Wall clock time and date at job start Mon Mar 30 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.54474 * 2 1 4 4 C 1.54887 * 110.48516 * 122.61711 * 2 1 3 5 5 C 1.54896 * 102.74936 * 156.61497 * 4 2 1 6 6 C 1.54260 * 104.19384 * 322.05851 * 5 4 2 7 7 C 1.53874 * 106.60328 * 23.60890 * 6 5 4 8 8 H 1.09001 * 110.03026 * 119.28295 * 7 6 5 9 9 N 1.46497 * 110.03437 * 240.71511 * 7 6 5 10 10 C 1.39850 * 119.99851 * 270.46072 * 9 7 6 11 11 C 1.39598 * 119.84051 * 0.02562 * 10 9 7 12 12 C 1.38056 * 120.55048 * 179.97438 * 11 10 9 13 13 C 1.38743 * 120.22207 * 0.02562 * 12 11 10 14 14 N 1.38856 * 120.16593 * 179.97438 * 13 12 11 15 15 C 1.41568 * 119.66813 * 0.02562 * 13 12 11 16 16 C 1.41025 * 120.26020 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00462 * 26.94304 * 16 15 13 18 18 C 1.39890 * 119.99575 * 206.93800 * 16 15 13 19 19 N 1.30902 * 120.00097 * 13.57154 * 18 16 15 20 20 Si 1.86804 * 120.00168 * 193.56465 * 18 16 15 21 21 H 1.48500 * 109.46795 * 60.00305 * 20 18 16 22 22 H 1.48492 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46897 * 300.00581 * 20 18 16 24 24 C 1.38008 * 119.83659 * 179.71774 * 10 9 7 25 25 H 1.09001 * 109.46901 * 304.82878 * 1 2 3 26 26 H 1.09003 * 109.47181 * 64.82195 * 1 2 3 27 27 H 1.08995 * 109.47445 * 184.83036 * 1 2 3 28 28 H 1.09007 * 110.75844 * 38.30413 * 4 2 1 29 29 H 1.08994 * 110.75836 * 274.92929 * 4 2 1 30 30 H 1.09002 * 110.48634 * 203.37913 * 5 4 2 31 31 H 1.08998 * 110.59654 * 80.79409 * 5 4 2 32 32 H 1.09001 * 110.03174 * 142.89350 * 6 5 4 33 33 H 1.08999 * 110.03324 * 264.31811 * 6 5 4 34 34 H 0.96998 * 120.00292 * 90.45783 * 9 7 6 35 35 H 1.08001 * 119.73001 * 359.96866 * 11 10 9 36 36 H 1.08003 * 119.89252 * 180.02562 * 12 11 10 37 37 H 0.97000 * 120.00465 * 0.02562 * 14 13 12 38 38 H 0.97003 * 120.00535 * 180.02562 * 14 13 12 39 39 H 0.97002 * 120.00481 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.11596 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0720 -0.7821 1.2221 5 6 3.4906 -1.1982 0.7598 6 6 3.3164 -1.5406 -0.7341 7 6 2.0698 -0.7789 -1.2173 8 1 2.3412 -0.0858 -2.0137 9 7 1.0586 -1.7241 -1.6970 10 6 1.0520 -2.1202 -3.0382 11 6 2.0110 -1.6132 -3.9169 12 6 2.0184 -1.9947 -5.2437 13 6 1.0694 -2.8884 -5.7187 14 7 1.0776 -3.2708 -7.0536 15 6 0.0919 -3.4075 -4.8360 16 6 -0.8782 -4.3171 -5.3054 17 1 -0.6607 -4.9484 -6.1543 18 6 -2.1223 -4.4017 -4.6714 19 7 -2.4908 -3.4724 -3.8263 20 14 -3.2579 -5.8407 -5.0308 21 1 -2.5805 -7.1098 -4.6624 22 1 -4.5054 -5.6967 -4.2383 23 1 -3.5906 -5.8591 -6.4780 24 6 0.1015 -3.0154 -3.4851 25 1 -0.3633 0.5869 0.8436 26 1 -0.3634 0.4372 -0.9300 27 1 -0.3634 -1.0239 0.0865 28 1 1.4579 -1.6602 1.4222 29 1 2.1252 -0.1384 2.1000 30 1 3.8315 -2.0725 1.3144 31 1 4.1915 -0.3725 0.8828 32 1 4.1927 -1.2172 -1.2960 33 1 3.1691 -2.6136 -0.8565 34 1 0.3936 -2.0753 -1.0843 35 1 2.7532 -0.9167 -3.5559 36 1 2.7655 -1.5961 -5.9142 37 1 1.7482 -2.9134 -7.6564 38 1 0.4128 -3.8955 -7.3833 39 1 -3.3536 -3.5308 -3.3869 40 1 -0.6360 -3.4090 -2.8014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127388030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:55 Heat of formation + Delta-G solvation = -4.937973 kcal Electronic energy + Delta-G solvation = -19614.056578 eV Core-core repulsion = 16812.624964 eV Total energy + Delta-G solvation = -2801.431614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.33160 -39.07220 -35.85782 -35.27839 -32.89640 -32.08637 -31.26416 -29.18476 -27.13602 -26.51367 -25.73337 -23.03158 -21.72111 -21.36874 -20.14013 -18.85080 -17.95576 -17.26246 -17.00903 -16.43549 -16.19636 -15.73122 -15.26711 -14.68279 -14.48940 -14.22044 -13.99889 -13.69808 -13.57118 -13.21596 -13.01268 -12.92920 -12.69649 -12.67317 -12.11299 -11.94111 -11.82835 -11.74738 -11.55519 -11.42433 -11.35031 -11.25522 -11.03627 -10.91795 -9.34585 -9.09946 -8.46211 -7.24388 -5.99381 1.15179 1.40935 1.50366 1.53977 1.68362 2.28069 2.94008 3.03826 3.65869 3.78522 3.80099 4.00286 4.01848 4.41644 4.51215 4.58979 4.65338 4.66895 4.72501 4.84459 4.91536 4.94892 5.03427 5.13770 5.24383 5.25533 5.30434 5.37621 5.38225 5.41652 5.51933 5.57707 5.71575 5.93660 6.09749 6.20793 6.33645 6.59967 7.00153 7.10282 7.18445 7.32885 7.50643 7.68452 8.53916 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.005925 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.834907 B = 4724.318282 C = 5621.496601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.138 4.138 7 C 0.154 3.846 8 H 0.062 0.938 9 N -0.747 5.747 10 C 0.177 3.823 11 C -0.257 4.257 12 C -0.159 4.159 13 C 0.067 3.933 14 N -0.879 5.879 15 C 0.060 3.940 16 C -0.493 4.493 17 H 0.072 0.928 18 C 0.032 3.968 19 N -0.836 5.836 20 Si 0.975 3.025 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.224 4.224 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.387 0.613 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.390 0.610 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 4.676 7.587 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 H 0.112 0.888 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.178 4.178 7 C 0.048 3.952 8 H 0.080 0.920 9 N -0.381 5.381 10 C 0.077 3.923 11 C -0.281 4.281 12 C -0.183 4.183 13 C -0.035 4.035 14 N -0.423 5.423 15 C 0.054 3.946 16 C -0.524 4.524 17 H 0.090 0.910 18 C -0.180 4.180 19 N -0.464 5.464 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.186 1.186 24 C -0.249 4.249 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.222 0.778 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.548 4.893 7.805 11.302 hybrid contribution -0.982 -0.903 -0.544 1.441 sum 5.566 3.989 7.261 9.981 Atomic orbital electron populations 1.21623 0.95237 1.01134 1.01205 1.22241 0.95584 0.99678 0.94210 0.88753 1.22555 0.95899 0.99516 0.97207 1.22303 0.97300 1.01529 0.94168 1.22693 0.97901 0.99900 0.97262 1.21455 0.87949 0.90194 0.95618 0.91964 1.44641 1.35681 1.51325 1.06473 1.17628 0.94789 0.95048 0.84853 1.19933 1.04154 1.10296 0.93700 1.20055 1.00211 1.02202 0.95828 1.18043 0.99374 1.00167 0.85887 1.41670 1.38438 1.55301 1.06933 1.17365 0.92281 0.93859 0.91053 1.19353 0.98337 1.20042 1.14702 0.90958 1.26553 0.99702 0.98075 0.93678 1.69958 1.20869 1.31491 1.24034 0.85371 0.77032 0.78664 0.79225 1.19080 1.19993 1.18562 1.20474 1.02319 1.06349 0.95758 0.91129 0.94378 0.93721 0.92434 0.89632 0.91480 0.90131 0.91733 0.93487 0.77775 0.87601 0.87322 0.78266 0.78268 0.91203 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 8.42 71.98 0.61 -2.94 16 2 C -0.10 -2.37 3.42 -9.72 -0.03 -2.40 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.11 -2.35 6.33 31.89 0.20 -2.15 16 5 C -0.12 -2.39 6.83 31.67 0.22 -2.17 16 6 C -0.14 -3.82 6.59 31.32 0.21 -3.61 16 7 C 0.15 4.73 2.86 45.72 0.13 4.86 16 8 H 0.06 2.05 6.32 -2.39 -0.02 2.03 16 9 N -0.75 -28.94 4.48 -315.55 -1.41 -30.35 16 10 C 0.18 8.43 6.64 38.14 0.25 8.69 16 11 C -0.26 -11.66 9.21 22.56 0.21 -11.45 16 12 C -0.16 -7.27 9.86 22.35 0.22 -7.05 16 13 C 0.07 3.32 6.79 38.97 0.26 3.59 16 14 N -0.88 -36.28 8.98 -50.31 -0.45 -36.74 16 15 C 0.06 3.29 5.57 -21.18 -0.12 3.17 16 16 C -0.49 -26.86 8.47 23.35 0.20 -26.67 16 17 H 0.07 3.73 6.72 -2.91 -0.02 3.71 16 18 C 0.03 1.67 5.21 85.23 0.44 2.11 16 19 N -0.84 -45.49 10.89 21.82 0.24 -45.25 16 20 Si 0.97 39.90 29.58 68.60 2.03 41.93 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 C -0.22 -12.18 8.49 22.81 0.19 -11.99 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 1.27 6.32 -2.39 -0.02 1.26 16 28 H 0.06 1.30 8.01 -2.38 -0.02 1.28 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.53 7.92 -2.39 -0.02 1.51 16 34 H 0.39 14.91 6.58 -92.71 -0.61 14.30 16 35 H 0.11 4.28 6.15 -2.91 -0.02 4.27 16 36 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.39 13.29 8.83 -92.71 -0.82 12.47 16 38 H 0.39 15.91 7.07 -92.71 -0.66 15.26 16 39 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.10 5.52 6.21 -2.91 -0.02 5.50 16 Total: -1.00 -61.17 313.42 2.38 -58.79 By element: Atomic # 1 Polarization: 60.63 SS G_CDS: -1.02 Total: 59.62 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 2.99 Total: -48.00 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -1.63 Total: -112.34 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -61.17 2.38 -58.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127388030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.850 kcal (2) G-P(sol) polarization free energy of solvation -61.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds