Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.43525 * 2 1 4 4 C 1.55240 * 110.57861 * 237.41781 * 2 1 3 5 5 C 1.54892 * 102.58606 * 203.33957 * 4 2 1 6 6 C 1.54260 * 104.31340 * 37.93371 * 5 4 2 7 7 C 1.53876 * 106.59816 * 336.32260 * 6 5 4 8 8 H 1.08996 * 110.03243 * 119.29026 * 7 6 5 9 9 N 1.46505 * 110.03103 * 240.66625 * 7 6 5 10 10 C 1.39848 * 120.00039 * 273.54735 * 9 7 6 11 11 C 1.39597 * 119.83976 * 0.02562 * 10 9 7 12 12 C 1.38058 * 120.55017 * 180.02562 * 11 10 9 13 13 C 1.38741 * 120.21901 * 359.97438 * 12 11 10 14 14 N 1.38875 * 120.16203 * 179.97438 * 13 12 11 15 15 C 1.41562 * 119.67371 * 359.97438 * 13 12 11 16 16 C 1.41022 * 120.26420 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00329 * 25.47630 * 16 15 13 18 18 C 1.39888 * 119.99757 * 205.47688 * 16 15 13 19 19 N 1.30906 * 120.00189 * 15.18484 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 195.18647 * 18 16 15 21 21 H 1.48499 * 109.47039 * 90.00058 * 20 18 16 22 22 H 1.48498 * 109.47381 * 209.99913 * 20 18 16 23 23 H 1.48501 * 109.47086 * 330.00098 * 20 18 16 24 24 C 1.38005 * 119.83739 * 179.72812 * 10 9 7 25 25 H 1.09000 * 109.47352 * 297.45752 * 1 2 3 26 26 H 1.09003 * 109.47544 * 57.45737 * 1 2 3 27 27 H 1.09000 * 109.47296 * 177.45735 * 1 2 3 28 28 H 1.09008 * 110.89598 * 85.04974 * 4 2 1 29 29 H 1.08995 * 110.77067 * 321.56992 * 4 2 1 30 30 H 1.09006 * 110.48235 * 279.18708 * 5 4 2 31 31 H 1.08997 * 110.48562 * 156.68134 * 5 4 2 32 32 H 1.08995 * 110.03252 * 95.61038 * 6 5 4 33 33 H 1.09005 * 110.03231 * 216.99102 * 6 5 4 34 34 H 0.96998 * 119.99690 * 93.55055 * 9 7 6 35 35 H 1.07997 * 119.72769 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.89219 * 179.97438 * 12 11 10 37 37 H 0.96991 * 120.00019 * 359.97438 * 14 13 12 38 38 H 0.96994 * 119.99758 * 179.97438 * 14 13 12 39 39 H 0.96992 * 120.00092 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.11551 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0756 -0.7826 -1.2246 5 6 3.4937 -1.1947 -0.7573 6 6 3.3184 -1.5370 0.7366 7 6 2.0698 -0.7774 1.2181 8 1 1.3184 -1.4820 1.5744 9 7 2.4313 0.1543 2.2893 10 6 2.4670 -0.2856 3.6163 11 6 2.1580 -1.6135 3.9164 12 6 2.1880 -2.0634 5.2213 13 6 2.5273 -1.1974 6.2508 14 7 2.5566 -1.6510 7.5630 15 6 2.8433 0.1509 5.9570 16 6 3.1904 1.0416 6.9937 17 1 3.6134 0.6627 7.9123 18 6 2.9867 2.4161 6.8323 19 7 2.2158 2.8550 5.8696 20 14 3.8146 3.6255 7.9904 21 1 5.1397 4.0092 7.4408 22 1 2.9671 4.8368 8.1300 23 1 3.9954 2.9919 9.3212 24 6 2.8134 0.5935 4.6221 25 1 -0.3634 0.4738 0.9119 26 1 -0.3634 0.5528 -0.8663 27 1 -0.3634 -1.0266 -0.0456 28 1 2.1300 -0.1404 -2.1037 29 1 1.4641 -1.6624 -1.4249 30 1 4.1914 -0.3662 -0.8796 31 1 3.8390 -2.0679 -1.3108 32 1 3.1729 -2.6103 0.8592 33 1 4.1938 -1.2126 1.2993 34 1 2.6459 1.0764 2.0781 35 1 1.8924 -2.2944 3.1213 36 1 1.9466 -3.0927 5.4414 37 1 2.3392 -2.5752 7.7616 38 1 2.7944 -1.0437 8.2809 39 1 2.0742 3.8080 5.7578 40 1 3.0569 1.6187 4.3856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127387785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 4.565645 kcal Electronic energy + Delta-G solvation = -19462.540063 eV Core-core repulsion = 16661.520556 eV Total energy + Delta-G solvation = -2801.019506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.82563 -37.43131 -34.34581 -33.41611 -31.30934 -31.06105 -29.37318 -27.71294 -25.74090 -24.82516 -24.08677 -21.28106 -20.46903 -19.64708 -19.25707 -17.05444 -16.13967 -15.66144 -15.28164 -14.91937 -14.76711 -14.46073 -13.64234 -13.47381 -13.02837 -12.60331 -12.46255 -12.16285 -12.01587 -11.76863 -11.46991 -11.32522 -11.22251 -10.98937 -10.93915 -10.74248 -10.53316 -10.44374 -10.36648 -10.17231 -9.79295 -9.63794 -9.26241 -9.03238 -7.69535 -7.18229 -6.57539 -5.48022 -4.03339 2.93654 3.15134 3.17562 3.34537 3.52588 4.05564 4.47266 4.73875 4.81278 4.89644 5.05103 5.42749 5.46091 5.60627 5.67876 5.69891 5.74719 5.82650 5.94730 6.02763 6.05519 6.10710 6.22490 6.35013 6.42458 6.48733 6.49595 6.62448 6.73266 7.16688 7.21735 7.36792 7.53642 7.76539 7.93572 8.05689 8.17807 8.50424 8.81532 8.95604 8.99623 9.04729 9.29867 9.38513 10.40894 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.005485 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.981817 B = 5103.490657 C = 5811.341826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.141 4.141 7 C 0.165 3.835 8 H 0.074 0.926 9 N -0.755 5.755 10 C 0.179 3.821 11 C -0.254 4.254 12 C -0.153 4.153 13 C 0.083 3.917 14 N -0.889 5.889 15 C 0.094 3.906 16 C -0.464 4.464 17 H 0.070 0.930 18 C 0.076 3.924 19 N -0.801 5.801 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.266 1.266 24 C -0.201 4.201 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.386 0.614 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.373 0.627 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -4.002 -9.390 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.181 4.181 7 C 0.057 3.943 8 H 0.091 0.909 9 N -0.388 5.388 10 C 0.080 3.920 11 C -0.278 4.278 12 C -0.177 4.177 13 C -0.018 4.018 14 N -0.432 5.432 15 C 0.089 3.911 16 C -0.495 4.495 17 H 0.088 0.912 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.190 1.190 24 C -0.226 4.226 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.219 0.781 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.454 -3.896 -9.616 10.385 hybrid contribution 0.376 0.814 0.785 1.191 sum -0.078 -3.082 -8.831 9.354 Atomic orbital electron populations 1.21764 0.94902 1.01557 1.01675 1.22279 0.95719 0.99553 0.94634 0.90671 1.22585 0.96414 0.99581 0.97048 1.22328 0.96754 1.00571 0.96442 1.22750 1.00070 1.00107 0.95127 1.21281 0.94762 0.91465 0.86748 0.90853 1.44499 1.79947 1.11235 1.03150 1.17520 0.98377 0.92907 0.83180 1.19627 1.18848 0.94265 0.95071 1.19705 1.09060 0.96641 0.92331 1.17863 1.05497 0.94291 0.84118 1.41805 1.83315 1.12302 1.05790 1.16974 0.92364 0.89184 0.92582 1.19137 1.37997 0.90824 1.01526 0.91175 1.25742 0.93349 0.99243 0.95636 1.69880 1.28208 1.15560 1.29185 0.86423 0.79887 0.79762 0.81149 1.19667 1.20655 1.18995 1.20531 1.12200 0.99191 0.90642 0.92162 0.93134 0.92826 0.91938 0.91537 0.92015 0.92286 0.92252 0.91018 0.78096 0.89713 0.89909 0.80165 0.78385 0.91536 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.13 37.15 0.34 -1.43 16 2 C -0.10 -1.35 3.15 -88.78 -0.28 -1.63 16 3 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 4 C -0.12 -1.32 6.36 -24.55 -0.16 -1.47 16 5 C -0.12 -1.46 6.82 -25.07 -0.17 -1.63 16 6 C -0.14 -2.07 6.59 -25.62 -0.17 -2.24 16 7 C 0.16 2.62 2.46 -66.81 -0.16 2.46 16 8 H 0.07 1.26 6.19 -51.93 -0.32 0.94 16 9 N -0.75 -14.57 5.17 -51.09 -0.26 -14.83 16 10 C 0.18 4.18 6.64 -83.78 -0.56 3.62 16 11 C -0.25 -5.84 9.21 -39.14 -0.36 -6.20 16 12 C -0.15 -3.56 9.86 -39.46 -0.39 -3.95 16 13 C 0.08 2.04 6.79 -83.22 -0.56 1.48 16 14 N -0.89 -18.52 8.98 32.75 0.29 -18.23 16 15 C 0.09 2.53 5.58 -106.66 -0.60 1.93 16 16 C -0.46 -12.31 8.50 -37.91 -0.32 -12.63 16 17 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 18 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 19 N -0.80 -21.14 10.88 55.55 0.60 -20.53 16 20 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.20 -5.27 8.50 -38.75 -0.33 -5.60 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 34 H 0.39 7.23 8.35 -40.82 -0.34 6.89 16 35 H 0.08 1.78 6.22 -52.49 -0.33 1.45 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 38 H 0.39 7.94 7.04 -40.82 -0.29 7.65 16 39 H 0.27 6.66 8.30 -40.82 -0.34 6.33 16 40 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -27.93 317.21 -9.48 -37.41 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -6.06 Total: 22.71 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -3.81 Total: -25.44 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.63 Total: -53.60 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.93 -9.48 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127387785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.980 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds