Wall clock time and date at job start Mon Mar 30 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.54664 * 2 1 4 4 C 1.52994 * 117.49910 * 214.33447 * 2 1 3 5 5 C 1.52992 * 117.49985 * 145.67455 * 2 1 3 6 6 H 1.09006 * 117.49958 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.50067 * 214.98416 * 5 2 1 8 8 N 1.46501 * 109.47475 * 175.00151 * 7 5 2 9 9 C 1.46508 * 119.99545 * 269.99893 * 8 7 5 10 10 C 1.39851 * 120.00362 * 89.99377 * 8 7 5 11 11 C 1.39602 * 119.83408 * 0.02562 * 10 8 7 12 12 C 1.38067 * 120.54369 * 179.97438 * 11 10 8 13 13 C 1.38736 * 120.22142 * 0.02562 * 12 11 10 14 14 N 1.38859 * 120.16494 * 179.97438 * 13 12 11 15 15 C 1.41561 * 119.67163 * 359.97438 * 13 12 11 16 16 C 1.41034 * 120.26550 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99889 * 330.02437 * 16 15 13 18 18 C 1.39888 * 119.99820 * 150.02117 * 16 15 13 19 19 N 1.30893 * 119.99895 * 162.25857 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 342.26077 * 18 16 15 21 21 H 1.48489 * 109.47344 * 91.55520 * 20 18 16 22 22 H 1.48504 * 109.46599 * 211.55541 * 20 18 16 23 23 H 1.48504 * 109.47017 * 331.55004 * 20 18 16 24 24 C 1.38000 * 119.83688 * 179.72926 * 10 8 7 25 25 H 1.09004 * 109.47300 * 154.41101 * 1 2 3 26 26 H 1.09004 * 109.47320 * 34.41386 * 1 2 3 27 27 H 1.09002 * 109.47462 * 274.41629 * 1 2 3 28 28 H 1.09004 * 117.49912 * 0.02562 * 4 2 1 29 29 H 1.08997 * 117.50131 * 144.99773 * 4 2 1 30 30 H 1.09007 * 109.46692 * 294.99687 * 7 5 2 31 31 H 1.08994 * 109.47224 * 54.99074 * 7 5 2 32 32 H 1.08996 * 109.46921 * 89.99915 * 9 8 7 33 33 H 1.08996 * 109.46312 * 210.00010 * 9 8 7 34 34 H 1.08996 * 109.46511 * 329.99688 * 9 8 7 35 35 H 1.07992 * 119.73452 * 359.97438 * 11 10 8 36 36 H 1.07995 * 119.88673 * 180.02562 * 12 11 10 37 37 H 0.97006 * 120.00014 * 353.94516 * 14 13 12 38 38 H 0.97001 * 120.00468 * 173.94696 * 14 13 12 39 39 H 0.97005 * 120.00527 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.11972 * 359.97438 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1206 -0.7654 5 6 2.2364 -1.1207 0.7652 6 1 1.6112 -1.8584 1.2684 7 6 3.5489 -0.7755 1.4717 8 7 4.0085 -1.9339 2.2418 9 6 3.5873 -2.1012 3.6350 10 6 4.8492 -2.8802 1.6470 11 6 5.2488 -2.7171 0.3194 12 6 6.0788 -3.6420 -0.2822 13 6 6.5251 -4.7465 0.4290 14 7 7.3595 -5.6762 -0.1773 15 6 6.1257 -4.9209 1.7758 16 6 6.5723 -6.0388 2.5106 17 1 6.7845 -6.9685 2.0036 18 6 6.7406 -5.9433 3.8960 19 7 6.8119 -7.0294 4.6231 20 14 6.8635 -4.2657 4.7085 21 1 5.5107 -3.8171 5.1250 22 1 7.7438 -4.3567 5.9010 23 1 7.4340 -3.2899 3.7454 24 6 5.2846 -3.9671 2.3773 25 1 -0.3634 -0.9269 -0.4439 26 1 -0.3634 0.8478 -0.5808 27 1 -0.3634 0.0791 1.0246 28 1 1.6112 -1.8577 -1.2694 29 1 3.1713 -0.8745 -1.2689 30 1 4.3022 -0.5105 0.7296 31 1 3.3890 0.0675 2.1439 32 1 2.6618 -2.6759 3.6682 33 1 4.3635 -2.6299 4.1881 34 1 3.4234 -1.1221 4.0849 35 1 4.9059 -1.8606 -0.2419 36 1 6.3817 -3.5052 -1.3097 37 1 7.5611 -5.6028 -1.1234 38 1 7.7408 -6.3991 0.3450 39 1 6.9289 -6.9633 5.5837 40 1 4.9776 -4.0872 3.4057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127403038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:17 Heat of formation + Delta-G solvation = 51.679738 kcal Electronic energy + Delta-G solvation = -19575.257171 eV Core-core repulsion = 16776.280685 eV Total energy + Delta-G solvation = -2798.976486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.79004 -37.62569 -35.57856 -33.39300 -32.22081 -30.43223 -29.28736 -27.27186 -27.11759 -24.74801 -23.47710 -21.33353 -20.95811 -20.22117 -19.12041 -17.30822 -16.51095 -15.77192 -15.36068 -15.00119 -14.56110 -14.47443 -13.79821 -13.54055 -13.38817 -13.04116 -12.83243 -12.46096 -12.17707 -12.00088 -11.84254 -11.61660 -11.35497 -11.28365 -11.14070 -11.04767 -10.63444 -10.50042 -10.02982 -9.80871 -9.65097 -9.53239 -9.44777 -8.96425 -7.74912 -7.47603 -6.78659 -5.75109 -4.17438 2.78782 3.02873 3.18435 3.37671 3.43955 3.74880 4.06465 4.11453 4.68620 4.82089 4.95922 5.08307 5.29180 5.31060 5.57824 5.60596 5.64435 5.70931 5.73263 5.80704 5.93456 5.95004 6.00125 6.10275 6.16914 6.28242 6.30106 6.41229 6.52693 6.78881 6.87569 7.09473 7.32958 7.46137 7.56405 7.74083 8.00366 8.32199 8.36072 8.61651 8.63311 8.92284 9.10515 9.16906 10.24765 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.006326 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.304020 B = 4425.166578 C = 5256.972646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.162 4.162 3 H 0.099 0.901 4 C -0.167 4.167 5 C -0.157 4.157 6 H 0.101 0.899 7 C 0.164 3.836 8 N -0.641 5.641 9 C 0.097 3.903 10 C 0.199 3.801 11 C -0.251 4.251 12 C -0.143 4.143 13 C 0.096 3.904 14 N -0.886 5.886 15 C 0.080 3.920 16 C -0.451 4.451 17 H 0.086 0.914 18 C 0.085 3.915 19 N -0.823 5.823 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.299 1.299 23 H -0.248 1.248 24 C -0.276 4.276 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.376 0.624 38 H 0.392 0.608 39 H 0.281 0.719 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 11.192 -4.998 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.181 4.181 3 H 0.118 0.882 4 C -0.204 4.204 5 C -0.177 4.177 6 H 0.120 0.880 7 C 0.040 3.960 8 N -0.356 5.356 9 C -0.047 4.047 10 C 0.102 3.898 11 C -0.274 4.274 12 C -0.167 4.167 13 C -0.005 4.005 14 N -0.428 5.428 15 C 0.074 3.926 16 C -0.481 4.481 17 H 0.104 0.896 18 C -0.132 4.132 19 N -0.449 5.449 20 Si 0.743 3.257 21 H -0.197 1.197 22 H -0.227 1.227 23 H -0.172 1.172 24 C -0.300 4.300 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.201 0.799 38 H 0.221 0.779 39 H 0.091 0.909 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.852 11.141 -4.634 13.876 hybrid contribution 0.147 0.306 0.322 0.468 sum -6.705 11.447 -4.311 13.949 Atomic orbital electron populations 1.21329 0.93287 1.01584 1.01478 1.22370 0.94912 0.94595 1.06237 0.88238 1.23119 1.02118 1.00544 0.94632 1.23084 0.99651 1.00781 0.94220 0.88044 1.20749 0.92799 0.87774 0.94725 1.46110 1.53854 1.24944 1.10711 1.21564 0.99673 1.00221 0.83237 1.17351 0.91397 0.89065 0.91993 1.19678 1.10599 1.02918 0.94207 1.19800 1.03406 0.95773 0.97770 1.17755 0.97168 0.91724 0.93883 1.41855 1.56973 1.33396 1.10612 1.17160 0.91929 0.92760 0.90722 1.19098 1.39719 0.97753 0.91562 0.89580 1.26041 0.91486 0.98359 0.97306 1.69733 1.37230 1.30376 1.07543 0.86360 0.78110 0.83280 0.77968 1.19690 1.22714 1.17158 1.20388 1.09762 0.99774 1.00075 0.92715 0.92558 0.92519 0.89275 0.88900 0.90917 0.91955 0.94686 0.91399 0.93065 0.88833 0.89214 0.79864 0.77886 0.90915 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.19 37.16 0.38 -0.79 16 2 C -0.16 -1.83 6.12 -90.63 -0.56 -2.39 16 3 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.17 -2.15 9.57 -26.70 -0.26 -2.41 16 5 C -0.16 -2.19 5.73 -90.59 -0.52 -2.71 16 6 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 7 C 0.16 2.49 5.48 -4.04 -0.02 2.46 16 8 N -0.64 -12.08 3.01 -179.62 -0.54 -12.62 16 9 C 0.10 1.68 10.23 59.85 0.61 2.29 16 10 C 0.20 4.45 6.55 -83.78 -0.55 3.90 16 11 C -0.25 -5.34 9.20 -39.14 -0.36 -5.70 16 12 C -0.14 -3.10 9.87 -39.46 -0.39 -3.49 16 13 C 0.10 2.26 6.79 -83.23 -0.56 1.69 16 14 N -0.89 -17.79 8.97 32.75 0.29 -17.50 16 15 C 0.08 2.06 5.13 -106.65 -0.55 1.51 16 16 C -0.45 -12.27 8.88 -37.91 -0.34 -12.61 16 17 H 0.09 2.41 7.10 -52.49 -0.37 2.04 16 18 C 0.08 2.26 5.41 -17.33 -0.09 2.17 16 19 N -0.82 -22.44 13.93 55.54 0.77 -21.67 16 20 Si 0.91 21.63 24.24 -169.99 -4.12 17.51 16 21 H -0.27 -6.06 5.15 56.52 0.29 -5.77 16 22 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.25 -6.14 7.00 56.52 0.40 -5.74 16 24 C -0.28 -6.84 6.39 -38.75 -0.25 -7.09 16 25 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 29 H 0.09 1.19 7.50 -51.93 -0.39 0.81 16 30 H 0.07 1.12 5.91 -51.92 -0.31 0.81 16 31 H 0.06 0.83 7.89 -51.93 -0.41 0.42 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.32 4.42 -51.93 -0.23 1.09 16 34 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 35 H 0.09 1.78 5.31 -52.49 -0.28 1.50 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.38 6.29 8.84 -40.82 -0.36 5.93 16 38 H 0.39 7.97 7.19 -40.82 -0.29 7.67 16 39 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 40 H 0.10 2.60 2.98 -52.49 -0.16 2.45 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -28.62 312.98 -8.15 -36.77 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -5.82 Total: 15.93 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.45 Total: -23.15 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.53 Total: -51.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.12 Total: 17.51 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.62 -8.15 -36.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127403038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.453 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds