Wall clock time and date at job start Mon Mar 30 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 115.55413 * 2 1 4 4 C 1.52998 * 117.51961 * 145.70685 * 2 1 3 5 5 C 1.52998 * 60.00219 * 107.48436 * 4 2 1 6 6 H 1.09008 * 117.51228 * 252.52326 * 5 4 2 7 7 C 1.52995 * 117.50319 * 107.49222 * 5 4 2 8 8 N 1.46499 * 109.47099 * 116.37766 * 7 5 4 9 9 C 1.46504 * 119.99958 * 270.00053 * 8 7 5 10 10 C 1.39851 * 120.00229 * 89.99911 * 8 7 5 11 11 C 1.39593 * 119.83766 * 0.02562 * 10 8 7 12 12 C 1.38061 * 120.55083 * 179.97438 * 11 10 8 13 13 C 1.38735 * 120.21853 * 0.02562 * 12 11 10 14 14 N 1.38862 * 120.16419 * 179.97438 * 13 12 11 15 15 C 1.41563 * 119.67267 * 0.02562 * 13 12 11 16 16 C 1.41027 * 120.26501 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99858 * 330.00991 * 16 15 13 18 18 C 1.39892 * 120.00040 * 150.02088 * 16 15 13 19 19 N 1.30901 * 119.99738 * 162.25120 * 18 16 15 20 20 Si 1.86797 * 119.99938 * 342.25027 * 18 16 15 21 21 H 1.48495 * 109.47093 * 91.55329 * 20 18 16 22 22 H 1.48499 * 109.47255 * 211.56023 * 20 18 16 23 23 H 1.48505 * 109.46909 * 331.55690 * 20 18 16 24 24 C 1.38004 * 119.83943 * 179.72622 * 10 8 7 25 25 H 1.08997 * 109.47167 * 205.66696 * 1 2 3 26 26 H 1.09004 * 109.47609 * 325.66564 * 1 2 3 27 27 H 1.09006 * 109.47329 * 85.66699 * 1 2 3 28 28 H 1.09002 * 117.50077 * 359.97438 * 4 2 1 29 29 H 1.09005 * 117.49640 * 214.97073 * 4 2 1 30 30 H 1.09000 * 109.46849 * 356.37744 * 7 5 4 31 31 H 1.08994 * 109.47014 * 236.37563 * 7 5 4 32 32 H 1.09001 * 109.47368 * 90.00016 * 9 8 7 33 33 H 1.08996 * 109.47488 * 210.00165 * 9 8 7 34 34 H 1.08999 * 109.47314 * 330.00112 * 9 8 7 35 35 H 1.08004 * 119.73051 * 359.97438 * 11 10 8 36 36 H 1.07997 * 119.89260 * 180.02562 * 12 11 10 37 37 H 0.97004 * 119.99903 * 353.95201 * 14 13 12 38 38 H 0.97005 * 120.00060 * 173.95381 * 14 13 12 39 39 H 0.97001 * 119.99826 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.11638 * 359.97438 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1210 0.7645 5 6 2.2364 -1.1206 -0.7655 6 1 1.6111 -1.8580 -1.2691 7 6 3.5486 -0.7752 -1.4723 8 7 4.0081 -1.9335 -2.2425 9 6 4.8892 -2.9246 -1.6196 10 6 3.6057 -2.0934 -3.5723 11 6 2.7666 -1.1468 -4.1625 12 6 2.3607 -1.2898 -5.4744 13 6 2.7838 -2.3796 -6.2214 14 7 2.3745 -2.5226 -7.5406 15 6 3.6341 -3.3458 -5.6318 16 6 4.0721 -4.4582 -6.3798 17 1 3.4496 -4.8593 -7.1659 18 6 5.3129 -5.0422 -6.1034 19 7 5.5772 -6.2508 -6.5311 20 14 6.5925 -4.0972 -5.1241 21 1 6.4403 -4.4090 -3.6802 22 1 7.9514 -4.4913 -5.5751 23 1 6.4031 -2.6400 -5.3385 24 6 4.0452 -3.1829 -4.2964 25 1 -0.3633 -0.9262 0.4451 26 1 -0.3634 0.8486 0.5796 27 1 -0.3634 0.0776 -1.0248 28 1 1.6119 -1.8586 1.2681 29 1 3.1721 -0.8750 1.2676 30 1 4.3020 -0.5100 -0.7304 31 1 3.3882 0.0676 -2.1445 32 1 4.2868 -3.7038 -1.1526 33 1 5.5315 -3.3686 -2.3800 34 1 5.5048 -2.4387 -0.8627 35 1 2.4320 -0.2955 -3.5883 36 1 1.7117 -0.5508 -5.9206 37 1 1.7230 -1.9094 -7.9154 38 1 2.7400 -3.2356 -8.0873 39 1 6.4377 -6.6556 -6.3398 40 1 4.6986 -3.9104 -3.8380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127402858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:13 Heat of formation + Delta-G solvation = 51.459521 kcal Electronic energy + Delta-G solvation = -19536.213630 eV Core-core repulsion = 16737.227595 eV Total energy + Delta-G solvation = -2798.986035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.77172 -37.67622 -35.58823 -33.39783 -32.20978 -30.42820 -29.26898 -27.29664 -27.19208 -24.64971 -23.48000 -21.24066 -21.14507 -20.22594 -19.11317 -17.27064 -16.54669 -15.80191 -15.29431 -14.98023 -14.76739 -14.47201 -13.70053 -13.54768 -13.37128 -13.01332 -12.85730 -12.40282 -12.20710 -11.95896 -11.89709 -11.58756 -11.36189 -11.29205 -11.14174 -11.10914 -10.64252 -10.50737 -10.12478 -9.76462 -9.70510 -9.57279 -9.39355 -8.96610 -7.75524 -7.48356 -6.79226 -5.75639 -4.18043 2.77984 3.02360 3.18290 3.37192 3.43760 3.74179 4.02801 4.11047 4.67671 4.80384 4.93398 5.05552 5.30631 5.30756 5.48030 5.60084 5.69209 5.72874 5.78494 5.80701 5.86993 5.91803 6.01732 6.09752 6.17577 6.26397 6.30330 6.44399 6.49957 6.78487 6.87601 7.09183 7.32365 7.45703 7.55898 7.73730 7.99814 8.31588 8.35516 8.61120 8.62752 8.91748 9.09973 9.16474 10.24134 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.006360 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.876483 B = 4401.569912 C = 5276.534597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.156 4.156 3 H 0.100 0.900 4 C -0.180 4.180 5 C -0.157 4.157 6 H 0.108 0.892 7 C 0.165 3.835 8 N -0.640 5.640 9 C 0.098 3.902 10 C 0.198 3.802 11 C -0.253 4.253 12 C -0.142 4.142 13 C 0.097 3.903 14 N -0.886 5.886 15 C 0.080 3.920 16 C -0.451 4.451 17 H 0.086 0.914 18 C 0.084 3.916 19 N -0.822 5.822 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.299 1.299 23 H -0.248 1.248 24 C -0.276 4.276 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.376 0.624 38 H 0.393 0.607 39 H 0.281 0.719 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 9.146 9.833 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.175 4.175 3 H 0.118 0.882 4 C -0.217 4.217 5 C -0.177 4.177 6 H 0.126 0.874 7 C 0.040 3.960 8 N -0.356 5.356 9 C -0.046 4.046 10 C 0.101 3.899 11 C -0.277 4.277 12 C -0.167 4.167 13 C -0.005 4.005 14 N -0.428 5.428 15 C 0.074 3.926 16 C -0.481 4.481 17 H 0.104 0.896 18 C -0.132 4.132 19 N -0.448 5.448 20 Si 0.743 3.257 21 H -0.197 1.197 22 H -0.227 1.227 23 H -0.171 1.171 24 C -0.300 4.300 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.201 0.799 38 H 0.221 0.779 39 H 0.091 0.909 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.366 8.894 9.960 13.771 hybrid contribution 0.485 0.118 0.209 0.541 sum -2.881 9.012 10.169 13.890 Atomic orbital electron populations 1.21333 0.93116 1.01434 1.01896 1.22321 0.95113 0.94489 1.05551 0.88181 1.23155 1.02170 1.01408 0.94936 1.23168 1.00065 1.01303 0.93124 0.87423 1.20745 0.92237 0.89087 0.93941 1.46103 1.54160 1.25339 1.09958 1.21551 0.93389 0.91982 0.97631 1.17362 0.95301 0.94819 0.82432 1.19682 1.10031 1.01861 0.96120 1.19799 1.04574 0.97740 0.94588 1.17757 1.02272 0.95165 0.85311 1.41857 1.51419 1.38350 1.11198 1.17165 0.92846 0.91487 0.91078 1.19097 1.02530 1.09447 1.16996 0.89570 1.26048 0.99662 0.93822 0.93679 1.69737 1.23732 1.12493 1.38864 0.86359 0.77637 0.82519 0.79198 1.19677 1.22712 1.17143 1.20388 1.13012 1.01555 0.95071 0.92793 0.92589 0.92080 0.89354 0.89303 0.92225 0.90602 0.94612 0.91465 0.93175 0.88796 0.89172 0.79851 0.77880 0.90905 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.19 37.15 0.38 -0.88 16 2 C -0.16 -1.78 6.13 -90.62 -0.56 -2.34 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 4 C -0.18 -2.08 9.82 -26.73 -0.26 -2.35 16 5 C -0.16 -2.18 5.73 -90.62 -0.52 -2.70 16 6 H 0.11 1.77 8.14 -51.92 -0.42 1.35 16 7 C 0.16 2.49 5.48 -4.04 -0.02 2.47 16 8 N -0.64 -12.07 3.01 -179.63 -0.54 -12.61 16 9 C 0.10 1.71 10.23 59.85 0.61 2.33 16 10 C 0.20 4.42 6.55 -83.78 -0.55 3.87 16 11 C -0.25 -5.41 9.20 -39.14 -0.36 -5.77 16 12 C -0.14 -3.08 9.87 -39.46 -0.39 -3.47 16 13 C 0.10 2.26 6.79 -83.23 -0.56 1.69 16 14 N -0.89 -17.72 8.97 32.75 0.29 -17.43 16 15 C 0.08 2.06 5.13 -106.66 -0.55 1.51 16 16 C -0.45 -12.22 8.88 -37.91 -0.34 -12.56 16 17 H 0.09 2.41 7.10 -52.49 -0.37 2.03 16 18 C 0.08 2.26 5.41 -17.33 -0.09 2.16 16 19 N -0.82 -22.39 13.93 55.55 0.77 -21.62 16 20 Si 0.91 21.61 24.23 -169.99 -4.12 17.49 16 21 H -0.27 -6.06 5.14 56.52 0.29 -5.77 16 22 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.25 -6.13 6.99 56.52 0.40 -5.73 16 24 C -0.28 -6.83 6.39 -38.75 -0.25 -7.08 16 25 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 29 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 30 H 0.06 0.79 7.63 -51.93 -0.40 0.40 16 31 H 0.08 1.17 6.18 -51.93 -0.32 0.85 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.31 4.42 -51.93 -0.23 1.08 16 34 H 0.05 0.72 7.89 -51.93 -0.41 0.31 16 35 H 0.09 1.80 6.11 -52.48 -0.32 1.48 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.38 6.27 8.84 -40.82 -0.36 5.90 16 38 H 0.39 7.94 7.19 -40.82 -0.29 7.64 16 39 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 40 H 0.11 2.61 2.97 -52.49 -0.16 2.45 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -28.46 314.54 -8.20 -36.67 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -5.89 Total: 15.87 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -3.46 Total: -23.12 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.53 Total: -51.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.12 Total: 17.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.46 -8.20 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127402858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.127 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds