Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00267 * 2 1 4 4 C 1.53001 * 109.47081 * 90.00272 * 3 2 1 5 5 C 1.53781 * 113.61413 * 185.00372 * 4 3 2 6 6 C 1.53783 * 87.17119 * 220.05850 * 5 4 3 7 7 C 1.53787 * 87.08068 * 25.38701 * 6 5 4 8 8 C 1.39857 * 119.99553 * 179.97438 * 2 1 3 9 9 C 1.39605 * 119.83779 * 179.72713 * 8 2 1 10 10 C 1.38058 * 120.54766 * 179.71541 * 9 8 2 11 11 C 1.38735 * 120.22194 * 0.56139 * 10 9 8 12 12 N 1.38860 * 120.16428 * 179.74456 * 11 10 9 13 13 C 1.41566 * 119.67173 * 359.71424 * 11 10 9 14 14 C 1.41032 * 120.26819 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99695 * 25.59757 * 14 13 11 16 16 C 1.39884 * 120.00056 * 205.59926 * 14 13 11 17 17 N 1.30901 * 120.00392 * 15.34839 * 16 14 13 18 18 Si 1.86801 * 119.99867 * 195.35075 * 16 14 13 19 19 H 1.48500 * 109.47109 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46841 * 119.99577 * 18 16 14 21 21 H 1.48494 * 109.47150 * 239.99703 * 18 16 14 22 22 C 1.38004 * 119.84297 * 0.02562 * 8 2 1 23 23 H 1.09004 * 109.46938 * 89.99982 * 1 2 3 24 24 H 1.08995 * 109.47265 * 209.99701 * 1 2 3 25 25 H 1.09002 * 109.46989 * 330.00330 * 1 2 3 26 26 H 1.08998 * 109.47026 * 329.99408 * 3 2 1 27 27 H 1.09005 * 109.47095 * 209.99944 * 3 2 1 28 28 H 1.09004 * 112.90316 * 316.24574 * 4 3 2 29 29 H 1.08990 * 113.62129 * 105.46406 * 5 4 3 30 30 H 1.09004 * 113.60950 * 334.64591 * 5 4 3 31 31 H 1.08996 * 113.61566 * 139.93763 * 6 5 4 32 32 H 1.09002 * 113.60852 * 270.83754 * 6 5 4 33 33 H 1.08995 * 113.61200 * 89.11997 * 7 6 5 34 34 H 1.09000 * 113.61217 * 219.93852 * 7 6 5 35 35 H 1.08003 * 119.72389 * 0.02562 * 9 8 2 36 36 H 1.07995 * 119.88878 * 180.28037 * 10 9 8 37 37 H 0.97006 * 119.99810 * 174.70994 * 12 11 10 38 38 H 0.96993 * 120.00176 * 354.70620 * 12 11 10 39 39 H 0.96998 * 119.99999 * 184.96171 * 17 16 14 40 40 H 1.08006 * 120.11268 * 359.97438 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.1106 3.0956 1.5554 6 6 3.9656 2.5126 2.6930 7 6 3.7471 1.1350 2.0452 8 6 2.1642 -1.2113 0.0005 9 6 3.5602 -1.2074 -0.0052 10 6 4.2652 -2.3944 0.0011 11 6 3.5911 -3.6070 0.0016 12 7 4.3014 -4.8002 0.0026 13 6 2.1755 -3.6218 0.0017 14 6 1.4775 -4.8473 0.0016 15 1 1.9432 -5.7340 0.4056 16 6 0.1820 -4.9142 -0.5218 17 7 -0.2714 -3.9431 -1.2733 18 14 -0.9012 -6.3895 -0.1480 19 1 -0.1595 -7.3417 0.7171 20 1 -2.1296 -5.9367 0.5530 21 1 -1.2755 -7.0631 -1.4174 22 6 1.4708 -2.4045 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6085 2.0283 -0.5139 27 1 3.1500 1.1383 -0.5138 28 1 1.5801 1.5878 2.0843 29 1 2.4263 3.8789 1.8809 30 1 3.6886 3.3774 0.6752 31 1 5.0035 2.8447 2.6734 32 1 3.5074 2.6099 3.6773 33 1 4.4989 0.8796 1.2985 34 1 3.5779 0.3353 2.7663 35 1 4.0931 -0.2680 -0.0097 36 1 5.3450 -2.3790 0.0012 37 1 3.8306 -5.6448 0.0804 38 1 5.2682 -4.7891 -0.0745 39 1 -1.1926 -3.9543 -1.5769 40 1 0.3907 -2.4035 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127369464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = 33.773171 kcal Electronic energy + Delta-G solvation = -19746.952663 eV Core-core repulsion = 16947.199690 eV Total energy + Delta-G solvation = -2799.752973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37913 -39.21030 -37.01251 -35.33404 -33.69766 -31.42684 -29.98077 -28.65482 -27.15896 -26.24558 -25.47555 -23.33881 -22.65105 -20.86344 -20.21442 -18.94426 -17.73347 -17.23251 -16.75246 -16.40016 -16.10663 -15.92967 -15.61757 -14.85342 -14.42260 -14.29523 -13.85006 -13.64888 -13.48961 -13.43677 -12.94954 -12.85641 -12.80143 -12.72028 -12.47793 -12.24036 -12.01400 -11.65396 -11.57443 -11.28682 -11.05461 -11.00885 -10.91512 -10.81840 -9.16963 -9.08281 -8.46516 -7.20085 -5.96685 1.14060 1.41033 1.52458 1.54702 1.67577 2.28673 2.70379 2.94718 3.77793 3.81832 3.90480 3.93078 4.03071 4.08979 4.43581 4.53173 4.59380 4.66846 4.71651 4.83222 4.88573 4.95605 5.00219 5.03886 5.12486 5.17036 5.24428 5.28162 5.43442 5.44957 5.52177 5.63712 5.70589 5.95652 6.11992 6.18244 6.35086 6.61255 6.92871 7.07962 7.13257 7.22481 7.50241 7.68860 8.53999 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.005969 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.920853 B = 4689.593088 C = 5461.598348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.646 5.646 3 C 0.142 3.858 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.135 4.135 8 C 0.171 3.829 9 C -0.247 4.247 10 C -0.160 4.160 11 C 0.067 3.933 12 N -0.880 5.880 13 C 0.055 3.945 14 C -0.491 4.491 15 H 0.070 0.930 16 C 0.034 3.966 17 N -0.835 5.835 18 Si 0.970 3.030 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.227 4.227 23 H 0.028 0.972 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 10.015 4.060 11.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.362 5.362 3 C 0.019 3.981 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.173 4.173 7 C -0.172 4.172 8 C 0.073 3.927 9 C -0.270 4.270 10 C -0.184 4.184 11 C -0.035 4.035 12 N -0.424 5.424 13 C 0.050 3.950 14 C -0.522 4.522 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.464 5.464 18 Si 0.792 3.208 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.199 1.199 22 C -0.251 4.251 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.216 0.784 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.163 10.240 3.856 11.390 hybrid contribution -0.551 -1.289 -0.018 1.402 sum 2.612 8.951 3.838 10.083 Atomic orbital electron populations 1.21303 0.80822 1.01278 0.99698 1.46252 1.04028 1.02785 1.83099 1.21343 0.96628 0.84478 0.95661 1.23027 0.97338 0.97309 0.97028 1.22843 0.98758 0.95209 0.99084 1.22810 1.00685 0.95656 0.98191 1.22983 0.97835 0.96687 0.99724 1.17661 0.91238 0.85463 0.98357 1.20074 0.91390 0.96911 1.18667 1.20071 0.97687 0.91190 1.09469 1.18064 0.91219 0.87053 1.07128 1.41673 1.07629 1.05022 1.88096 1.17409 0.89902 0.93866 0.93842 1.19388 1.00265 0.95717 1.36845 0.91144 1.26495 0.99412 0.99903 0.91953 1.69968 1.16394 1.34129 1.25879 0.85348 0.78198 0.78595 0.78618 1.18344 1.19549 1.19886 1.20727 0.99131 0.90499 1.14764 0.95350 0.94084 0.90398 0.90481 0.91721 0.90709 0.90477 0.89246 0.90603 0.90225 0.90450 0.94244 0.86697 0.87329 0.78352 0.78292 0.91170 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.11 10.18 127.77 1.30 5.41 16 2 N -0.65 -25.33 3.01 -722.21 -2.18 -27.50 16 3 C 0.14 4.31 5.17 86.38 0.45 4.76 16 4 C -0.13 -3.39 3.97 -10.21 -0.04 -3.43 16 5 C -0.12 -2.39 7.64 31.12 0.24 -2.15 16 6 C -0.14 -2.84 8.09 31.12 0.25 -2.59 16 7 C -0.13 -3.77 6.54 31.18 0.20 -3.56 16 8 C 0.17 8.13 6.55 38.14 0.25 8.38 16 9 C -0.25 -10.94 8.34 22.56 0.19 -10.75 16 10 C -0.16 -7.23 9.87 22.35 0.22 -7.01 16 11 C 0.07 3.31 6.79 38.97 0.26 3.57 16 12 N -0.88 -36.32 8.97 -50.31 -0.45 -36.77 16 13 C 0.05 3.03 5.58 -21.18 -0.12 2.91 16 14 C -0.49 -26.80 8.54 23.35 0.20 -26.60 16 15 H 0.07 3.67 6.62 -2.91 -0.02 3.65 16 16 C 0.03 1.79 5.18 85.23 0.44 2.23 16 17 N -0.84 -45.45 10.87 21.82 0.24 -45.21 16 18 Si 0.97 39.95 29.59 68.60 2.03 41.98 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 C -0.23 -12.28 7.82 22.81 0.18 -12.11 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.04 1.69 6.18 -2.39 -0.01 1.67 16 25 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 26 H 0.08 2.01 8.07 -2.39 -0.02 1.99 16 27 H 0.06 2.02 5.96 -2.38 -0.01 2.01 16 28 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.60 8.10 -2.38 -0.02 1.58 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.24 6.06 -2.39 -0.01 2.23 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.12 4.45 3.92 -2.91 -0.01 4.44 16 36 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.39 15.92 7.03 -92.70 -0.65 15.27 16 38 H 0.39 13.30 8.84 -92.71 -0.82 12.48 16 39 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.11 6.11 4.19 -2.91 -0.01 6.09 16 Total: -1.00 -62.18 312.27 3.26 -58.92 By element: Atomic # 1 Polarization: 49.94 SS G_CDS: -0.40 Total: 49.54 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 4.02 Total: -40.95 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -2.39 Total: -109.48 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -62.18 3.26 -58.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127369464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.691 kcal (2) G-P(sol) polarization free energy of solvation -62.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds