Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.53002 * 109.47156 * 240.00034 * 2 1 3 5 5 C 1.53004 * 117.49726 * 128.62018 * 4 2 1 6 6 C 1.52999 * 60.00209 * 252.51083 * 5 4 2 7 7 N 1.46499 * 109.47133 * 120.00138 * 2 1 3 8 8 C 1.46493 * 119.99984 * 54.81341 * 7 2 1 9 9 C 1.39853 * 120.00082 * 234.53495 * 7 2 1 10 10 C 1.39603 * 119.83837 * 353.97104 * 9 7 2 11 11 C 1.38058 * 120.54928 * 179.71493 * 10 9 7 12 12 C 1.38738 * 120.21841 * 0.55642 * 11 10 9 13 13 N 1.38868 * 120.16393 * 179.74337 * 12 11 10 14 14 C 1.41566 * 119.67520 * 359.72020 * 12 11 10 15 15 C 1.41023 * 120.26735 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00466 * 332.72550 * 15 14 12 17 17 C 1.39884 * 119.99623 * 152.72354 * 15 14 12 18 18 N 1.30901 * 120.00567 * 346.58119 * 17 15 14 19 19 Si 1.86802 * 119.99943 * 166.58053 * 17 15 14 20 20 H 1.48503 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46812 * 120.00044 * 19 17 15 22 22 H 1.48503 * 109.47266 * 240.00075 * 19 17 15 23 23 C 1.38001 * 119.84151 * 174.23886 * 9 7 2 24 24 H 1.09000 * 109.47301 * 300.00102 * 1 2 3 25 25 H 1.09000 * 109.46937 * 59.99805 * 1 2 3 26 26 H 1.08993 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08995 * 115.55110 * 274.32963 * 4 2 1 28 28 H 1.08999 * 117.49835 * 0.02562 * 5 4 2 29 29 H 1.09006 * 117.49715 * 145.01980 * 5 4 2 30 30 H 1.08999 * 117.50294 * 252.51529 * 6 5 4 31 31 H 1.08998 * 117.51538 * 107.47679 * 6 5 4 32 32 H 1.09006 * 109.47336 * 269.72491 * 8 7 2 33 33 H 1.09000 * 109.47387 * 29.72045 * 8 7 2 34 34 H 1.09001 * 109.47361 * 149.73009 * 8 7 2 35 35 H 1.08000 * 119.72734 * 0.02562 * 10 9 7 36 36 H 1.08001 * 119.89127 * 180.27854 * 11 10 9 37 37 H 0.97000 * 119.99831 * 185.21415 * 13 12 11 38 38 H 0.97000 * 119.99748 * 5.21331 * 13 12 11 39 39 H 0.96995 * 120.00817 * 185.03538 * 18 17 15 40 40 H 1.08000 * 120.11700 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1495 -2.6097 7 7 2.0183 -0.6906 1.1961 8 6 1.5732 -2.0557 1.4868 9 6 2.9139 -0.0489 2.0575 10 6 3.4382 1.1978 1.7113 11 6 4.3188 1.8471 2.5533 12 6 4.7018 1.2598 3.7505 13 7 5.5918 1.9115 4.5941 14 6 4.1804 -0.0068 4.1082 15 6 4.5616 -0.6154 5.3219 16 1 5.5212 -0.3879 5.7622 17 6 3.6967 -1.5138 5.9556 18 7 2.4458 -1.5948 5.5785 19 14 4.3268 -2.5982 7.3400 20 1 5.7659 -2.3160 7.5739 21 1 3.5594 -2.3146 8.5793 22 1 4.1559 -4.0256 6.9677 23 6 3.2795 -0.6536 3.2429 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.1267 -1.8044 -1.1643 28 1 3.3914 0.9968 -1.7889 29 1 3.8416 -0.6001 -2.5942 30 1 1.4568 -0.8565 -3.4197 31 1 1.0061 0.7403 -2.6146 32 1 0.6737 -2.0215 2.1015 33 1 1.3553 -2.5735 0.5527 34 1 2.3593 -2.5879 2.0225 35 1 3.1486 1.6605 0.7794 36 1 4.7144 2.8133 2.2770 37 1 5.9165 1.4673 5.3929 38 1 5.8887 2.8108 4.3845 39 1 1.8284 -2.1634 6.0647 40 1 2.8749 -1.6199 3.5056 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127234101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = 40.237311 kcal Electronic energy + Delta-G solvation = -19708.630873 eV Core-core repulsion = 16909.158206 eV Total energy + Delta-G solvation = -2799.472667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23844 -38.84398 -36.65004 -35.32576 -33.86608 -31.66094 -31.05562 -28.68485 -27.61730 -25.94345 -24.30395 -23.09435 -22.76593 -21.42707 -20.31797 -19.06775 -17.73698 -17.38057 -16.90456 -16.38634 -16.25707 -15.64440 -15.19096 -14.94243 -14.35168 -14.27826 -13.85152 -13.78096 -13.49017 -13.27810 -13.08985 -12.91831 -12.80737 -12.74496 -12.48621 -12.23626 -12.00135 -11.81790 -11.61287 -11.30376 -11.13111 -11.05474 -10.89383 -10.74622 -9.20495 -9.07750 -8.43058 -7.23013 -5.98886 1.13259 1.41291 1.52045 1.54456 1.65373 2.27892 2.58380 2.93734 3.06790 3.76442 3.79634 3.97013 4.08448 4.17773 4.28261 4.42290 4.53921 4.55245 4.68540 4.77043 4.79843 4.88436 4.90950 4.99724 5.05242 5.12637 5.26590 5.30427 5.32587 5.39141 5.41464 5.52051 5.64258 5.93652 6.10874 6.16547 6.34981 6.60322 6.91467 7.07169 7.12235 7.21402 7.49142 7.68254 8.54869 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.006069 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.237200 B = 4612.816189 C = 5412.936500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.181 3.819 3 H 0.077 0.923 4 C -0.173 4.173 5 C -0.185 4.185 6 C -0.153 4.153 7 N -0.636 5.636 8 C 0.116 3.884 9 C 0.171 3.829 10 C -0.255 4.255 11 C -0.158 4.158 12 C 0.069 3.931 13 N -0.879 5.879 14 C 0.056 3.944 15 C -0.490 4.490 16 H 0.073 0.927 17 C 0.032 3.968 18 N -0.836 5.836 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.273 1.273 23 C -0.222 4.222 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 0.894 -10.361 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.077 3.923 3 H 0.095 0.905 4 C -0.193 4.193 5 C -0.222 4.222 6 C -0.190 4.190 7 N -0.352 5.352 8 C -0.028 4.028 9 C 0.073 3.927 10 C -0.279 4.279 11 C -0.183 4.183 12 C -0.033 4.033 13 N -0.423 5.423 14 C 0.051 3.949 15 C -0.522 4.522 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.465 5.465 19 Si 0.798 3.202 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.247 4.247 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.588 0.613 -10.461 10.794 hybrid contribution 0.410 -0.376 1.205 1.327 sum -2.178 0.237 -9.256 9.512 Atomic orbital electron populations 1.22068 0.94617 1.02309 1.01821 1.20473 0.93819 0.95503 0.82553 0.90525 1.22672 1.05303 0.99221 0.92073 1.22994 0.93229 1.01804 1.04154 1.23000 0.96963 1.03370 0.95712 1.46228 1.49611 1.14471 1.24846 1.21218 0.98037 0.83567 0.99961 1.17688 0.91895 0.92826 0.90309 1.19986 1.08244 0.97518 1.02146 1.20045 1.03433 1.00220 0.94554 1.18059 0.98557 0.93552 0.93120 1.41667 1.53235 1.18675 1.28747 1.17419 0.93550 0.90518 0.93406 1.19404 1.03284 1.23035 1.06458 0.90934 1.26550 0.94398 0.96733 1.00324 1.69952 1.04367 1.33883 1.38259 0.85263 0.79469 0.78037 0.77457 1.18260 1.19681 1.19775 1.20695 1.08036 1.01846 0.94103 0.94197 0.89750 0.92261 0.88652 0.89496 0.88805 0.87396 0.87787 0.95530 0.90501 0.94180 0.87378 0.87194 0.78271 0.78254 0.91216 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 8.95 71.98 0.64 -3.36 16 2 C 0.18 5.66 2.77 44.99 0.12 5.78 16 3 H 0.08 2.55 5.14 -2.39 -0.01 2.54 16 4 C -0.17 -4.56 5.17 -10.79 -0.06 -4.62 16 5 C -0.18 -4.47 10.18 30.60 0.31 -4.16 16 6 C -0.15 -3.00 9.74 30.60 0.30 -2.70 16 7 N -0.64 -25.25 2.90 -698.10 -2.03 -27.28 16 8 C 0.12 4.28 8.86 127.77 1.13 5.41 16 9 C 0.17 8.24 6.53 38.13 0.25 8.49 16 10 C -0.26 -11.59 9.26 22.56 0.21 -11.38 16 11 C -0.16 -7.22 9.87 22.35 0.22 -7.00 16 12 C 0.07 3.40 6.79 38.97 0.26 3.67 16 13 N -0.88 -36.12 8.97 -50.30 -0.45 -36.57 16 14 C 0.06 3.10 5.57 -21.18 -0.12 2.98 16 15 C -0.49 -26.66 8.50 23.35 0.20 -26.46 16 16 H 0.07 3.75 6.67 -2.91 -0.02 3.73 16 17 C 0.03 1.66 5.21 85.23 0.44 2.10 16 18 N -0.84 -45.48 10.88 21.82 0.24 -45.25 16 19 Si 0.98 39.84 29.58 68.60 2.03 41.87 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 C -0.22 -12.09 7.76 22.81 0.18 -11.91 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.76 7.29 -2.39 -0.02 1.74 16 26 H 0.06 1.51 7.54 -2.39 -0.02 1.49 16 27 H 0.10 2.61 6.94 -2.39 -0.02 2.60 16 28 H 0.09 2.22 8.05 -2.39 -0.02 2.20 16 29 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 1.81 7.61 -2.39 -0.02 1.80 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.08 2.28 6.78 -2.39 -0.02 2.26 16 34 H 0.04 1.65 6.46 -2.39 -0.02 1.64 16 35 H 0.11 4.34 5.81 -2.91 -0.02 4.33 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 37 H 0.39 15.82 7.06 -92.71 -0.65 15.17 16 38 H 0.39 13.24 8.84 -92.71 -0.82 12.42 16 39 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.11 6.13 4.42 -2.91 -0.01 6.11 16 Total: -1.00 -62.18 316.34 3.48 -58.69 By element: Atomic # 1 Polarization: 52.08 SS G_CDS: -0.41 Total: 51.67 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 4.10 Total: -43.14 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -2.24 Total: -109.10 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -62.18 3.48 -58.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127234101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.930 kcal (2) G-P(sol) polarization free energy of solvation -62.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds