Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46845 * 2 1 4 4 C 1.53006 * 109.46882 * 119.99749 * 2 1 3 5 5 C 1.53000 * 109.46885 * 185.00223 * 4 2 1 6 6 C 1.53000 * 117.49852 * 243.74831 * 5 4 2 7 7 C 1.53000 * 117.49835 * 175.08740 * 5 4 2 8 8 N 1.46497 * 109.47225 * 239.99831 * 2 1 3 9 9 C 1.39854 * 120.00025 * 85.00173 * 8 2 1 10 10 C 1.39605 * 119.83899 * 359.97438 * 9 8 2 11 11 C 1.38048 * 120.54951 * 179.97438 * 10 9 8 12 12 C 1.38739 * 120.22231 * 359.78265 * 11 10 9 13 13 N 1.38861 * 120.16657 * 180.25759 * 12 11 10 14 14 C 1.41565 * 119.67195 * 0.48907 * 12 11 10 15 15 C 1.41029 * 120.27136 * 179.76830 * 14 12 11 16 16 H 1.08003 * 119.99334 * 333.08390 * 15 14 12 17 17 C 1.39881 * 120.00016 * 153.36171 * 15 14 12 18 18 N 1.30893 * 120.00259 * 343.99192 * 17 15 14 19 19 Si 1.86805 * 119.99851 * 163.99469 * 17 15 14 20 20 H 1.48506 * 109.46825 * 89.99592 * 19 17 15 21 21 H 1.48497 * 109.47152 * 210.00039 * 19 17 15 22 22 H 1.48498 * 109.47044 * 330.00196 * 19 17 15 23 23 C 1.38000 * 119.84204 * 179.97438 * 9 8 2 24 24 H 1.08996 * 109.46845 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46917 * 300.00029 * 1 2 3 26 26 H 1.09000 * 109.46646 * 60.00056 * 1 2 3 27 27 H 1.09000 * 109.46886 * 304.99782 * 4 2 1 28 28 H 1.08992 * 109.47137 * 65.00471 * 4 2 1 29 29 H 1.09004 * 115.54866 * 29.41347 * 5 4 2 30 30 H 1.09000 * 117.49717 * 359.97438 * 6 5 4 31 31 H 1.09002 * 117.49723 * 145.02137 * 6 5 4 32 32 H 1.09003 * 117.49448 * 214.97469 * 7 5 4 33 33 H 1.08993 * 117.49933 * 359.97438 * 7 5 4 34 34 H 0.96999 * 119.99963 * 265.00201 * 8 2 1 35 35 H 1.08005 * 119.72198 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.89021 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00166 * 180.23618 * 13 12 11 38 38 H 0.96995 * 120.00174 * 0.23783 * 13 12 11 39 39 H 0.96998 * 120.00256 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.11491 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.3697 -1.9109 1.2177 7 6 4.2609 -1.1745 2.5553 8 7 2.0184 -0.6906 -1.1961 9 6 2.1520 0.0070 -2.4008 10 6 1.8185 1.3614 -2.4599 11 6 1.9453 2.0643 -3.6412 12 6 2.4111 1.4309 -4.7843 13 7 2.5432 2.1404 -5.9706 14 6 2.7465 0.0564 -4.7365 15 6 3.2166 -0.6013 -5.8921 16 1 2.9322 -0.2431 -6.8705 17 6 4.0463 -1.7209 -5.7709 18 7 4.6396 -1.9757 -4.6323 19 14 4.3077 -2.8525 -7.2341 20 1 5.4753 -2.3815 -8.0216 21 1 4.5603 -4.2342 -6.7523 22 1 3.0952 -2.8410 -8.0914 23 6 2.6129 -0.6466 -3.5254 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.6054 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 3.9926 0.2793 0.8572 30 1 3.8128 -2.8416 1.1089 31 1 5.3271 -1.8719 0.6982 32 1 5.1470 -0.6515 2.9151 33 1 3.6326 -1.6204 3.3262 34 1 2.2491 -1.6318 -1.1525 35 1 1.4592 1.8635 -1.5738 36 1 1.6846 3.1119 -3.6748 37 1 2.8659 1.6943 -6.7692 38 1 2.3128 3.0821 -6.0007 39 1 5.2147 -2.7523 -4.5482 40 1 2.8695 -1.6946 -3.4761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127406206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = 20.433786 kcal Electronic energy + Delta-G solvation = -19358.100088 eV Core-core repulsion = 16557.768676 eV Total energy + Delta-G solvation = -2800.331412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -39.94126 -38.78814 -36.93093 -35.30238 -34.26342 -31.50968 -31.21404 -28.29380 -27.68721 -26.50451 -23.29088 -23.20123 -22.26167 -21.36896 -21.06832 -18.88776 -17.83423 -17.25702 -16.76381 -16.66418 -16.32209 -15.71912 -15.34298 -14.76235 -14.28591 -14.12457 -13.85563 -13.75209 -13.51416 -13.37743 -13.04388 -12.87811 -12.76093 -12.60483 -12.35022 -12.09099 -12.06819 -11.94895 -11.68791 -11.34488 -11.08104 -10.96553 -10.90299 -10.70367 -9.33526 -9.09612 -8.47262 -7.22508 -5.97525 1.15132 1.40924 1.50821 1.55505 1.69600 2.28155 2.92564 2.96437 3.07867 3.70196 3.80102 3.99164 4.03890 4.11166 4.26602 4.42272 4.57787 4.65472 4.70703 4.80320 4.87846 4.90884 5.00320 5.01898 5.10305 5.18170 5.26743 5.28442 5.40298 5.44095 5.47318 5.52396 5.72435 5.95151 6.10764 6.22228 6.34724 6.61042 7.01213 7.11342 7.19926 7.35460 7.52306 7.69550 8.53481 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.006145 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.158151 B = 4555.396877 C = 5634.262730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 H 0.060 0.940 4 C -0.083 4.083 5 C -0.152 4.152 6 C -0.191 4.191 7 C -0.165 4.165 8 N -0.747 5.747 9 C 0.182 3.818 10 C -0.258 4.258 11 C -0.159 4.159 12 C 0.065 3.935 13 N -0.880 5.880 14 C 0.061 3.939 15 C -0.494 4.494 16 H 0.072 0.928 17 C 0.034 3.966 18 N -0.832 5.832 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.262 1.262 23 C -0.226 4.226 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.385 0.615 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.389 0.611 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 0.836 10.186 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.170 4.170 6 C -0.228 4.228 7 C -0.202 4.202 8 N -0.380 5.380 9 C 0.081 3.919 10 C -0.282 4.282 11 C -0.183 4.183 12 C -0.037 4.037 13 N -0.424 5.424 14 C 0.056 3.944 15 C -0.526 4.526 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.460 5.460 19 Si 0.794 3.206 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.251 4.251 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.218 0.782 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.297 0.778 10.495 11.029 hybrid contribution 0.614 -0.687 -1.203 1.515 sum -2.682 0.091 9.293 9.672 Atomic orbital electron populations 1.22229 0.96008 1.01859 1.01799 1.20801 0.93315 0.96192 0.84524 0.92153 1.21403 0.92261 1.01106 0.97276 1.22200 0.94905 0.97328 1.02613 1.22987 1.01839 0.96355 1.01590 1.23047 1.02862 1.03364 0.90891 1.44463 1.75596 1.11250 1.06673 1.17578 0.96569 0.91538 0.86202 1.19935 1.17287 0.93246 0.97713 1.20056 1.07293 0.98436 0.92497 1.18047 1.06078 0.91491 0.88069 1.41670 1.79332 1.11684 1.09716 1.17356 0.93282 0.89799 0.94012 1.19359 1.27697 1.11867 0.93639 0.91024 1.26526 0.93489 0.98492 0.99337 1.69967 1.22942 1.25600 1.27511 0.85367 0.79170 0.77471 0.78569 1.19155 1.19884 1.18610 1.20439 1.12503 0.99066 0.93045 0.92791 0.90174 0.94179 0.88421 0.91239 0.90081 0.88655 0.90560 0.88584 0.87219 0.78168 0.87459 0.87394 0.78304 0.78301 0.91214 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 9.42 71.98 0.68 -3.53 16 2 C 0.16 4.61 2.22 45.00 0.10 4.71 16 3 H 0.06 1.92 6.47 -2.39 -0.02 1.90 16 4 C -0.08 -1.92 5.04 30.60 0.15 -1.76 16 5 C -0.15 -3.93 5.47 -10.79 -0.06 -3.99 16 6 C -0.19 -4.94 10.18 30.62 0.31 -4.63 16 7 C -0.16 -3.43 10.25 30.62 0.31 -3.11 16 8 N -0.75 -28.25 4.98 -318.96 -1.59 -29.84 16 9 C 0.18 8.54 6.63 38.13 0.25 8.79 16 10 C -0.26 -11.57 8.84 22.55 0.20 -11.37 16 11 C -0.16 -7.23 9.86 22.34 0.22 -7.01 16 12 C 0.06 3.21 6.79 38.97 0.26 3.48 16 13 N -0.88 -36.39 8.98 -50.31 -0.45 -36.84 16 14 C 0.06 3.34 5.57 -21.18 -0.12 3.22 16 15 C -0.49 -26.96 8.47 23.35 0.20 -26.76 16 16 H 0.07 3.71 6.73 -2.91 -0.02 3.69 16 17 C 0.03 1.78 5.16 85.23 0.44 2.22 16 18 N -0.83 -45.29 10.97 21.82 0.24 -45.05 16 19 Si 0.97 39.92 29.59 68.60 2.03 41.95 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 C -0.23 -12.19 8.49 22.81 0.19 -12.00 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.23 7.69 -2.39 -0.02 1.21 16 27 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.55 7.87 -2.39 -0.02 1.53 16 29 H 0.08 2.48 8.08 -2.39 -0.02 2.46 16 30 H 0.10 2.34 8.03 -2.39 -0.02 2.32 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.39 14.55 8.61 -92.71 -0.80 13.75 16 35 H 0.11 4.27 6.06 -2.91 -0.02 4.25 16 36 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.39 15.95 7.07 -92.71 -0.65 15.30 16 38 H 0.39 13.32 8.83 -92.71 -0.82 12.50 16 39 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 40 H 0.09 5.40 6.23 -2.91 -0.02 5.38 16 Total: -1.00 -61.33 325.09 2.17 -59.16 By element: Atomic # 1 Polarization: 63.58 SS G_CDS: -1.21 Total: 62.37 kcal Atomic # 6 Polarization: -54.89 SS G_CDS: 3.15 Total: -51.74 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -1.80 Total: -111.73 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -61.33 2.17 -59.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127406206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.590 kcal (2) G-P(sol) polarization free energy of solvation -61.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds