Wall clock time and date at job start Mon Mar 30 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00267 * 2 1 4 4 C 1.53001 * 109.47081 * 90.00272 * 3 2 1 5 5 C 1.53781 * 113.61413 * 185.00372 * 4 3 2 6 6 C 1.53783 * 87.17119 * 220.05850 * 5 4 3 7 7 C 1.53787 * 87.08068 * 25.38701 * 6 5 4 8 8 C 1.39857 * 119.99553 * 179.97438 * 2 1 3 9 9 C 1.39605 * 119.83779 * 179.72713 * 8 2 1 10 10 C 1.38058 * 120.54766 * 179.71541 * 9 8 2 11 11 C 1.38735 * 120.22194 * 0.56139 * 10 9 8 12 12 N 1.38860 * 120.16428 * 179.74456 * 11 10 9 13 13 C 1.41566 * 119.67173 * 359.71424 * 11 10 9 14 14 C 1.41032 * 120.26819 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99695 * 25.59757 * 14 13 11 16 16 C 1.39884 * 120.00056 * 205.59926 * 14 13 11 17 17 N 1.30901 * 120.00392 * 15.34839 * 16 14 13 18 18 Si 1.86801 * 119.99867 * 195.35075 * 16 14 13 19 19 H 1.48500 * 109.47109 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46841 * 119.99577 * 18 16 14 21 21 H 1.48494 * 109.47150 * 239.99703 * 18 16 14 22 22 C 1.38004 * 119.84297 * 0.02562 * 8 2 1 23 23 H 1.09004 * 109.46938 * 89.99982 * 1 2 3 24 24 H 1.08995 * 109.47265 * 209.99701 * 1 2 3 25 25 H 1.09002 * 109.46989 * 330.00330 * 1 2 3 26 26 H 1.08998 * 109.47026 * 329.99408 * 3 2 1 27 27 H 1.09005 * 109.47095 * 209.99944 * 3 2 1 28 28 H 1.09004 * 112.90316 * 316.24574 * 4 3 2 29 29 H 1.08990 * 113.62129 * 105.46406 * 5 4 3 30 30 H 1.09004 * 113.60950 * 334.64591 * 5 4 3 31 31 H 1.08996 * 113.61566 * 139.93763 * 6 5 4 32 32 H 1.09002 * 113.60852 * 270.83754 * 6 5 4 33 33 H 1.08995 * 113.61200 * 89.11997 * 7 6 5 34 34 H 1.09000 * 113.61217 * 219.93852 * 7 6 5 35 35 H 1.08003 * 119.72389 * 0.02562 * 9 8 2 36 36 H 1.07995 * 119.88878 * 180.28037 * 10 9 8 37 37 H 0.97006 * 119.99810 * 174.70994 * 12 11 10 38 38 H 0.96993 * 120.00176 * 354.70620 * 12 11 10 39 39 H 0.96998 * 119.99999 * 184.96171 * 17 16 14 40 40 H 1.08006 * 120.11268 * 359.97438 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.1106 3.0956 1.5554 6 6 3.9656 2.5126 2.6930 7 6 3.7471 1.1350 2.0452 8 6 2.1642 -1.2113 0.0005 9 6 3.5602 -1.2074 -0.0052 10 6 4.2652 -2.3944 0.0011 11 6 3.5911 -3.6070 0.0016 12 7 4.3014 -4.8002 0.0026 13 6 2.1755 -3.6218 0.0017 14 6 1.4775 -4.8473 0.0016 15 1 1.9432 -5.7340 0.4056 16 6 0.1820 -4.9142 -0.5218 17 7 -0.2714 -3.9431 -1.2733 18 14 -0.9012 -6.3895 -0.1480 19 1 -0.1595 -7.3417 0.7171 20 1 -2.1296 -5.9367 0.5530 21 1 -1.2755 -7.0631 -1.4174 22 6 1.4708 -2.4045 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6085 2.0283 -0.5139 27 1 3.1500 1.1383 -0.5138 28 1 1.5801 1.5878 2.0843 29 1 2.4263 3.8789 1.8809 30 1 3.6886 3.3774 0.6752 31 1 5.0035 2.8447 2.6734 32 1 3.5074 2.6099 3.6773 33 1 4.4989 0.8796 1.2985 34 1 3.5779 0.3353 2.7663 35 1 4.0931 -0.2680 -0.0097 36 1 5.3450 -2.3790 0.0012 37 1 3.8306 -5.6448 0.0804 38 1 5.2682 -4.7891 -0.0745 39 1 -1.1926 -3.9543 -1.5769 40 1 0.3907 -2.4035 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127369464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:45 Heat of formation + Delta-G solvation = 48.905282 kcal Electronic energy + Delta-G solvation = -19746.296485 eV Core-core repulsion = 16947.199690 eV Total energy + Delta-G solvation = -2799.096795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.02868 -37.64918 -35.44017 -33.44716 -32.01225 -29.62062 -28.51933 -26.97402 -25.60260 -24.98888 -23.93361 -21.95557 -20.84602 -19.22537 -19.01690 -17.14009 -15.96225 -15.57102 -15.29571 -14.78878 -14.65004 -14.62081 -14.13424 -13.20458 -12.98315 -12.54547 -12.36574 -12.21357 -12.09926 -11.70763 -11.57849 -11.36761 -11.19762 -11.00232 -10.99416 -10.83660 -10.36748 -10.34120 -10.05472 -9.91623 -9.74120 -9.46021 -9.17810 -8.99187 -7.51611 -7.18330 -6.57285 -5.44651 -4.02452 2.92318 3.15900 3.20108 3.34058 3.51256 4.06832 4.18466 4.83631 4.87221 4.98133 5.00671 5.15520 5.45554 5.73200 5.73420 5.86722 5.88372 5.92182 5.93879 6.01230 6.03255 6.20700 6.36338 6.41816 6.43163 6.54100 6.54744 6.65182 6.85382 7.15526 7.23010 7.37288 7.42701 7.77469 7.94252 7.96458 8.19078 8.50767 8.65372 8.89380 8.97170 9.05362 9.29418 9.37969 10.41321 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.005969 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.920853 B = 4689.593088 C = 5461.598348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.642 5.642 3 C 0.145 3.855 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.146 4.146 7 C -0.125 4.125 8 C 0.178 3.822 9 C -0.251 4.251 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.092 3.908 14 C -0.462 4.462 15 H 0.069 0.931 16 C 0.077 3.923 17 N -0.802 5.802 18 Si 0.898 3.102 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.202 4.202 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.373 0.627 39 H 0.273 0.727 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 8.544 3.681 9.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.358 5.358 3 C 0.021 3.979 4 C -0.145 4.145 5 C -0.175 4.175 6 C -0.184 4.184 7 C -0.163 4.163 8 C 0.081 3.919 9 C -0.275 4.275 10 C -0.178 4.178 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.087 3.913 14 C -0.493 4.493 15 H 0.087 0.913 16 C -0.138 4.138 17 N -0.429 5.429 18 Si 0.723 3.277 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.204 1.204 22 C -0.226 4.226 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.216 0.784 38 H 0.198 0.802 39 H 0.084 0.916 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.533 8.745 3.473 9.744 hybrid contribution -0.436 -0.931 0.103 1.033 sum 2.098 7.814 3.576 8.845 Atomic orbital electron populations 1.21306 0.81395 1.00816 0.99872 1.46040 1.03398 1.02631 1.83735 1.21115 0.96888 0.85749 0.94177 1.23077 0.97738 0.95075 0.98650 1.22900 0.99059 0.96672 0.98832 1.22851 0.99547 0.98105 0.97888 1.22974 0.97589 0.95747 0.99958 1.17523 0.90525 0.84713 0.99113 1.19761 0.91618 0.95898 1.20184 1.19713 0.96262 0.91519 1.10265 1.17875 0.91523 0.85413 1.06901 1.41798 1.06865 1.05988 1.88571 1.17012 0.88404 0.93353 0.92502 1.19152 0.99013 0.95510 1.35632 0.91251 1.25704 0.98466 0.97120 0.92532 1.69891 1.15879 1.32178 1.25000 0.86447 0.80240 0.82217 0.78811 1.18787 1.20059 1.20390 1.20696 0.99598 0.89239 1.13053 0.94885 0.91585 0.93928 0.92699 0.91274 0.89818 0.92180 0.90404 0.92060 0.90834 0.89793 0.91676 0.89090 0.89902 0.78430 0.80161 0.91569 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.00 10.18 59.85 0.61 2.61 16 2 N -0.64 -12.70 3.01 -179.62 -0.54 -13.24 16 3 C 0.15 2.35 5.17 -4.04 -0.02 2.33 16 4 C -0.13 -1.80 3.97 -89.72 -0.36 -2.16 16 5 C -0.14 -1.59 7.64 -25.92 -0.20 -1.79 16 6 C -0.15 -1.74 8.09 -25.91 -0.21 -1.95 16 7 C -0.13 -1.84 6.54 -25.83 -0.17 -2.01 16 8 C 0.18 4.17 6.55 -83.77 -0.55 3.62 16 9 C -0.25 -5.63 8.34 -39.14 -0.33 -5.95 16 10 C -0.15 -3.51 9.87 -39.46 -0.39 -3.90 16 11 C 0.08 2.04 6.79 -83.23 -0.56 1.48 16 12 N -0.89 -18.42 8.97 32.75 0.29 -18.13 16 13 C 0.09 2.47 5.58 -106.65 -0.60 1.88 16 14 C -0.46 -12.23 8.54 -37.91 -0.32 -12.55 16 15 H 0.07 1.76 6.62 -52.49 -0.35 1.41 16 16 C 0.08 1.96 5.18 -17.33 -0.09 1.87 16 17 N -0.80 -21.10 10.87 55.54 0.60 -20.50 16 18 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.20 -5.27 7.82 -38.75 -0.30 -5.57 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.31 6.18 -51.93 -0.32 0.99 16 25 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 26 H 0.05 0.79 8.07 -51.93 -0.42 0.38 16 27 H 0.07 1.15 5.96 -51.93 -0.31 0.85 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.28 6.06 -51.93 -0.31 0.97 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.83 3.92 -52.48 -0.21 1.62 16 36 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.39 7.89 7.03 -40.82 -0.29 7.60 16 38 H 0.37 6.56 8.84 -40.82 -0.36 6.20 16 39 H 0.27 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.12 3.34 4.19 -52.48 -0.22 3.12 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -28.17 312.27 -9.17 -37.34 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -5.72 Total: 17.88 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.49 Total: -22.11 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.36 Total: -51.87 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.17 -9.17 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127369464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.248 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds