Wall clock time and date at job start Mon Mar 30 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 110.43525 * 2 1 4 4 C 1.55240 * 110.57861 * 237.41781 * 2 1 3 5 5 C 1.54892 * 102.58606 * 203.33957 * 4 2 1 6 6 C 1.54260 * 104.31340 * 37.93371 * 5 4 2 7 7 C 1.53876 * 106.59816 * 336.32260 * 6 5 4 8 8 H 1.08996 * 110.03243 * 119.29026 * 7 6 5 9 9 N 1.46505 * 110.03103 * 240.66625 * 7 6 5 10 10 C 1.39848 * 120.00039 * 273.54735 * 9 7 6 11 11 C 1.39597 * 119.83976 * 0.02562 * 10 9 7 12 12 C 1.38058 * 120.55017 * 180.02562 * 11 10 9 13 13 C 1.38741 * 120.21901 * 359.97438 * 12 11 10 14 14 N 1.38875 * 120.16203 * 179.97438 * 13 12 11 15 15 C 1.41562 * 119.67371 * 359.97438 * 13 12 11 16 16 C 1.41022 * 120.26420 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00329 * 25.47630 * 16 15 13 18 18 C 1.39888 * 119.99757 * 205.47688 * 16 15 13 19 19 N 1.30906 * 120.00189 * 15.18484 * 18 16 15 20 20 Si 1.86800 * 120.00129 * 195.18647 * 18 16 15 21 21 H 1.48499 * 109.47039 * 90.00058 * 20 18 16 22 22 H 1.48498 * 109.47381 * 209.99913 * 20 18 16 23 23 H 1.48501 * 109.47086 * 330.00098 * 20 18 16 24 24 C 1.38005 * 119.83739 * 179.72812 * 10 9 7 25 25 H 1.09000 * 109.47352 * 297.45752 * 1 2 3 26 26 H 1.09003 * 109.47544 * 57.45737 * 1 2 3 27 27 H 1.09000 * 109.47296 * 177.45735 * 1 2 3 28 28 H 1.09008 * 110.89598 * 85.04974 * 4 2 1 29 29 H 1.08995 * 110.77067 * 321.56992 * 4 2 1 30 30 H 1.09006 * 110.48235 * 279.18708 * 5 4 2 31 31 H 1.08997 * 110.48562 * 156.68134 * 5 4 2 32 32 H 1.08995 * 110.03252 * 95.61038 * 6 5 4 33 33 H 1.09005 * 110.03231 * 216.99102 * 6 5 4 34 34 H 0.96998 * 119.99690 * 93.55055 * 9 7 6 35 35 H 1.07997 * 119.72769 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.89219 * 179.97438 * 12 11 10 37 37 H 0.96991 * 120.00019 * 359.97438 * 14 13 12 38 38 H 0.96994 * 119.99758 * 179.97438 * 14 13 12 39 39 H 0.96992 * 120.00092 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.11551 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0756 -0.7826 -1.2246 5 6 3.4937 -1.1947 -0.7573 6 6 3.3184 -1.5370 0.7366 7 6 2.0698 -0.7774 1.2181 8 1 1.3184 -1.4820 1.5744 9 7 2.4313 0.1543 2.2893 10 6 2.4670 -0.2856 3.6163 11 6 2.1580 -1.6135 3.9164 12 6 2.1880 -2.0634 5.2213 13 6 2.5273 -1.1974 6.2508 14 7 2.5566 -1.6510 7.5630 15 6 2.8433 0.1509 5.9570 16 6 3.1904 1.0416 6.9937 17 1 3.6134 0.6627 7.9123 18 6 2.9867 2.4161 6.8323 19 7 2.2158 2.8550 5.8696 20 14 3.8146 3.6255 7.9904 21 1 5.1397 4.0092 7.4408 22 1 2.9671 4.8368 8.1300 23 1 3.9954 2.9919 9.3212 24 6 2.8134 0.5935 4.6221 25 1 -0.3634 0.4738 0.9119 26 1 -0.3634 0.5528 -0.8663 27 1 -0.3634 -1.0266 -0.0456 28 1 2.1300 -0.1404 -2.1037 29 1 1.4641 -1.6624 -1.4249 30 1 4.1914 -0.3662 -0.8796 31 1 3.8390 -2.0679 -1.3108 32 1 3.1729 -2.6103 0.8592 33 1 4.1938 -1.2126 1.2993 34 1 2.6459 1.0764 2.0781 35 1 1.8924 -2.2944 3.1213 36 1 1.9466 -3.0927 5.4414 37 1 2.3392 -2.5752 7.7616 38 1 2.7944 -1.0437 8.2809 39 1 2.0742 3.8080 5.7578 40 1 3.0569 1.6187 4.3856 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127387785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:52 Heat of formation + Delta-G solvation = -11.237644 kcal Electronic energy + Delta-G solvation = -19463.225345 eV Core-core repulsion = 16661.520556 eV Total energy + Delta-G solvation = -2801.704788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22207 -39.05304 -35.96894 -35.30458 -32.90527 -32.12647 -31.28538 -29.17681 -27.20720 -26.65286 -25.32639 -23.10142 -21.79643 -21.06817 -20.64489 -18.88482 -17.79348 -17.32010 -16.84982 -16.51858 -16.37072 -15.78891 -14.87389 -14.69098 -14.50334 -14.22755 -13.93048 -13.81989 -13.66082 -13.14772 -13.07245 -12.93967 -12.72160 -12.69991 -12.20744 -12.06984 -11.85017 -11.71038 -11.54252 -11.43277 -11.37456 -11.20915 -11.09068 -10.93453 -9.35687 -9.12634 -8.48335 -7.26731 -5.99574 1.13288 1.40890 1.52143 1.52584 1.67556 2.27371 2.92126 3.01205 3.66782 3.77803 3.79635 3.99495 4.01269 4.38216 4.54115 4.56017 4.63037 4.65353 4.72249 4.81415 4.89560 5.01086 5.03572 5.10323 5.24176 5.24878 5.30815 5.32960 5.38385 5.42678 5.50339 5.55522 5.69714 5.92576 6.08941 6.19984 6.32289 6.59053 6.98782 7.09094 7.16877 7.30769 7.49561 7.67937 8.52001 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.005485 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.981817 B = 5103.490657 C = 5811.341826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.139 4.139 7 C 0.159 3.841 8 H 0.062 0.938 9 N -0.751 5.751 10 C 0.177 3.823 11 C -0.257 4.257 12 C -0.158 4.158 13 C 0.067 3.933 14 N -0.879 5.879 15 C 0.060 3.940 16 C -0.492 4.492 17 H 0.073 0.927 18 C 0.032 3.968 19 N -0.834 5.834 20 Si 0.975 3.025 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.258 1.258 24 C -0.227 4.227 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.386 0.614 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.390 0.610 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 -4.690 -10.564 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.089 0.911 4 C -0.146 4.146 5 C -0.155 4.155 6 C -0.179 4.179 7 C 0.053 3.947 8 H 0.080 0.920 9 N -0.384 5.384 10 C 0.077 3.923 11 C -0.281 4.281 12 C -0.182 4.182 13 C -0.035 4.035 14 N -0.423 5.423 15 C 0.055 3.945 16 C -0.523 4.523 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.462 5.462 20 Si 0.798 3.202 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.252 4.252 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.219 0.781 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.218 0.782 38 H 0.217 0.783 39 H 0.089 0.911 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.493 -4.616 -10.809 11.764 hybrid contribution 0.351 0.947 1.078 1.477 sum -0.142 -3.670 -9.731 10.401 Atomic orbital electron populations 1.21741 0.94331 1.02156 1.01373 1.22268 0.96152 0.99242 0.94270 0.91120 1.22564 0.95570 1.00017 0.96435 1.22303 0.97506 1.01436 0.94249 1.22675 0.98119 1.00018 0.97038 1.21527 0.95229 0.91220 0.86756 0.92036 1.44606 1.79309 1.11868 1.02602 1.17617 0.97367 0.92905 0.84424 1.19908 1.18159 0.94291 0.95753 1.20050 1.08270 0.97762 0.92167 1.18032 1.05712 0.93909 0.85837 1.41670 1.82902 1.13228 1.04538 1.17372 0.93433 0.90652 0.93091 1.19397 1.39167 0.91857 1.01887 0.90862 1.26572 0.93472 1.00687 0.97282 1.69969 1.29256 1.16117 1.30834 0.85306 0.78567 0.77265 0.79082 1.19448 1.19986 1.18180 1.20498 1.14235 0.98823 0.91639 0.94627 0.91037 0.92016 0.89909 0.90293 0.92021 0.90348 0.91799 0.93543 0.78118 0.87735 0.87280 0.78248 0.78260 0.91146 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.13 71.98 0.66 -2.57 16 2 C -0.10 -2.46 3.15 -9.60 -0.03 -2.49 16 3 H 0.07 1.81 7.73 -2.39 -0.02 1.80 16 4 C -0.11 -2.05 6.36 32.01 0.20 -1.84 16 5 C -0.12 -2.48 6.82 31.67 0.22 -2.26 16 6 C -0.14 -3.92 6.59 31.32 0.21 -3.72 16 7 C 0.16 4.94 2.46 45.71 0.11 5.05 16 8 H 0.06 2.07 6.19 -2.39 -0.01 2.05 16 9 N -0.75 -29.55 5.17 -315.56 -1.63 -31.18 16 10 C 0.18 8.49 6.64 38.13 0.25 8.75 16 11 C -0.26 -11.75 9.21 22.56 0.21 -11.54 16 12 C -0.16 -7.27 9.86 22.35 0.22 -7.05 16 13 C 0.07 3.32 6.79 38.97 0.26 3.58 16 14 N -0.88 -36.29 8.98 -50.30 -0.45 -36.74 16 15 C 0.06 3.30 5.58 -21.18 -0.12 3.18 16 16 C -0.49 -26.80 8.50 23.35 0.20 -26.60 16 17 H 0.07 3.78 6.67 -2.91 -0.02 3.77 16 18 C 0.03 1.68 5.18 85.23 0.44 2.12 16 19 N -0.83 -45.42 10.88 21.82 0.24 -45.18 16 20 Si 0.98 39.84 29.59 68.60 2.03 41.87 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.23 -12.39 8.50 22.81 0.19 -12.20 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 30 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.54 7.92 -2.38 -0.02 1.52 16 34 H 0.39 14.96 8.35 -92.71 -0.77 14.18 16 35 H 0.10 4.28 6.22 -2.91 -0.02 4.26 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.39 13.29 8.83 -92.71 -0.82 12.47 16 38 H 0.39 15.91 7.04 -92.71 -0.65 15.26 16 39 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 Total: -1.00 -61.53 317.21 2.03 -59.50 By element: Atomic # 1 Polarization: 60.51 SS G_CDS: -1.18 Total: 59.33 kcal Atomic # 6 Polarization: -50.62 SS G_CDS: 3.03 Total: -47.60 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -1.85 Total: -113.10 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -61.53 2.03 -59.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127387785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.263 kcal (2) G-P(sol) polarization free energy of solvation -61.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds