Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47574 * 2 1 4 4 C 1.53005 * 109.47151 * 239.99558 * 2 1 3 5 5 C 1.53010 * 109.46907 * 175.00077 * 4 2 1 6 6 C 1.52998 * 117.49615 * 243.62466 * 5 4 2 7 7 C 1.52997 * 117.49749 * 175.00306 * 5 4 2 8 8 N 1.46499 * 109.47133 * 119.99848 * 2 1 3 9 9 C 1.39856 * 120.00164 * 275.00045 * 8 2 1 10 10 C 1.39599 * 119.83417 * 359.97438 * 9 8 2 11 11 C 1.38064 * 120.54696 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.22018 * 359.78593 * 11 10 9 13 13 N 1.38860 * 120.16453 * 180.25163 * 12 11 10 14 14 C 1.41559 * 119.67068 * 0.48969 * 12 11 10 15 15 C 1.41030 * 120.26527 * 179.76214 * 14 12 11 16 16 H 1.08000 * 120.00240 * 329.08341 * 15 14 12 17 17 C 1.39888 * 119.99869 * 149.35478 * 15 14 12 18 18 N 1.30900 * 120.00362 * 162.17419 * 17 15 14 19 19 Si 1.86805 * 119.99959 * 342.17643 * 17 15 14 20 20 H 1.48507 * 109.46982 * 95.38819 * 19 17 15 21 21 H 1.48499 * 109.47035 * 215.38421 * 19 17 15 22 22 H 1.48498 * 109.47204 * 335.38704 * 19 17 15 23 23 C 1.38002 * 119.84393 * 179.97438 * 9 8 2 24 24 H 1.08999 * 109.46831 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47190 * 300.00106 * 1 2 3 26 26 H 1.08997 * 109.47057 * 60.00705 * 1 2 3 27 27 H 1.08994 * 109.47427 * 294.99672 * 4 2 1 28 28 H 1.08996 * 109.46657 * 55.00502 * 4 2 1 29 29 H 1.08993 * 115.55113 * 29.32909 * 5 4 2 30 30 H 1.09003 * 117.50234 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49859 * 145.02203 * 6 5 4 32 32 H 1.09001 * 117.50219 * 214.98088 * 7 5 4 33 33 H 1.09011 * 117.49924 * 359.97438 * 7 5 4 34 34 H 0.97000 * 120.00437 * 95.00219 * 8 2 1 35 35 H 1.07996 * 119.73051 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.88723 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00056 * 180.23549 * 13 12 11 38 38 H 0.96995 * 120.00090 * 0.24521 * 13 12 11 39 39 H 0.97000 * 120.00578 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.11368 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.1698 0.1512 -2.4928 7 6 4.2803 -1.3736 -2.4321 8 7 2.0183 -0.6906 1.1962 9 6 2.1519 0.0071 2.4009 10 6 1.8194 1.3617 2.4595 11 6 1.9451 2.0645 3.6412 12 6 2.4004 1.4284 4.7870 13 7 2.5214 2.1352 5.9762 14 6 2.7458 0.0565 4.7366 15 6 3.2148 -0.6013 5.8926 16 1 3.7745 -0.0534 6.6361 17 6 2.9597 -1.9648 6.0734 18 7 3.6643 -2.6539 6.9349 19 14 1.6137 -2.8023 5.0853 20 1 2.2071 -3.4433 3.8843 21 1 0.9547 -3.8360 5.9234 22 1 0.6092 -1.7935 4.6627 23 6 2.6117 -0.6467 3.5258 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.7517 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.0720 -0.5387 -0.3517 30 1 3.4814 0.5769 -3.2229 31 1 5.0750 0.7292 -2.3067 32 1 5.2582 -1.7988 -2.2062 33 1 3.6647 -1.9510 -3.1219 34 1 2.2491 -1.6317 1.1527 35 1 1.4601 1.8638 1.5735 36 1 1.6844 3.1121 3.6746 37 1 2.8433 1.6889 6.7750 38 1 2.2840 3.0751 6.0080 39 1 3.4877 -3.5994 7.0601 40 1 2.8676 -1.6949 3.4768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127406401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = 35.287470 kcal Electronic energy + Delta-G solvation = -19376.135845 eV Core-core repulsion = 16576.448537 eV Total energy + Delta-G solvation = -2799.687308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.64823 -37.63571 -35.75025 -33.36331 -32.93058 -30.20115 -30.15137 -27.35855 -26.02957 -24.67418 -22.42133 -21.81063 -21.15385 -20.28906 -19.43602 -17.21780 -16.52558 -15.92157 -15.52598 -15.15004 -14.76138 -14.51660 -14.37694 -13.17171 -13.02198 -12.91782 -12.63302 -12.50423 -12.14787 -11.99665 -11.73822 -11.58791 -11.55106 -11.11805 -11.09643 -10.83341 -10.68860 -10.48570 -10.17291 -9.94555 -9.82791 -9.71054 -9.46238 -8.98440 -7.90376 -7.46075 -6.77574 -5.75838 -4.16958 2.79979 3.06113 3.22904 3.40171 3.46847 3.80165 4.14027 4.26326 4.63473 4.72612 4.90062 4.95755 5.27435 5.31579 5.36979 5.54980 5.59645 5.64135 5.67548 5.82084 5.86657 5.93073 6.02176 6.08318 6.17935 6.28531 6.39740 6.42124 6.55954 6.77686 6.88573 7.22274 7.32704 7.46289 7.58465 7.78532 8.02262 8.34098 8.51225 8.62943 8.73593 8.92834 9.11258 9.17451 10.26003 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.006139 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.137432 B = 4559.837887 C = 5106.608377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.160 3.840 3 H 0.076 0.924 4 C -0.094 4.094 5 C -0.146 4.146 6 C -0.182 4.182 7 C -0.186 4.186 8 N -0.757 5.757 9 C 0.201 3.799 10 C -0.255 4.255 11 C -0.144 4.144 12 C 0.097 3.903 13 N -0.886 5.886 14 C 0.081 3.919 15 C -0.452 4.452 16 H 0.086 0.914 17 C 0.085 3.915 18 N -0.824 5.824 19 Si 0.916 3.084 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.245 1.245 23 C -0.273 4.273 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.386 0.614 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.393 0.607 38 H 0.376 0.624 39 H 0.280 0.720 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 3.064 -13.588 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.132 4.132 5 C -0.164 4.164 6 C -0.219 4.219 7 C -0.223 4.223 8 N -0.390 5.390 9 C 0.102 3.898 10 C -0.279 4.279 11 C -0.169 4.169 12 C -0.005 4.005 13 N -0.428 5.428 14 C 0.075 3.925 15 C -0.482 4.482 16 H 0.103 0.897 17 C -0.132 4.132 18 N -0.450 5.450 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.169 1.169 23 C -0.297 4.297 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.219 0.781 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.221 0.779 38 H 0.201 0.799 39 H 0.090 0.910 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.062 2.940 -13.589 14.237 hybrid contribution -0.372 -0.729 -0.079 0.822 sum -3.434 2.211 -13.668 14.265 Atomic orbital electron populations 1.22309 0.97075 1.01687 1.01650 1.20605 0.92582 0.96976 0.84512 0.90616 1.21469 0.92893 1.00932 0.97927 1.22396 0.95347 1.04054 0.94614 1.23000 1.03151 0.94240 1.01543 1.22940 1.02200 0.94440 1.02723 1.44515 1.75973 1.11383 1.07142 1.17332 0.96492 0.91153 0.84872 1.19649 1.17931 0.92967 0.97387 1.19803 1.07361 0.97371 0.92365 1.17759 1.03784 0.92512 0.86435 1.41862 1.79149 1.11387 1.10433 1.17123 0.92527 0.90129 0.92687 1.19081 1.30786 0.93536 1.04764 0.89654 1.26040 0.95909 0.97059 0.94162 1.69736 1.34668 1.09171 1.31419 0.86231 0.82377 0.78625 0.78409 1.20300 1.22715 1.16850 1.20210 1.18135 0.99172 0.92188 0.93031 0.91821 0.92966 0.91542 0.91200 0.86925 0.89114 0.89094 0.89087 0.89188 0.78062 0.88989 0.89279 0.77881 0.79862 0.90952 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.42 37.16 0.35 -1.91 16 2 C 0.16 2.28 2.25 -67.93 -0.15 2.13 16 3 H 0.08 1.15 6.47 -51.93 -0.34 0.82 16 4 C -0.09 -1.11 5.04 -26.72 -0.13 -1.24 16 5 C -0.15 -1.79 5.61 -90.62 -0.51 -2.30 16 6 C -0.18 -1.95 10.18 -26.73 -0.27 -2.22 16 7 C -0.19 -1.98 10.25 -26.73 -0.27 -2.26 16 8 N -0.76 -13.38 4.68 -52.17 -0.24 -13.63 16 9 C 0.20 4.35 6.63 -83.78 -0.56 3.79 16 10 C -0.26 -5.39 8.84 -39.14 -0.35 -5.73 16 11 C -0.14 -3.11 9.86 -39.46 -0.39 -3.50 16 12 C 0.10 2.26 6.79 -83.23 -0.56 1.69 16 13 N -0.89 -17.74 8.98 32.75 0.29 -17.45 16 14 C 0.08 2.07 5.11 -106.66 -0.54 1.53 16 15 C -0.45 -12.25 8.90 -37.91 -0.34 -12.59 16 16 H 0.09 2.39 7.05 -52.49 -0.37 2.02 16 17 C 0.08 2.27 5.41 -17.33 -0.09 2.18 16 18 N -0.82 -22.55 13.93 55.55 0.77 -21.78 16 19 Si 0.92 21.81 24.52 -169.99 -4.17 17.64 16 20 H -0.28 -6.39 6.72 56.52 0.38 -6.01 16 21 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.25 -6.07 6.86 56.52 0.39 -5.68 16 23 C -0.27 -6.66 6.98 -38.75 -0.27 -6.93 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.98 7.69 -51.93 -0.40 0.58 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 29 H 0.11 1.65 7.69 -51.93 -0.40 1.25 16 30 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.39 6.64 8.61 -40.82 -0.35 6.29 16 35 H 0.09 1.74 6.06 -52.49 -0.32 1.43 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.39 7.96 7.14 -40.82 -0.29 7.66 16 38 H 0.38 6.28 8.83 -40.82 -0.36 5.92 16 39 H 0.28 7.04 8.30 -40.82 -0.34 6.71 16 40 H 0.10 2.42 4.77 -52.48 -0.25 2.17 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -28.23 319.46 -8.66 -36.89 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -6.03 Total: 20.88 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -4.09 Total: -27.37 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.82 Total: -52.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.17 Total: 17.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.23 -8.66 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127406401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.177 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds