Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 115.55099 * 2 1 4 4 C 1.53002 * 117.49851 * 145.70378 * 2 1 3 5 5 C 1.53000 * 117.50121 * 214.32737 * 2 1 3 6 6 H 1.08990 * 117.49889 * 144.99691 * 5 2 1 7 7 C 1.53009 * 117.49309 * 0.02562 * 5 2 1 8 8 N 1.46504 * 109.46542 * 174.99966 * 7 5 2 9 9 C 1.46499 * 119.99765 * 269.99458 * 8 7 5 10 10 C 1.39853 * 120.00187 * 89.99836 * 8 7 5 11 11 C 1.39599 * 119.83842 * 359.97438 * 10 8 7 12 12 C 1.38063 * 120.54956 * 180.02562 * 11 10 8 13 13 C 1.38731 * 120.21814 * 359.97244 * 12 11 10 14 14 N 1.38871 * 120.15899 * 180.02562 * 13 12 11 15 15 C 1.41559 * 119.67484 * 0.06314 * 13 12 11 16 16 C 1.41027 * 120.26479 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00245 * 333.72574 * 16 15 13 18 18 C 1.39893 * 119.99560 * 153.72832 * 16 15 13 19 19 N 1.30890 * 120.00384 * 343.88616 * 18 16 15 20 20 Si 1.86802 * 119.99682 * 163.89146 * 18 16 15 21 21 H 1.48494 * 109.47740 * 59.99691 * 20 18 16 22 22 H 1.48504 * 109.46861 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46978 * 299.99393 * 20 18 16 24 24 C 1.38006 * 119.84190 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.47089 * 205.67323 * 1 2 3 26 26 H 1.09006 * 109.46951 * 325.67120 * 1 2 3 27 27 H 1.08997 * 109.46831 * 85.67102 * 1 2 3 28 28 H 1.09004 * 117.49521 * 0.02562 * 4 2 1 29 29 H 1.08998 * 117.50132 * 214.98151 * 4 2 1 30 30 H 1.08993 * 109.46988 * 54.99946 * 7 5 2 31 31 H 1.09000 * 109.47101 * 294.99614 * 7 5 2 32 32 H 1.08997 * 109.47463 * 270.00745 * 9 8 7 33 33 H 1.09005 * 109.47251 * 30.00525 * 9 8 7 34 34 H 1.09004 * 109.47107 * 149.99984 * 9 8 7 35 35 H 1.08005 * 119.72483 * 0.02562 * 11 10 8 36 36 H 1.07995 * 119.88717 * 179.97438 * 12 11 10 37 37 H 0.96991 * 120.00114 * 354.05573 * 14 13 12 38 38 H 0.97003 * 119.99590 * 174.04583 * 14 13 12 39 39 H 0.97000 * 120.00249 * 175.66227 * 19 18 16 40 40 H 1.08000 * 120.11061 * 359.72877 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2365 -1.1212 0.7647 5 6 2.2366 -1.1207 -0.7653 6 1 3.1714 -0.8747 -1.2688 7 6 1.3588 -2.1554 -1.4726 8 7 2.2059 -3.0697 -2.2425 9 6 2.5392 -2.7614 -3.6354 10 6 2.6963 -4.2367 -1.6480 11 6 2.3769 -4.5268 -0.3203 12 6 2.8534 -5.6744 0.2814 13 6 3.6566 -6.5539 -0.4300 14 7 4.1348 -7.7082 0.1763 15 6 3.9869 -6.2685 -1.7766 16 6 4.8029 -7.1536 -2.5112 17 1 5.5085 -7.7899 -1.9976 18 6 4.6984 -7.2074 -3.9052 19 7 3.6551 -6.6911 -4.5037 20 14 6.0478 -8.0161 -4.9124 21 1 6.1828 -9.4385 -4.5077 22 1 5.7009 -7.9420 -6.3545 23 1 7.3326 -7.3101 -4.6760 24 6 3.4935 -5.0958 -2.3765 25 1 -0.3633 -0.9262 0.4452 26 1 -0.3633 0.8487 0.5796 27 1 -0.3633 0.0776 -1.0247 28 1 1.6112 -1.8591 1.2675 29 1 3.1715 -0.8756 1.2681 30 1 0.6680 -1.6469 -2.1450 31 1 0.7943 -2.7207 -0.7310 32 1 1.7866 -3.1953 -4.2937 33 1 2.5623 -1.6803 -3.7728 34 1 3.5169 -3.1792 -3.8761 35 1 1.7518 -3.8479 0.2408 36 1 2.6000 -5.8882 1.3092 37 1 3.9803 -7.8590 1.1218 38 1 4.6232 -8.3636 -0.3460 39 1 3.6119 -6.6720 -5.4726 40 1 3.7349 -4.8703 -3.4047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127403289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = 35.860773 kcal Electronic energy + Delta-G solvation = -19544.950483 eV Core-core repulsion = 16745.288035 eV Total energy + Delta-G solvation = -2799.662448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14243 -38.91317 -36.87217 -35.33339 -33.65232 -31.40575 -29.81668 -28.86246 -28.58570 -26.74197 -24.81682 -22.87674 -22.25335 -21.13517 -20.21661 -18.95003 -17.75968 -17.30975 -16.89689 -16.42781 -16.18935 -15.61166 -15.33461 -14.83153 -14.31869 -14.21735 -14.02927 -13.61699 -13.53235 -13.40065 -13.19484 -12.86958 -12.81619 -12.68788 -12.48513 -12.39126 -12.17722 -12.05165 -11.72056 -11.32179 -10.98883 -10.87996 -10.74391 -10.57342 -9.21303 -9.10180 -8.47593 -7.22429 -5.98033 1.15267 1.41396 1.50351 1.54129 1.67217 2.28847 2.60566 2.93495 3.01063 3.78939 3.83148 3.98681 4.01578 4.07529 4.40986 4.46298 4.49222 4.64345 4.68864 4.71670 4.89251 4.92164 4.98897 5.00107 5.01345 5.08785 5.22912 5.27389 5.35307 5.41644 5.49714 5.50158 5.62648 5.94041 6.10547 6.16023 6.33167 6.60356 6.91200 7.07106 7.11791 7.20264 7.49308 7.68788 8.53493 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025418 B = 0.005646 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.332550 B = 4958.361754 C = 5766.132782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.135 4.135 3 H 0.111 0.889 4 C -0.177 4.177 5 C -0.174 4.174 6 H 0.085 0.915 7 C 0.169 3.831 8 N -0.645 5.645 9 C 0.112 3.888 10 C 0.171 3.829 11 C -0.248 4.248 12 C -0.158 4.158 13 C 0.067 3.933 14 N -0.880 5.880 15 C 0.058 3.942 16 C -0.494 4.494 17 H 0.072 0.928 18 C 0.037 3.963 19 N -0.834 5.834 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.226 4.226 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.390 0.610 38 H 0.389 0.611 39 H 0.279 0.721 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 9.643 4.598 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 H 0.129 0.871 4 C -0.214 4.214 5 C -0.194 4.194 6 H 0.104 0.896 7 C 0.045 3.955 8 N -0.360 5.360 9 C -0.032 4.032 10 C 0.072 3.928 11 C -0.272 4.272 12 C -0.182 4.182 13 C -0.035 4.035 14 N -0.424 5.424 15 C 0.053 3.947 16 C -0.526 4.526 17 H 0.090 0.910 18 C -0.176 4.176 19 N -0.462 5.462 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.250 4.250 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.089 0.911 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.904 9.794 4.245 11.366 hybrid contribution 0.882 -0.858 -0.480 1.321 sum -3.021 8.936 3.766 10.157 Atomic orbital electron populations 1.21376 0.91857 1.02377 1.02352 1.22456 0.96064 0.93914 1.02913 0.87063 1.23117 1.02504 1.01865 0.93915 1.22884 1.01296 1.00582 0.94611 0.89632 1.20775 0.91046 0.89060 0.94590 1.46232 1.56617 1.21809 1.11386 1.21328 0.99368 1.00124 0.82351 1.17662 0.95601 0.87248 0.92274 1.19971 1.11696 1.01297 0.94198 1.20060 1.02880 0.96535 0.98736 1.18060 1.00812 0.90596 0.94058 1.41672 1.67216 1.22226 1.11249 1.17389 0.93953 0.92628 0.90739 1.19352 1.19976 1.21027 0.92204 0.91042 1.26496 0.96851 0.95088 0.99161 1.69952 1.26697 1.38474 1.11033 0.85454 0.78959 0.79359 0.77044 1.18593 1.19904 1.19157 1.20689 1.07674 0.96095 1.00581 0.92858 0.90768 0.91711 0.89132 0.89358 0.90230 0.91767 0.95147 0.90380 0.93933 0.87245 0.87258 0.78276 0.78302 0.91079 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.19 71.98 0.66 -1.52 16 2 C -0.13 -2.86 6.41 -10.79 -0.07 -2.93 16 3 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 4 C -0.18 -4.54 9.57 30.60 0.29 -4.24 16 5 C -0.17 -4.85 6.01 -10.79 -0.06 -4.91 16 6 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 7 C 0.17 5.24 4.52 86.38 0.39 5.63 16 8 N -0.64 -25.52 3.01 -722.19 -2.18 -27.69 16 9 C 0.11 4.08 10.18 127.77 1.30 5.38 16 10 C 0.17 8.16 6.55 38.13 0.25 8.41 16 11 C -0.25 -11.17 9.20 22.56 0.21 -10.96 16 12 C -0.16 -7.19 9.87 22.35 0.22 -6.97 16 13 C 0.07 3.29 6.79 38.96 0.26 3.55 16 14 N -0.88 -36.26 8.97 -50.31 -0.45 -36.71 16 15 C 0.06 3.20 5.57 -21.19 -0.12 3.08 16 16 C -0.49 -26.91 8.44 23.35 0.20 -26.72 16 17 H 0.07 3.70 6.79 -2.91 -0.02 3.68 16 18 C 0.04 1.90 5.16 85.23 0.44 2.34 16 19 N -0.83 -45.14 10.96 21.82 0.24 -44.90 16 20 Si 0.97 39.71 29.59 68.60 2.03 41.74 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.23 -12.25 7.82 22.81 0.18 -12.07 16 25 H 0.05 1.00 7.90 -2.39 -0.02 0.98 16 26 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.06 1.09 7.83 -2.39 -0.02 1.07 16 28 H 0.09 2.37 7.40 -2.39 -0.02 2.35 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 2.14 7.70 -2.39 -0.02 2.12 16 31 H 0.06 2.06 5.91 -2.39 -0.01 2.05 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.26 8.07 -2.38 -0.02 2.24 16 34 H 0.04 1.74 6.19 -2.38 -0.01 1.73 16 35 H 0.11 4.36 5.30 -2.91 -0.02 4.34 16 36 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.39 13.25 8.84 -92.72 -0.82 12.43 16 38 H 0.39 15.95 7.12 -92.71 -0.66 15.29 16 39 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16 40 H 0.11 6.04 4.26 -2.91 -0.01 6.03 16 Total: -1.00 -61.91 319.50 3.37 -58.53 By element: Atomic # 1 Polarization: 51.39 SS G_CDS: -0.42 Total: 50.97 kcal Atomic # 6 Polarization: -46.10 SS G_CDS: 4.15 Total: -41.94 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -2.39 Total: -109.30 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -61.91 3.37 -58.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127403289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.392 kcal (2) G-P(sol) polarization free energy of solvation -61.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds