Wall clock time and date at job start Mon Mar 30 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.54664 * 2 1 4 4 C 1.52994 * 117.49910 * 214.33447 * 2 1 3 5 5 C 1.52992 * 117.49985 * 145.67455 * 2 1 3 6 6 H 1.09006 * 117.49958 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.50067 * 214.98416 * 5 2 1 8 8 N 1.46501 * 109.47475 * 175.00151 * 7 5 2 9 9 C 1.46508 * 119.99545 * 269.99893 * 8 7 5 10 10 C 1.39851 * 120.00362 * 89.99377 * 8 7 5 11 11 C 1.39602 * 119.83408 * 0.02562 * 10 8 7 12 12 C 1.38067 * 120.54369 * 179.97438 * 11 10 8 13 13 C 1.38736 * 120.22142 * 0.02562 * 12 11 10 14 14 N 1.38859 * 120.16494 * 179.97438 * 13 12 11 15 15 C 1.41561 * 119.67163 * 359.97438 * 13 12 11 16 16 C 1.41034 * 120.26550 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99889 * 330.02437 * 16 15 13 18 18 C 1.39888 * 119.99820 * 150.02117 * 16 15 13 19 19 N 1.30893 * 119.99895 * 162.25857 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 342.26077 * 18 16 15 21 21 H 1.48489 * 109.47344 * 91.55520 * 20 18 16 22 22 H 1.48504 * 109.46599 * 211.55541 * 20 18 16 23 23 H 1.48504 * 109.47017 * 331.55004 * 20 18 16 24 24 C 1.38000 * 119.83688 * 179.72926 * 10 8 7 25 25 H 1.09004 * 109.47300 * 154.41101 * 1 2 3 26 26 H 1.09004 * 109.47320 * 34.41386 * 1 2 3 27 27 H 1.09002 * 109.47462 * 274.41629 * 1 2 3 28 28 H 1.09004 * 117.49912 * 0.02562 * 4 2 1 29 29 H 1.08997 * 117.50131 * 144.99773 * 4 2 1 30 30 H 1.09007 * 109.46692 * 294.99687 * 7 5 2 31 31 H 1.08994 * 109.47224 * 54.99074 * 7 5 2 32 32 H 1.08996 * 109.46921 * 89.99915 * 9 8 7 33 33 H 1.08996 * 109.46312 * 210.00010 * 9 8 7 34 34 H 1.08996 * 109.46511 * 329.99688 * 9 8 7 35 35 H 1.07992 * 119.73452 * 359.97438 * 11 10 8 36 36 H 1.07995 * 119.88673 * 180.02562 * 12 11 10 37 37 H 0.97006 * 120.00014 * 353.94516 * 14 13 12 38 38 H 0.97001 * 120.00468 * 173.94696 * 14 13 12 39 39 H 0.97005 * 120.00527 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.11972 * 359.97438 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1206 -0.7654 5 6 2.2364 -1.1207 0.7652 6 1 1.6112 -1.8584 1.2684 7 6 3.5489 -0.7755 1.4717 8 7 4.0085 -1.9339 2.2418 9 6 3.5873 -2.1012 3.6350 10 6 4.8492 -2.8802 1.6470 11 6 5.2488 -2.7171 0.3194 12 6 6.0788 -3.6420 -0.2822 13 6 6.5251 -4.7465 0.4290 14 7 7.3595 -5.6762 -0.1773 15 6 6.1257 -4.9209 1.7758 16 6 6.5723 -6.0388 2.5106 17 1 6.7845 -6.9685 2.0036 18 6 6.7406 -5.9433 3.8960 19 7 6.8119 -7.0294 4.6231 20 14 6.8635 -4.2657 4.7085 21 1 5.5107 -3.8171 5.1250 22 1 7.7438 -4.3567 5.9010 23 1 7.4340 -3.2899 3.7454 24 6 5.2846 -3.9671 2.3773 25 1 -0.3634 -0.9269 -0.4439 26 1 -0.3634 0.8478 -0.5808 27 1 -0.3634 0.0791 1.0246 28 1 1.6112 -1.8577 -1.2694 29 1 3.1713 -0.8745 -1.2689 30 1 4.3022 -0.5105 0.7296 31 1 3.3890 0.0675 2.1439 32 1 2.6618 -2.6759 3.6682 33 1 4.3635 -2.6299 4.1881 34 1 3.4234 -1.1221 4.0849 35 1 4.9059 -1.8606 -0.2419 36 1 6.3817 -3.5052 -1.3097 37 1 7.5611 -5.6028 -1.1234 38 1 7.7408 -6.3991 0.3450 39 1 6.9289 -6.9633 5.5837 40 1 4.9776 -4.0872 3.4057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127403038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:16 Heat of formation + Delta-G solvation = 34.888371 kcal Electronic energy + Delta-G solvation = -19575.985299 eV Core-core repulsion = 16776.280685 eV Total energy + Delta-G solvation = -2799.704614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31196 -38.92506 -37.03330 -35.32465 -33.84053 -32.24308 -30.41764 -28.86056 -28.31396 -26.53031 -24.97998 -23.05159 -22.15416 -21.20873 -20.74796 -19.13181 -18.25546 -17.44771 -16.80154 -16.46332 -16.13184 -15.87449 -15.22239 -15.03719 -14.68924 -14.58434 -13.99645 -13.93205 -13.75217 -13.50000 -13.17680 -13.05135 -12.91064 -12.62323 -12.48521 -12.44218 -12.32501 -12.15059 -11.75499 -11.36901 -11.30840 -10.85052 -10.80991 -10.55838 -9.36562 -9.28874 -8.77283 -7.45087 -6.14448 0.93148 1.19932 1.26967 1.52140 1.53912 2.18961 2.47769 2.76783 2.97308 3.68486 3.72068 3.84505 3.97343 4.11669 4.29072 4.41706 4.45403 4.49221 4.61622 4.67883 4.76718 4.85654 4.87278 4.96884 4.97505 5.00322 5.04443 5.12977 5.21730 5.33175 5.36722 5.48733 5.51303 5.70991 5.81853 5.97646 6.21748 6.35972 6.64235 6.84612 6.93589 7.00690 7.31579 7.58926 8.31487 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.006326 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.304020 B = 4425.166578 C = 5256.972646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 H 0.116 0.884 4 C -0.176 4.176 5 C -0.173 4.173 6 H 0.083 0.917 7 C 0.162 3.838 8 N -0.644 5.644 9 C 0.093 3.907 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.143 4.143 13 C 0.081 3.919 14 N -0.878 5.878 15 C 0.049 3.951 16 C -0.476 4.476 17 H 0.060 0.940 18 C 0.048 3.952 19 N -0.864 5.864 20 Si 0.964 3.036 21 H -0.255 1.255 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.287 4.287 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.393 0.607 38 H 0.390 0.610 39 H 0.287 0.713 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 14.484 -6.235 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 H 0.134 0.866 4 C -0.213 4.213 5 C -0.193 4.193 6 H 0.101 0.899 7 C 0.039 3.961 8 N -0.359 5.359 9 C -0.050 4.050 10 C 0.090 3.910 11 C -0.260 4.260 12 C -0.167 4.167 13 C -0.022 4.022 14 N -0.422 5.422 15 C 0.043 3.957 16 C -0.507 4.507 17 H 0.078 0.922 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.791 3.209 21 H -0.181 1.181 22 H -0.217 1.217 23 H -0.190 1.190 24 C -0.311 4.311 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.222 0.778 38 H 0.217 0.783 39 H 0.097 0.903 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.074 14.455 -5.891 17.574 hybrid contribution 0.412 -0.583 0.509 0.877 sum -7.662 13.873 -5.382 16.737 Atomic orbital electron populations 1.21373 0.92246 1.02147 1.02078 1.22468 0.95661 0.94373 1.03025 0.86582 1.23179 1.02658 1.01612 0.93834 1.22903 0.99441 1.02381 0.94578 0.89852 1.20960 0.93120 0.86981 0.95017 1.46323 1.53042 1.25022 1.11464 1.21646 0.98746 1.02067 0.82565 1.17500 0.91804 0.89244 0.92434 1.20101 1.08892 1.03175 0.93862 1.20201 1.02602 0.94776 0.99121 1.17983 0.97809 0.92925 0.93483 1.41772 1.56233 1.32659 1.11493 1.17341 0.93135 0.93045 0.92144 1.19099 1.41784 0.97651 0.92202 0.92170 1.26609 0.91337 1.00844 0.97601 1.69768 1.39781 1.31670 1.08068 0.85596 0.78747 0.79621 0.76967 1.18082 1.21723 1.18998 1.20499 1.09898 1.00563 1.00098 0.93237 0.90782 0.92111 0.89616 0.88644 0.90873 0.89511 0.94433 0.93848 0.89472 0.85963 0.86065 0.77836 0.78252 0.90344 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 10.19 71.98 0.73 -1.24 16 2 C -0.14 -2.57 6.12 -10.80 -0.07 -2.64 16 3 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 4 C -0.18 -4.00 9.57 30.61 0.29 -3.70 16 5 C -0.17 -4.30 5.73 -10.77 -0.06 -4.36 16 6 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 7 C 0.16 4.34 5.48 86.38 0.47 4.81 16 8 N -0.64 -22.71 3.01 -722.21 -2.18 -24.89 16 9 C 0.09 3.04 10.23 127.77 1.31 4.34 16 10 C 0.19 8.16 6.55 38.13 0.25 8.41 16 11 C -0.24 -9.44 9.20 22.56 0.21 -9.23 16 12 C -0.14 -5.83 9.87 22.35 0.22 -5.61 16 13 C 0.08 3.74 6.79 38.97 0.26 4.01 16 14 N -0.88 -35.06 8.97 -50.31 -0.45 -35.51 16 15 C 0.05 2.56 5.13 -21.18 -0.11 2.45 16 16 C -0.48 -27.06 8.88 23.36 0.21 -26.85 16 17 H 0.06 3.59 7.10 -2.91 -0.02 3.57 16 18 C 0.05 2.66 5.41 85.23 0.46 3.12 16 19 N -0.86 -49.12 13.93 21.82 0.30 -48.82 16 20 Si 0.96 45.65 24.24 68.60 1.66 47.31 16 21 H -0.25 -11.27 5.15 99.48 0.51 -10.76 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -13.15 7.00 99.48 0.70 -12.46 16 24 C -0.29 -14.20 6.39 22.81 0.15 -14.06 16 25 H 0.05 0.86 7.90 -2.38 -0.02 0.84 16 26 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.99 8.05 -2.38 -0.02 1.97 16 29 H 0.10 2.11 7.50 -2.39 -0.02 2.09 16 30 H 0.07 1.95 5.91 -2.38 -0.01 1.93 16 31 H 0.09 1.91 7.89 -2.39 -0.02 1.89 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.63 4.42 -2.39 -0.01 1.62 16 34 H 0.09 2.18 7.89 -2.39 -0.02 2.16 16 35 H 0.12 4.14 5.31 -2.91 -0.02 4.13 16 36 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.39 12.63 8.84 -92.70 -0.82 11.81 16 38 H 0.39 16.24 7.19 -92.71 -0.67 15.57 16 39 H 0.29 14.86 8.30 -92.70 -0.77 14.09 16 40 H 0.10 4.85 2.98 -2.91 -0.01 4.85 16 Total: -1.00 -63.11 312.98 3.04 -60.07 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.62 Total: 42.38 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.33 Total: -40.54 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -2.32 Total: -109.22 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.66 Total: 47.31 kcal Total: -63.11 3.04 -60.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127403038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.959 kcal (2) G-P(sol) polarization free energy of solvation -63.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds