Wall clock time and date at job start Mon Mar 30 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 115.55099 * 2 1 4 4 C 1.53002 * 117.49851 * 145.70378 * 2 1 3 5 5 C 1.53000 * 117.50121 * 214.32737 * 2 1 3 6 6 H 1.08990 * 117.49889 * 144.99691 * 5 2 1 7 7 C 1.53009 * 117.49309 * 0.02562 * 5 2 1 8 8 N 1.46504 * 109.46542 * 174.99966 * 7 5 2 9 9 C 1.46499 * 119.99765 * 269.99458 * 8 7 5 10 10 C 1.39853 * 120.00187 * 89.99836 * 8 7 5 11 11 C 1.39599 * 119.83842 * 359.97438 * 10 8 7 12 12 C 1.38063 * 120.54956 * 180.02562 * 11 10 8 13 13 C 1.38731 * 120.21814 * 359.97244 * 12 11 10 14 14 N 1.38871 * 120.15899 * 180.02562 * 13 12 11 15 15 C 1.41559 * 119.67484 * 0.06314 * 13 12 11 16 16 C 1.41027 * 120.26479 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00245 * 333.72574 * 16 15 13 18 18 C 1.39893 * 119.99560 * 153.72832 * 16 15 13 19 19 N 1.30890 * 120.00384 * 343.88616 * 18 16 15 20 20 Si 1.86802 * 119.99682 * 163.89146 * 18 16 15 21 21 H 1.48494 * 109.47740 * 59.99691 * 20 18 16 22 22 H 1.48504 * 109.46861 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46978 * 299.99393 * 20 18 16 24 24 C 1.38006 * 119.84190 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.47089 * 205.67323 * 1 2 3 26 26 H 1.09006 * 109.46951 * 325.67120 * 1 2 3 27 27 H 1.08997 * 109.46831 * 85.67102 * 1 2 3 28 28 H 1.09004 * 117.49521 * 0.02562 * 4 2 1 29 29 H 1.08998 * 117.50132 * 214.98151 * 4 2 1 30 30 H 1.08993 * 109.46988 * 54.99946 * 7 5 2 31 31 H 1.09000 * 109.47101 * 294.99614 * 7 5 2 32 32 H 1.08997 * 109.47463 * 270.00745 * 9 8 7 33 33 H 1.09005 * 109.47251 * 30.00525 * 9 8 7 34 34 H 1.09004 * 109.47107 * 149.99984 * 9 8 7 35 35 H 1.08005 * 119.72483 * 0.02562 * 11 10 8 36 36 H 1.07995 * 119.88717 * 179.97438 * 12 11 10 37 37 H 0.96991 * 120.00114 * 354.05573 * 14 13 12 38 38 H 0.97003 * 119.99590 * 174.04583 * 14 13 12 39 39 H 0.97000 * 120.00249 * 175.66227 * 19 18 16 40 40 H 1.08000 * 120.11061 * 359.72877 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2366 -1.1207 -0.7653 6 1 3.1714 -0.8747 -1.2688 7 6 1.3588 -2.1554 -1.4726 8 7 2.2059 -3.0697 -2.2425 9 6 2.5392 -2.7614 -3.6354 10 6 2.6963 -4.2367 -1.6480 11 6 2.3769 -4.5268 -0.3203 12 6 2.8534 -5.6744 0.2814 13 6 3.6566 -6.5539 -0.4300 14 7 4.1348 -7.7082 0.1763 15 6 3.9869 -6.2685 -1.7766 16 6 4.8029 -7.1536 -2.5112 17 1 5.5085 -7.7899 -1.9976 18 6 4.6984 -7.2074 -3.9052 19 7 3.6551 -6.6911 -4.5037 20 14 6.0478 -8.0161 -4.9124 21 1 6.1828 -9.4385 -4.5077 22 1 5.7009 -7.9420 -6.3545 23 1 7.3326 -7.3101 -4.6760 24 6 3.4935 -5.0958 -2.3765 25 1 -0.3633 -0.9262 0.4452 26 1 -0.3633 0.8487 0.5796 27 1 -0.3633 0.0776 -1.0247 28 1 1.6112 -1.8591 1.2675 29 1 3.1715 -0.8756 1.2681 30 1 0.6680 -1.6469 -2.1450 31 1 0.7943 -2.7207 -0.7310 32 1 1.7866 -3.1953 -4.2937 33 1 2.5623 -1.6803 -3.7728 34 1 3.5169 -3.1792 -3.8761 35 1 1.7518 -3.8479 0.2408 36 1 2.6000 -5.8882 1.3092 37 1 3.9803 -7.8590 1.1218 38 1 4.6232 -8.3636 -0.3460 39 1 3.6119 -6.6720 -5.4726 40 1 3.7349 -4.8703 -3.4047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127403289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:20 Heat of formation + Delta-G solvation = 50.782418 kcal Electronic energy + Delta-G solvation = -19544.303432 eV Core-core repulsion = 16745.288035 eV Total energy + Delta-G solvation = -2799.015397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.63494 -37.46548 -35.32304 -33.44452 -31.96221 -29.57365 -28.64617 -27.53358 -26.96586 -24.92241 -23.22048 -21.40753 -20.74677 -19.63121 -18.85538 -17.19072 -15.96902 -15.77744 -15.32778 -14.69299 -14.64342 -14.31165 -13.93312 -13.15869 -12.95641 -12.90119 -12.51444 -12.37326 -11.92859 -11.81821 -11.53890 -11.44406 -11.23075 -11.17468 -11.12218 -10.93093 -10.85093 -10.33259 -9.88324 -9.78076 -9.55811 -9.43309 -9.16606 -8.98474 -7.55534 -7.19018 -6.58423 -5.46228 -4.03424 2.94901 3.14477 3.17536 3.34389 3.50311 3.89828 4.06624 4.26990 4.82863 4.88751 5.09625 5.12443 5.37713 5.45786 5.72830 5.80443 5.82092 5.88143 5.92240 5.96018 6.03850 6.07436 6.09776 6.34887 6.39513 6.41265 6.49945 6.55569 6.73233 7.15051 7.21851 7.35979 7.41812 7.77129 7.93383 7.95070 8.17678 8.50352 8.63683 8.88221 8.96497 9.04793 9.29192 9.37680 10.41077 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025418 B = 0.005646 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.332550 B = 4958.361754 C = 5766.132782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.163 4.163 3 H 0.096 0.904 4 C -0.168 4.168 5 C -0.156 4.156 6 H 0.100 0.900 7 C 0.168 3.832 8 N -0.641 5.641 9 C 0.109 3.891 10 C 0.177 3.823 11 C -0.248 4.248 12 C -0.152 4.152 13 C 0.083 3.917 14 N -0.889 5.889 15 C 0.094 3.906 16 C -0.465 4.465 17 H 0.070 0.930 18 C 0.078 3.922 19 N -0.801 5.801 20 Si 0.898 3.102 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.201 4.201 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.373 0.627 38 H 0.388 0.612 39 H 0.275 0.725 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 8.535 3.923 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.182 4.182 3 H 0.114 0.886 4 C -0.205 4.205 5 C -0.177 4.177 6 H 0.118 0.882 7 C 0.043 3.957 8 N -0.357 5.357 9 C -0.035 4.035 10 C 0.080 3.920 11 C -0.272 4.272 12 C -0.176 4.176 13 C -0.018 4.018 14 N -0.432 5.432 15 C 0.089 3.911 16 C -0.496 4.496 17 H 0.088 0.912 18 C -0.137 4.137 19 N -0.429 5.429 20 Si 0.723 3.277 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.225 4.225 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.086 0.914 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.354 8.670 3.543 9.949 hybrid contribution 0.795 -0.601 -0.345 1.055 sum -2.558 8.069 3.198 9.049 Atomic orbital electron populations 1.21319 0.93229 1.01687 1.01564 1.22354 0.95131 0.94284 1.06428 0.88559 1.23067 1.01980 1.00693 0.94778 1.23080 1.01400 0.98980 0.94191 0.88220 1.20633 0.91122 0.89408 0.94552 1.46028 1.56660 1.22326 1.10668 1.21326 1.00860 0.98211 0.83062 1.17520 0.96214 0.86370 0.91881 1.19669 1.12053 1.01082 0.94383 1.19711 1.03554 0.96794 0.97564 1.17870 1.00311 0.89245 0.94336 1.41801 1.67693 1.23292 1.10420 1.16991 0.92900 0.91960 0.89251 1.19103 1.19186 1.20187 0.91161 0.91222 1.25708 0.94901 0.94672 0.98446 1.69872 1.25123 1.37222 1.10637 0.86551 0.82256 0.80286 0.78580 1.19365 1.20631 1.19243 1.20658 1.05987 0.95050 1.00785 0.92438 0.92676 0.92365 0.88840 0.89450 0.92229 0.91170 0.94785 0.93812 0.91550 0.89447 0.89857 0.80180 0.78370 0.91430 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.16 -1.97 6.41 -90.62 -0.58 -2.55 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.17 -2.31 9.57 -26.73 -0.26 -2.57 16 5 C -0.16 -2.31 6.01 -90.61 -0.54 -2.86 16 6 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 7 C 0.17 2.74 4.52 -4.04 -0.02 2.72 16 8 N -0.64 -12.76 3.01 -179.62 -0.54 -13.30 16 9 C 0.11 1.98 10.18 59.85 0.61 2.59 16 10 C 0.18 4.18 6.55 -83.78 -0.55 3.63 16 11 C -0.25 -5.67 9.20 -39.14 -0.36 -6.03 16 12 C -0.15 -3.52 9.87 -39.46 -0.39 -3.91 16 13 C 0.08 2.04 6.79 -83.23 -0.56 1.48 16 14 N -0.89 -18.48 8.97 32.75 0.29 -18.19 16 15 C 0.09 2.52 5.57 -106.66 -0.59 1.93 16 16 C -0.47 -12.33 8.44 -37.91 -0.32 -12.65 16 17 H 0.07 1.76 6.79 -52.49 -0.36 1.41 16 18 C 0.08 1.99 5.16 -17.33 -0.09 1.90 16 19 N -0.80 -21.05 10.96 55.55 0.61 -20.44 16 20 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 C -0.20 -5.26 7.82 -38.75 -0.30 -5.56 16 25 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 28 H 0.09 1.31 7.40 -51.93 -0.38 0.92 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.87 7.70 -51.93 -0.40 0.47 16 31 H 0.07 1.19 5.91 -51.93 -0.31 0.88 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.07 1.31 6.19 -51.93 -0.32 0.99 16 35 H 0.09 1.81 5.30 -52.48 -0.28 1.53 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.37 6.57 8.84 -40.82 -0.36 6.21 16 38 H 0.39 7.94 7.12 -40.82 -0.29 7.65 16 39 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.12 3.29 4.26 -52.49 -0.22 3.07 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -28.32 319.50 -9.30 -37.62 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -5.83 Total: 18.27 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.62 Total: -22.81 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.36 Total: -51.93 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.32 -9.30 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127403289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.401 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds