Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46845 * 2 1 4 4 C 1.53006 * 109.46882 * 119.99749 * 2 1 3 5 5 C 1.53000 * 109.46885 * 185.00223 * 4 2 1 6 6 C 1.53000 * 117.49852 * 243.74831 * 5 4 2 7 7 C 1.53000 * 117.49835 * 175.08740 * 5 4 2 8 8 N 1.46497 * 109.47225 * 239.99831 * 2 1 3 9 9 C 1.39854 * 120.00025 * 85.00173 * 8 2 1 10 10 C 1.39605 * 119.83899 * 359.97438 * 9 8 2 11 11 C 1.38048 * 120.54951 * 179.97438 * 10 9 8 12 12 C 1.38739 * 120.22231 * 359.78265 * 11 10 9 13 13 N 1.38861 * 120.16657 * 180.25759 * 12 11 10 14 14 C 1.41565 * 119.67195 * 0.48907 * 12 11 10 15 15 C 1.41029 * 120.27136 * 179.76830 * 14 12 11 16 16 H 1.08003 * 119.99334 * 333.08390 * 15 14 12 17 17 C 1.39881 * 120.00016 * 153.36171 * 15 14 12 18 18 N 1.30893 * 120.00259 * 343.99192 * 17 15 14 19 19 Si 1.86805 * 119.99851 * 163.99469 * 17 15 14 20 20 H 1.48506 * 109.46825 * 89.99592 * 19 17 15 21 21 H 1.48497 * 109.47152 * 210.00039 * 19 17 15 22 22 H 1.48498 * 109.47044 * 330.00196 * 19 17 15 23 23 C 1.38000 * 119.84204 * 179.97438 * 9 8 2 24 24 H 1.08996 * 109.46845 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46917 * 300.00029 * 1 2 3 26 26 H 1.09000 * 109.46646 * 60.00056 * 1 2 3 27 27 H 1.09000 * 109.46886 * 304.99782 * 4 2 1 28 28 H 1.08992 * 109.47137 * 65.00471 * 4 2 1 29 29 H 1.09004 * 115.54866 * 29.41347 * 5 4 2 30 30 H 1.09000 * 117.49717 * 359.97438 * 6 5 4 31 31 H 1.09002 * 117.49723 * 145.02137 * 6 5 4 32 32 H 1.09003 * 117.49448 * 214.97469 * 7 5 4 33 33 H 1.08993 * 117.49933 * 359.97438 * 7 5 4 34 34 H 0.96999 * 119.99963 * 265.00201 * 8 2 1 35 35 H 1.08005 * 119.72198 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.89021 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00166 * 180.23618 * 13 12 11 38 38 H 0.96995 * 120.00174 * 0.23783 * 13 12 11 39 39 H 0.96998 * 120.00256 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.11491 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.3697 -1.9109 1.2177 7 6 4.2609 -1.1745 2.5553 8 7 2.0184 -0.6906 -1.1961 9 6 2.1520 0.0070 -2.4008 10 6 1.8185 1.3614 -2.4599 11 6 1.9453 2.0643 -3.6412 12 6 2.4111 1.4309 -4.7843 13 7 2.5432 2.1404 -5.9706 14 6 2.7465 0.0564 -4.7365 15 6 3.2166 -0.6013 -5.8921 16 1 2.9322 -0.2431 -6.8705 17 6 4.0463 -1.7209 -5.7709 18 7 4.6396 -1.9757 -4.6323 19 14 4.3077 -2.8525 -7.2341 20 1 5.4753 -2.3815 -8.0216 21 1 4.5603 -4.2342 -6.7523 22 1 3.0952 -2.8410 -8.0914 23 6 2.6129 -0.6466 -3.5254 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 3.9926 0.2793 0.8572 30 1 3.8128 -2.8416 1.1089 31 1 5.3271 -1.8719 0.6982 32 1 5.1470 -0.6515 2.9151 33 1 3.6326 -1.6204 3.3262 34 1 2.2491 -1.6318 -1.1525 35 1 1.4592 1.8635 -1.5738 36 1 1.6846 3.1119 -3.6748 37 1 2.8659 1.6943 -6.7692 38 1 2.3128 3.0821 -6.0007 39 1 5.2147 -2.7523 -4.5482 40 1 2.8695 -1.6946 -3.4761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127406206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = 35.722998 kcal Electronic energy + Delta-G solvation = -19357.437098 eV Core-core repulsion = 16557.768676 eV Total energy + Delta-G solvation = -2799.668422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -38.39590 -37.40135 -35.51791 -33.40945 -32.69523 -29.94607 -29.32949 -27.19461 -25.90084 -24.68138 -22.20895 -21.60685 -20.81913 -20.07521 -19.45180 -17.06664 -16.16677 -15.55584 -15.31757 -15.10669 -14.61421 -14.41357 -14.17322 -13.20624 -12.81362 -12.57431 -12.41070 -12.17609 -11.98951 -11.74042 -11.56030 -11.37955 -11.25829 -11.11309 -10.94124 -10.91983 -10.64261 -10.35140 -9.98139 -9.84812 -9.72976 -9.60740 -9.23810 -9.00756 -7.68985 -7.16580 -6.57031 -5.45881 -4.02107 2.94237 3.15126 3.19453 3.34849 3.54057 3.97460 4.06552 4.51615 4.76516 4.86397 5.06056 5.13483 5.38022 5.46867 5.56728 5.71673 5.73421 5.81907 5.91786 5.95566 6.04895 6.09370 6.16100 6.26571 6.38466 6.43648 6.52607 6.61192 6.74973 7.17798 7.22201 7.36972 7.55192 7.77485 7.94012 8.06411 8.18791 8.51384 8.82745 8.96905 9.01585 9.05875 9.30757 9.39748 10.41945 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.006145 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.158151 B = 4555.396877 C = 5634.262730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.094 4.094 5 C -0.138 4.138 6 C -0.174 4.174 7 C -0.191 4.191 8 N -0.752 5.752 9 C 0.182 3.818 10 C -0.257 4.257 11 C -0.153 4.153 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.899 3.101 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.201 4.201 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.386 0.614 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.388 0.612 38 H 0.373 0.627 39 H 0.274 0.726 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 0.659 8.907 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.054 3.946 3 H 0.089 0.911 4 C -0.132 4.132 5 C -0.156 4.156 6 C -0.211 4.211 7 C -0.228 4.228 8 N -0.386 5.386 9 C 0.083 3.917 10 C -0.280 4.280 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.497 4.497 16 H 0.088 0.912 17 C -0.138 4.138 18 N -0.427 5.427 19 Si 0.724 3.276 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.225 4.225 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.219 0.781 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.216 0.784 38 H 0.198 0.802 39 H 0.084 0.916 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.570 0.574 9.193 9.563 hybrid contribution 0.415 -0.709 -0.913 1.228 sum -2.154 -0.134 8.280 8.557 Atomic orbital electron populations 1.22313 0.97382 1.01481 1.01428 1.20576 0.92379 0.96735 0.84875 0.91099 1.21473 0.92965 1.00874 0.97891 1.22244 0.94287 0.98275 1.00791 1.22968 1.02383 0.96060 0.99714 1.22972 1.02970 1.05273 0.91601 1.44360 1.76161 1.11289 1.06789 1.17499 0.97650 0.91056 0.85473 1.19637 1.18044 0.93424 0.96932 1.19705 1.08052 0.97140 0.92834 1.17867 1.05732 0.91734 0.86490 1.41801 1.79681 1.10994 1.10736 1.16965 0.92172 0.88376 0.93442 1.19105 1.26637 1.10450 0.93477 0.91238 1.25721 0.94127 0.97464 0.96536 1.69878 1.22295 1.24975 1.25536 0.86478 0.79253 0.79633 0.82202 1.19912 1.20432 1.18834 1.20474 1.10610 0.99724 0.91694 0.93153 0.93234 0.91916 0.91149 0.91897 0.87746 0.89143 0.88926 0.89324 0.89335 0.78101 0.89633 0.89953 0.78396 0.80187 0.91559 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.42 37.16 0.35 -2.03 16 2 C 0.16 2.49 2.22 -67.93 -0.15 2.34 16 3 H 0.07 1.18 6.47 -51.93 -0.34 0.84 16 4 C -0.09 -1.20 5.04 -26.73 -0.13 -1.34 16 5 C -0.14 -1.86 5.47 -90.62 -0.50 -2.36 16 6 C -0.17 -2.31 10.18 -26.69 -0.27 -2.58 16 7 C -0.19 -2.21 10.25 -26.69 -0.27 -2.49 16 8 N -0.75 -14.20 4.98 -52.17 -0.26 -14.46 16 9 C 0.18 4.20 6.63 -83.77 -0.56 3.65 16 10 C -0.26 -5.82 8.84 -39.14 -0.35 -6.16 16 11 C -0.15 -3.54 9.86 -39.47 -0.39 -3.93 16 12 C 0.08 2.02 6.79 -83.22 -0.56 1.46 16 13 N -0.89 -18.51 8.98 32.75 0.29 -18.21 16 14 C 0.10 2.56 5.57 -106.66 -0.59 1.96 16 15 C -0.47 -12.34 8.47 -37.91 -0.32 -12.67 16 16 H 0.07 1.76 6.73 -52.48 -0.35 1.41 16 17 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 18 N -0.80 -21.05 10.97 55.54 0.61 -20.44 16 19 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.20 -5.22 8.49 -38.75 -0.33 -5.55 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.02 7.69 -51.93 -0.40 0.62 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 29 H 0.10 1.60 8.08 -51.93 -0.42 1.18 16 30 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.39 7.18 8.61 -40.82 -0.35 6.83 16 35 H 0.09 1.77 6.06 -52.48 -0.32 1.45 16 36 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.39 7.93 7.07 -40.82 -0.29 7.64 16 38 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 39 H 0.27 6.65 8.30 -40.82 -0.34 6.32 16 40 H 0.12 3.14 6.23 -52.48 -0.33 2.81 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -27.80 325.09 -9.72 -37.52 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: -6.07 Total: 24.41 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -4.17 Total: -27.81 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.64 Total: -53.12 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.80 -9.72 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127406206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.247 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds