0.106 0.894 4 C -0.176 4.176 5 C -0.212 4.212 6 C -0.221 4.221 7 N -0.349 5.349 8 C -0.033 4.033 9 C 0.081 3.919 10 C -0.277 4.277 11 C -0.177 4.177 12 C -0.016 4.016 13 N -0.432 5.432 14 C 0.087 3.913 15 C -0.494 4.494 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.431 5.431 19 Si 0.728 3.272 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.201 1.201 23 C -0.222 4.222 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.084 0.916 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.335 0.313 -8.987 9.291 hybrid contribution 0.362 -0.355 0.876 1.012 sum -1.973 -0.041 -8.111 8.348 Atomic orbital electron populations 1.22129 0.96298 1.01777 1.01330 1.20289 0.92574 0.96214 0.83057 0.89441 1.22845 1.03336 0.99675 0.91752 1.22932 0.92030 1.02236 1.04022 1.22902 0.98516 1.03181 0.97467 1.46025 1.50440 1.14059 1.24374 1.21254 0.99365 0.83947 0.98715 1.17539 0.91513 0.92411 0.90395 1.19668 1.08784 0.97846 1.01394 1.19697 1.03719 0.99233 0.95061 1.17882 0.97895 0.93735 0.92064 1.41797 1.54068 1.18054 1.29257 1.17018 0.92435 0.89113 0.92724 1.19160 1.02812 1.21575 1.05864 0.91154 1.25743 0.94475 0.95973 0.97835 1.69858 1.03263 1.33074 1.36899 0.86364 0.79982 0.80225 0.80610 1.18807 1.20362 1.20085 1.20697 1.06913 1.01910 0.92661 0.92351 0.92627 0.92815 0.88180 0.88810 0.89374 0.89382 0.89019 0.94799 0.93817 0.91832 0.89580 0.89834 0.78396 0.80145 0.91572 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.95 37.16 0.33 -1.92 16 2 C 0.18 3.02 2.77 -67.93 -0.19 2.83 16 3 H 0.09 1.52 5.14 -51.93 -0.27 1.25 16 4 C -0.16 -2.23 5.17 -90.61 -0.47 -2.70 16 5 C -0.18 -2.32 10.18 -26.73 -0.27 -2.59 16 6 C -0.18 -2.13 9.74 -26.73 -0.26 -2.39 16 7 N -0.63 -12.56 2.90 -172.01 -0.50 -13.05 16 8 C 0.11 2.03 8.86 59.84 0.53 2.56 16 9 C 0.18 4.21 6.53 -83.78 -0.55 3.66 16 10 C -0.25 -5.80 9.26 -39.14 -0.36 -6.17 16 11 C -0.15 -3.54 9.87 -39.46 -0.39 -3.93 16 12 C 0.09 2.08 6.79 -83.22 -0.56 1.52 16 13 N -0.89 -18.40 8.97 32.75 0.29 -18.11 16 14 C 0.09 2.47 5.57 -106.66 -0.59 1.88 16 15 C -0.46 -12.23 8.50 -37.91 -0.32 -12.55 16 16 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 17 C 0.07 1.90 5.21 -17.33 -0.09 1.81 16 18 N -0.80 -21.12 10.88 55.54 0.60 -20.52 16 19 Si 0.90 19.09 29.58 -169.99 -5.03 14.06 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.20 -5.17 7.76 -38.75 -0.30 -5.47 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 26 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 27 H 0.10 1.47 6.94 -51.93 -0.36 1.11 16 28 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.00 7.61 -51.93 -0.39 0.60 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.67 6.78 -51.93 -0.35 0.31 16 34 H 0.06 1.26 6.46 -51.93 -0.34 0.92 16 35 H 0.09 1.79 5.81 -52.49 -0.31 1.48 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.39 7.87 7.06 -40.82 -0.29 7.58 16 38 H 0.37 6.56 8.84 -40.82 -0.36 6.20 16 39 H 0.27 6.62 8.30 -40.82 -0.34 6.29 16 40 H 0.13 3.38 4.42 -52.49 -0.23 3.14 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -28.20 316.34 -9.04 -37.24 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -5.68 Total: 19.07 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -3.50 Total: -23.46 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.40 Total: -51.68 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.20 -9.04 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127234101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.539 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds