Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.54474 * 2 1 4 4 C 1.54887 * 110.48516 * 122.61711 * 2 1 3 5 5 C 1.54896 * 102.74936 * 156.61497 * 4 2 1 6 6 C 1.54260 * 104.19384 * 322.05851 * 5 4 2 7 7 C 1.53874 * 106.60328 * 23.60890 * 6 5 4 8 8 H 1.09001 * 110.03026 * 119.28295 * 7 6 5 9 9 N 1.46497 * 110.03437 * 240.71511 * 7 6 5 10 10 C 1.39850 * 119.99851 * 270.46072 * 9 7 6 11 11 C 1.39598 * 119.84051 * 0.02562 * 10 9 7 12 12 C 1.38056 * 120.55048 * 179.97438 * 11 10 9 13 13 C 1.38743 * 120.22207 * 0.02562 * 12 11 10 14 14 N 1.38856 * 120.16593 * 179.97438 * 13 12 11 15 15 C 1.41568 * 119.66813 * 0.02562 * 13 12 11 16 16 C 1.41025 * 120.26020 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00462 * 26.94304 * 16 15 13 18 18 C 1.39890 * 119.99575 * 206.93800 * 16 15 13 19 19 N 1.30902 * 120.00097 * 13.57154 * 18 16 15 20 20 Si 1.86804 * 120.00168 * 193.56465 * 18 16 15 21 21 H 1.48500 * 109.46795 * 60.00305 * 20 18 16 22 22 H 1.48492 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46897 * 300.00581 * 20 18 16 24 24 C 1.38008 * 119.83659 * 179.71774 * 10 9 7 25 25 H 1.09001 * 109.46901 * 304.82878 * 1 2 3 26 26 H 1.09003 * 109.47181 * 64.82195 * 1 2 3 27 27 H 1.08995 * 109.47445 * 184.83036 * 1 2 3 28 28 H 1.09007 * 110.75844 * 38.30413 * 4 2 1 29 29 H 1.08994 * 110.75836 * 274.92929 * 4 2 1 30 30 H 1.09002 * 110.48634 * 203.37913 * 5 4 2 31 31 H 1.08998 * 110.59654 * 80.79409 * 5 4 2 32 32 H 1.09001 * 110.03174 * 142.89350 * 6 5 4 33 33 H 1.08999 * 110.03324 * 264.31811 * 6 5 4 34 34 H 0.96998 * 120.00292 * 90.45783 * 9 7 6 35 35 H 1.08001 * 119.73001 * 359.96866 * 11 10 9 36 36 H 1.08003 * 119.89252 * 180.02562 * 12 11 10 37 37 H 0.97000 * 120.00465 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00535 * 180.02562 * 14 13 12 39 39 H 0.97002 * 120.00481 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.11596 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0720 -0.7821 1.2221 5 6 3.4906 -1.1982 0.7598 6 6 3.3164 -1.5406 -0.7341 7 6 2.0698 -0.7789 -1.2173 8 1 2.3412 -0.0858 -2.0137 9 7 1.0586 -1.7241 -1.6970 10 6 1.0520 -2.1202 -3.0382 11 6 2.0110 -1.6132 -3.9169 12 6 2.0184 -1.9947 -5.2437 13 6 1.0694 -2.8884 -5.7187 14 7 1.0776 -3.2708 -7.0536 15 6 0.0919 -3.4075 -4.8360 16 6 -0.8782 -4.3171 -5.3054 17 1 -0.6607 -4.9484 -6.1543 18 6 -2.1223 -4.4017 -4.6714 19 7 -2.4908 -3.4724 -3.8263 20 14 -3.2579 -5.8407 -5.0308 21 1 -2.5805 -7.1098 -4.6624 22 1 -4.5054 -5.6967 -4.2383 23 1 -3.5906 -5.8591 -6.4780 24 6 0.1015 -3.0154 -3.4851 25 1 -0.3633 0.5869 0.8436 26 1 -0.3634 0.4372 -0.9300 27 1 -0.3634 -1.0239 0.0865 28 1 1.4579 -1.6602 1.4222 29 1 2.1252 -0.1384 2.1000 30 1 3.8315 -2.0725 1.3144 31 1 4.1915 -0.3725 0.8828 32 1 4.1927 -1.2172 -1.2960 33 1 3.1691 -2.6136 -0.8565 34 1 0.3936 -2.0753 -1.0843 35 1 2.7532 -0.9167 -3.5559 36 1 2.7655 -1.5961 -5.9142 37 1 1.7482 -2.9134 -7.6564 38 1 0.4128 -3.8955 -7.3833 39 1 -3.3536 -3.5308 -3.3869 40 1 -0.6360 -3.4090 -2.8014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127388030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = 10.364611 kcal Electronic energy + Delta-G solvation = -19613.393008 eV Core-core repulsion = 16812.624964 eV Total energy + Delta-G solvation = -2800.768044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.95964 -37.41861 -34.23379 -33.39765 -31.44226 -30.83735 -29.36491 -27.73609 -25.56270 -24.70329 -24.54282 -21.18550 -20.38004 -19.96884 -18.73923 -17.11496 -16.27385 -15.59276 -15.39239 -14.85429 -14.67701 -14.30470 -14.02552 -13.54946 -12.85481 -12.59603 -12.40661 -12.01322 -11.96606 -11.89414 -11.45136 -11.26859 -11.05295 -10.98234 -10.90329 -10.66881 -10.48745 -10.42093 -10.37831 -10.14869 -9.79530 -9.66804 -9.24695 -9.02724 -7.69111 -7.16233 -6.55647 -5.46762 -4.03492 2.95589 3.14299 3.17356 3.34788 3.52843 4.06327 4.51965 4.74331 4.81931 4.91076 5.06049 5.45249 5.46732 5.63420 5.71125 5.76800 5.81377 5.86344 5.95294 5.98779 6.13204 6.16092 6.24853 6.42550 6.43970 6.44441 6.58207 6.63912 6.73711 7.17239 7.21892 7.37040 7.54561 7.77231 7.93583 8.05777 8.18629 8.50847 8.82128 8.96509 9.00540 9.05184 9.30053 9.38839 10.42839 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.005925 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.834907 B = 4724.318282 C = 5621.496601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.140 4.140 7 C 0.162 3.838 8 H 0.073 0.927 9 N -0.752 5.752 10 C 0.178 3.822 11 C -0.254 4.254 12 C -0.154 4.154 13 C 0.084 3.916 14 N -0.889 5.889 15 C 0.095 3.905 16 C -0.465 4.465 17 H 0.069 0.931 18 C 0.076 3.924 19 N -0.804 5.804 20 Si 0.902 3.098 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.199 4.199 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.387 0.613 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.373 0.627 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 4.032 6.759 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.161 4.161 6 C -0.180 4.180 7 C 0.055 3.945 8 H 0.091 0.909 9 N -0.388 5.388 10 C 0.080 3.920 11 C -0.278 4.278 12 C -0.178 4.178 13 C -0.017 4.017 14 N -0.432 5.432 15 C 0.089 3.911 16 C -0.496 4.496 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.431 5.431 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.223 4.223 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.223 0.777 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.618 4.227 6.974 9.903 hybrid contribution -0.785 -0.788 -0.312 1.156 sum 4.832 3.439 6.662 8.920 Atomic orbital electron populations 1.21663 0.94599 1.01758 1.01443 1.22243 0.96212 0.98917 0.94976 0.90688 1.22573 0.96370 0.99646 0.97114 1.22325 0.96764 1.00426 0.96574 1.22773 0.98601 1.01780 0.94841 1.21196 0.87993 0.90641 0.94695 0.90874 1.44564 1.35034 1.51193 1.07959 1.17533 0.95561 0.95944 0.82983 1.19640 1.04093 1.10345 0.93702 1.19709 1.00107 1.02782 0.95187 1.17874 0.99410 0.99750 0.84675 1.41804 1.37988 1.55487 1.07913 1.16967 0.91054 0.92839 0.90203 1.19089 0.97489 1.19212 1.13811 0.91277 1.25729 0.98418 0.95737 0.94066 1.69862 1.20269 1.29860 1.23079 0.86483 0.79176 0.82451 0.79121 1.19240 1.20658 1.19418 1.20513 1.01454 1.04571 0.95787 0.93507 0.92050 0.92424 0.91529 0.92158 0.92243 0.92168 0.92260 0.91002 0.77745 0.89682 0.89929 0.80173 0.78384 0.91516 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.42 37.16 0.31 -1.56 16 2 C -0.10 -1.37 3.42 -88.96 -0.30 -1.67 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.40 6.33 -24.74 -0.16 -1.56 16 5 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 6 C -0.14 -2.04 6.59 -25.62 -0.17 -2.21 16 7 C 0.16 2.57 2.86 -66.81 -0.19 2.38 16 8 H 0.07 1.24 6.32 -51.93 -0.33 0.92 16 9 N -0.75 -14.34 4.48 -51.09 -0.23 -14.56 16 10 C 0.18 4.15 6.64 -83.78 -0.56 3.59 16 11 C -0.25 -5.80 9.21 -39.14 -0.36 -6.16 16 12 C -0.15 -3.57 9.86 -39.46 -0.39 -3.95 16 13 C 0.08 2.06 6.79 -83.22 -0.56 1.49 16 14 N -0.89 -18.50 8.98 32.75 0.29 -18.20 16 15 C 0.09 2.53 5.57 -106.65 -0.59 1.94 16 16 C -0.46 -12.32 8.47 -37.91 -0.32 -12.64 16 17 H 0.07 1.74 6.72 -52.49 -0.35 1.39 16 18 C 0.08 1.93 5.21 -17.33 -0.09 1.84 16 19 N -0.80 -21.16 10.89 55.55 0.61 -20.55 16 20 Si 0.90 19.16 29.58 -169.99 -5.03 14.13 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.20 -5.18 8.49 -38.75 -0.33 -5.51 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 28 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 34 H 0.39 7.22 6.58 -40.82 -0.27 6.95 16 35 H 0.09 1.77 6.15 -52.49 -0.32 1.45 16 36 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 38 H 0.39 7.93 7.07 -40.82 -0.29 7.64 16 39 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.12 3.18 6.21 -52.49 -0.33 2.86 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -27.73 313.42 -9.44 -37.16 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -5.92 Total: 22.94 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -3.88 Total: -25.64 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.67 Total: -53.32 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.73 -9.44 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127388030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.528 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds