Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47574 * 2 1 4 4 C 1.53005 * 109.47151 * 239.99558 * 2 1 3 5 5 C 1.53010 * 109.46907 * 175.00077 * 4 2 1 6 6 C 1.52998 * 117.49615 * 243.62466 * 5 4 2 7 7 C 1.52997 * 117.49749 * 175.00306 * 5 4 2 8 8 N 1.46499 * 109.47133 * 119.99848 * 2 1 3 9 9 C 1.39856 * 120.00164 * 275.00045 * 8 2 1 10 10 C 1.39599 * 119.83417 * 359.97438 * 9 8 2 11 11 C 1.38064 * 120.54696 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.22018 * 359.78593 * 11 10 9 13 13 N 1.38860 * 120.16453 * 180.25163 * 12 11 10 14 14 C 1.41559 * 119.67068 * 0.48969 * 12 11 10 15 15 C 1.41030 * 120.26527 * 179.76214 * 14 12 11 16 16 H 1.08000 * 120.00240 * 329.08341 * 15 14 12 17 17 C 1.39888 * 119.99869 * 149.35478 * 15 14 12 18 18 N 1.30900 * 120.00362 * 162.17419 * 17 15 14 19 19 Si 1.86805 * 119.99959 * 342.17643 * 17 15 14 20 20 H 1.48507 * 109.46982 * 95.38819 * 19 17 15 21 21 H 1.48499 * 109.47035 * 215.38421 * 19 17 15 22 22 H 1.48498 * 109.47204 * 335.38704 * 19 17 15 23 23 C 1.38002 * 119.84393 * 179.97438 * 9 8 2 24 24 H 1.08999 * 109.46831 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47190 * 300.00106 * 1 2 3 26 26 H 1.08997 * 109.47057 * 60.00705 * 1 2 3 27 27 H 1.08994 * 109.47427 * 294.99672 * 4 2 1 28 28 H 1.08996 * 109.46657 * 55.00502 * 4 2 1 29 29 H 1.08993 * 115.55113 * 29.32909 * 5 4 2 30 30 H 1.09003 * 117.50234 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49859 * 145.02203 * 6 5 4 32 32 H 1.09001 * 117.50219 * 214.98088 * 7 5 4 33 33 H 1.09011 * 117.49924 * 359.97438 * 7 5 4 34 34 H 0.97000 * 120.00437 * 95.00219 * 8 2 1 35 35 H 1.07996 * 119.73051 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.88723 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00056 * 180.23549 * 13 12 11 38 38 H 0.96995 * 120.00090 * 0.24521 * 13 12 11 39 39 H 0.97000 * 120.00578 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.11368 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 6 4.1698 0.1512 -2.4928 7 6 4.2803 -1.3736 -2.4321 8 7 2.0183 -0.6906 1.1962 9 6 2.1519 0.0071 2.4009 10 6 1.8194 1.3617 2.4595 11 6 1.9451 2.0645 3.6412 12 6 2.4004 1.4284 4.7870 13 7 2.5214 2.1352 5.9762 14 6 2.7458 0.0565 4.7366 15 6 3.2148 -0.6013 5.8926 16 1 3.7745 -0.0534 6.6361 17 6 2.9597 -1.9648 6.0734 18 7 3.6643 -2.6539 6.9349 19 14 1.6137 -2.8023 5.0853 20 1 2.2071 -3.4433 3.8843 21 1 0.9547 -3.8360 5.9234 22 1 0.6092 -1.7935 4.6627 23 6 2.6117 -0.6467 3.5258 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.7517 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1369 29 1 4.0720 -0.5387 -0.3517 30 1 3.4814 0.5769 -3.2229 31 1 5.0750 0.7292 -2.3067 32 1 5.2582 -1.7988 -2.2062 33 1 3.6647 -1.9510 -3.1219 34 1 2.2491 -1.6317 1.1527 35 1 1.4601 1.8638 1.5735 36 1 1.6844 3.1121 3.6746 37 1 2.8433 1.6889 6.7750 38 1 2.2840 3.0751 6.0080 39 1 3.4877 -3.5994 7.0601 40 1 2.8676 -1.6949 3.4768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127406401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = 18.271320 kcal Electronic energy + Delta-G solvation = -19376.873721 eV Core-core repulsion = 16576.448537 eV Total energy + Delta-G solvation = -2800.425184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.16432 -38.86813 -37.05497 -35.29616 -34.42614 -32.07024 -31.60384 -28.34800 -27.72978 -26.48166 -23.54805 -23.21053 -22.46012 -21.44729 -20.96824 -19.05553 -18.12931 -17.58491 -16.92927 -16.58235 -16.26843 -15.94617 -15.41131 -14.97706 -14.63594 -14.33197 -14.01401 -13.89880 -13.60177 -13.46389 -13.21314 -13.10736 -12.72990 -12.52423 -12.35780 -12.28892 -12.13115 -12.00083 -11.70672 -11.50800 -11.27421 -10.99740 -10.88728 -10.70457 -9.45443 -9.33828 -8.76938 -7.45959 -6.14132 0.94072 1.22096 1.29053 1.53550 1.56243 2.20299 2.76499 2.86225 2.99141 3.69748 3.70877 3.74255 4.00117 4.10567 4.28692 4.32813 4.44202 4.56254 4.68457 4.76171 4.80025 4.87579 4.90265 4.95930 5.00360 5.08155 5.14768 5.18762 5.29132 5.42481 5.44920 5.47266 5.52734 5.72219 5.82570 6.02411 6.23302 6.36291 6.69823 6.92288 6.99704 7.18066 7.33521 7.59661 8.32090 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.006139 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.137432 B = 4559.837887 C = 5106.608377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 H 0.070 0.930 4 C -0.083 4.083 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.180 4.180 8 N -0.752 5.752 9 C 0.197 3.803 10 C -0.243 4.243 11 C -0.144 4.144 12 C 0.081 3.919 13 N -0.878 5.878 14 C 0.050 3.950 15 C -0.475 4.475 16 H 0.060 0.940 17 C 0.047 3.953 18 N -0.866 5.866 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.290 1.290 22 H -0.260 1.260 23 C -0.283 4.283 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.388 0.612 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.390 0.610 38 H 0.393 0.607 39 H 0.286 0.714 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 4.019 -16.861 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.051 3.949 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.183 4.183 6 C -0.212 4.212 7 C -0.217 4.217 8 N -0.384 5.384 9 C 0.095 3.905 10 C -0.267 4.267 11 C -0.168 4.168 12 C -0.022 4.022 13 N -0.422 5.422 14 C 0.045 3.955 15 C -0.506 4.506 16 H 0.078 0.922 17 C -0.164 4.164 18 N -0.494 5.494 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.218 1.218 22 H -0.184 1.184 23 C -0.308 4.308 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.221 0.779 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.218 0.782 38 H 0.222 0.778 39 H 0.096 0.904 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.572 3.913 -16.892 17.932 hybrid contribution 0.094 -0.838 0.753 1.131 sum -4.477 3.075 -16.139 17.028 Atomic orbital electron populations 1.22254 0.95965 1.01950 1.02061 1.20831 0.93290 0.96666 0.84090 0.91169 1.21393 0.92331 1.01043 0.97322 1.22286 0.95743 1.06366 0.93946 1.23087 1.03161 0.94310 1.00651 1.23009 1.02069 0.94773 1.01800 1.44649 1.75317 1.11511 1.06963 1.17419 0.95759 0.91701 0.85578 1.20062 1.15728 0.92674 0.98210 1.20201 1.05976 0.98906 0.91725 1.17972 1.04061 0.92104 0.88051 1.41777 1.78752 1.12163 1.09479 1.17299 0.93977 0.91612 0.92617 1.19084 1.32154 0.94051 1.05350 0.92191 1.26608 0.97301 0.97462 0.95054 1.69772 1.36399 1.09765 1.33493 0.85414 0.79892 0.77517 0.77650 1.19430 1.21756 1.18423 1.20297 1.18533 0.98890 0.93052 0.92896 0.93940 0.89987 0.91164 0.88675 0.89975 0.87358 0.89352 0.89344 0.87642 0.77903 0.86234 0.86185 0.78248 0.77841 0.90401 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.42 71.98 0.68 -3.14 16 2 C 0.16 3.99 2.25 44.99 0.10 4.09 16 3 H 0.07 1.89 6.47 -2.39 -0.02 1.88 16 4 C -0.08 -1.66 5.04 30.60 0.15 -1.51 16 5 C -0.17 -3.69 5.61 -10.79 -0.06 -3.75 16 6 C -0.18 -3.24 10.18 30.59 0.31 -2.93 16 7 C -0.18 -3.36 10.25 30.59 0.31 -3.05 16 8 N -0.75 -25.28 4.68 -318.97 -1.49 -26.78 16 9 C 0.20 8.27 6.63 38.13 0.25 8.53 16 10 C -0.24 -9.61 8.84 22.56 0.20 -9.41 16 11 C -0.14 -5.86 9.86 22.35 0.22 -5.64 16 12 C 0.08 3.73 6.79 38.97 0.26 4.00 16 13 N -0.88 -34.95 8.98 -50.31 -0.45 -35.41 16 14 C 0.05 2.63 5.11 -21.18 -0.11 2.52 16 15 C -0.48 -26.91 8.90 23.35 0.21 -26.70 16 16 H 0.06 3.57 7.05 -2.91 -0.02 3.55 16 17 C 0.05 2.64 5.41 85.23 0.46 3.10 16 18 N -0.87 -49.33 13.93 21.82 0.30 -49.02 16 19 Si 0.97 46.10 24.52 68.60 1.68 47.78 16 20 H -0.27 -12.19 6.72 99.48 0.67 -11.53 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.26 -12.83 6.86 99.48 0.68 -12.15 16 23 C -0.28 -13.89 6.98 22.81 0.16 -13.73 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.17 7.69 -2.39 -0.02 1.15 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.47 7.87 -2.39 -0.02 1.45 16 29 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 30 H 0.11 1.63 8.03 -2.39 -0.02 1.61 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.39 12.83 8.61 -92.71 -0.80 12.03 16 35 H 0.12 4.07 6.06 -2.91 -0.02 4.05 16 36 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 37 H 0.39 16.20 7.14 -92.71 -0.66 15.53 16 38 H 0.39 12.60 8.83 -92.71 -0.82 11.78 16 39 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 40 H 0.09 4.37 4.77 -2.91 -0.01 4.35 16 Total: -1.00 -62.22 319.46 1.92 -60.30 By element: Atomic # 1 Polarization: 52.01 SS G_CDS: -1.27 Total: 50.73 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 3.15 Total: -47.61 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -1.64 Total: -111.20 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.68 Total: 47.78 kcal Total: -62.22 1.92 -60.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127406401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.572 kcal (2) G-P(sol) polarization free energy of solvation -62.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds