Wall clock time and date at job start Mon Mar 30 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.89956 * 2 1 4 4 C 1.54899 * 110.99225 * 123.86655 * 2 1 3 5 5 N 1.47853 * 104.79573 * 155.16131 * 4 2 1 6 6 C 1.39846 * 111.00352 * 213.63435 * 5 4 2 7 7 C 1.39606 * 119.83598 * 54.59707 * 6 5 4 8 8 C 1.38064 * 120.54810 * 180.02562 * 7 6 5 9 9 C 1.38734 * 120.21962 * 359.97438 * 8 7 6 10 10 N 1.38857 * 120.16172 * 180.02562 * 9 8 7 11 11 C 1.41565 * 119.67575 * 359.97438 * 9 8 7 12 12 C 1.41022 * 120.26949 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99706 * 28.71358 * 12 11 9 14 14 C 1.39884 * 120.00109 * 208.71405 * 12 11 9 15 15 N 1.30902 * 120.00332 * 12.65452 * 14 12 11 16 16 Si 1.86804 * 120.00000 * 192.64920 * 14 12 11 17 17 H 1.48503 * 109.46675 * 90.00200 * 16 14 12 18 18 H 1.48503 * 109.47285 * 210.00106 * 16 14 12 19 19 H 1.48501 * 109.47087 * 330.00541 * 16 14 12 20 20 C 1.38004 * 119.84260 * 234.58040 * 6 5 4 21 21 C 1.47440 * 108.56440 * 335.90689 * 5 4 2 22 22 C 1.54318 * 107.23759 * 0.98679 * 21 5 4 23 23 H 1.08994 * 110.85269 * 263.83254 * 22 21 5 24 24 C 1.52996 * 110.70533 * 140.66625 * 22 21 5 25 25 H 1.08995 * 109.47274 * 297.58029 * 1 2 3 26 26 H 1.08996 * 109.47558 * 57.58706 * 1 2 3 27 27 H 1.09001 * 109.46949 * 177.58780 * 1 2 3 28 28 H 1.08997 * 110.37487 * 36.33593 * 4 2 1 29 29 H 1.08996 * 110.37778 * 273.99235 * 4 2 1 30 30 H 1.07994 * 119.72583 * 0.02562 * 7 6 5 31 31 H 1.08000 * 119.88669 * 179.70200 * 8 7 6 32 32 H 0.96998 * 120.00706 * 5.70368 * 10 9 8 33 33 H 0.97002 * 119.99872 * 185.71191 * 10 9 8 34 34 H 0.96997 * 120.00096 * 174.98594 * 15 14 12 35 35 H 1.07999 * 120.11286 * 0.02562 * 20 6 5 36 36 H 1.09007 * 109.88775 * 120.39363 * 21 5 4 37 37 H 1.08998 * 109.88733 * 241.57983 * 21 5 4 38 38 H 1.09004 * 109.47394 * 306.40124 * 24 22 21 39 39 H 1.08999 * 109.46988 * 66.40341 * 24 22 21 40 40 H 1.08997 * 109.46909 * 186.40225 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0183 0.0000 4 6 2.0849 -0.8059 1.2008 5 7 3.4314 -1.2420 0.7730 6 6 3.7455 -2.4956 1.3073 7 6 2.8843 -3.5746 1.0999 8 6 3.1798 -4.8185 1.6210 9 6 4.3396 -5.0093 2.3580 10 7 4.6358 -6.2609 2.8812 11 6 5.2201 -3.9219 2.5732 12 6 6.4022 -4.1016 3.3209 13 1 6.8873 -5.0662 3.3404 14 6 6.9464 -3.0304 4.0372 15 7 6.2437 -1.9413 4.2206 16 14 8.6758 -3.1541 4.7324 17 1 9.6496 -2.6543 3.7287 18 1 8.7729 -2.3346 5.9670 19 1 8.9799 -4.5716 5.0539 20 6 4.9055 -2.6601 2.0366 21 6 3.4692 -1.2710 -0.7006 22 6 2.0857 -0.8071 -1.2028 23 1 1.4459 -1.6618 -1.4220 24 6 2.2299 0.0884 -2.4349 25 1 -0.3633 0.4758 0.9108 26 1 -0.3634 0.5508 -0.8675 27 1 -0.3633 -1.0268 -0.0433 28 1 1.4524 -1.6704 1.4025 29 1 2.1545 -0.1712 2.0842 30 1 1.9795 -3.4352 0.5270 31 1 2.5036 -5.6447 1.4581 32 1 4.0760 -7.0226 2.6635 33 1 5.4026 -6.3737 3.4645 34 1 6.5916 -1.2277 4.7780 35 1 5.5692 -1.8231 2.1951 36 1 4.2421 -0.5942 -1.0651 37 1 3.6682 -2.2853 -1.0465 38 1 2.9160 0.9056 -2.2119 39 1 2.6211 -0.4978 -3.2664 40 1 1.2553 0.4955 -2.7041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127461237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:45 Heat of formation + Delta-G solvation = -0.768879 kcal Electronic energy + Delta-G solvation = -19695.862951 eV Core-core repulsion = 16894.612123 eV Total energy + Delta-G solvation = -2801.250829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92177 -39.04019 -35.70240 -35.32642 -33.02367 -32.09931 -31.36896 -28.82099 -27.11100 -26.87524 -25.40491 -23.08371 -22.31603 -21.10359 -20.76061 -18.91217 -17.78334 -17.27945 -16.81976 -16.64009 -16.22730 -15.16469 -14.89600 -14.75551 -14.46406 -14.22434 -14.05138 -13.87945 -13.50969 -13.26286 -13.17829 -13.01282 -12.88137 -12.78052 -12.51182 -12.29966 -12.09988 -11.75896 -11.66445 -11.52249 -11.35235 -11.16029 -10.99509 -10.65948 -9.22937 -9.11938 -8.46952 -7.97592 -6.06563 1.02437 1.27852 1.40970 1.52102 1.53663 2.26801 2.84352 3.27061 3.62694 3.64438 3.77760 3.84513 3.97753 4.37929 4.47613 4.51816 4.57869 4.64264 4.68453 4.73615 4.78382 4.88361 5.02092 5.05855 5.15849 5.18461 5.19517 5.24933 5.33489 5.38325 5.43278 5.56349 5.70413 5.80547 5.94956 6.17341 6.22975 6.33063 6.47857 6.91844 7.01314 7.09634 7.32334 7.54202 8.52884 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.005746 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.016920 B = 4871.998057 C = 5497.435958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 H 0.084 0.916 4 C 0.050 3.950 5 N -0.505 5.505 6 C 0.041 3.959 7 C -0.207 4.207 8 C -0.183 4.183 9 C 0.111 3.889 10 N -0.872 5.872 11 C 0.028 3.972 12 C -0.492 4.492 13 H 0.077 0.923 14 C 0.029 3.971 15 N -0.840 5.840 16 Si 0.979 3.021 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.256 1.256 20 C -0.130 4.130 21 C 0.052 3.948 22 C -0.100 4.100 23 H 0.074 0.926 24 C -0.132 4.132 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.394 0.606 33 H 0.394 0.606 34 H 0.279 0.721 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 1.855 -7.727 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.076 4.076 5 N -0.226 5.226 6 C -0.054 4.054 7 C -0.228 4.228 8 C -0.207 4.207 9 C 0.008 3.992 10 N -0.415 5.415 11 C 0.023 3.977 12 C -0.523 4.523 13 H 0.095 0.905 14 C -0.183 4.183 15 N -0.468 5.468 16 Si 0.801 3.199 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.179 1.179 20 C -0.152 4.152 21 C -0.074 4.074 22 C -0.119 4.119 23 H 0.092 0.908 24 C -0.189 4.189 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.222 0.778 33 H 0.222 0.778 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.067 2.514 -7.498 10.606 hybrid contribution 0.430 -0.916 0.590 1.172 sum -6.637 1.598 -6.908 9.712 Atomic orbital electron populations 1.21669 0.92693 1.02023 1.02708 1.22332 0.96766 0.98895 0.92748 0.89805 1.23166 0.87859 0.98116 0.98505 1.61044 1.28041 1.25382 1.08101 1.18628 0.96585 0.88582 1.01617 1.20755 1.00912 0.93475 1.07691 1.20177 0.97512 0.97516 1.05526 1.18171 0.94095 0.87763 0.99129 1.41796 1.35569 1.06502 1.57595 1.17533 0.93847 0.91226 0.95118 1.19370 1.08041 0.97362 1.27575 0.90526 1.26613 1.02206 0.93840 0.95645 1.69933 1.38518 1.06837 1.31463 0.85261 0.77547 0.79415 0.77694 1.19581 1.19976 1.17933 1.20831 0.97337 0.97532 0.99473 1.22955 0.98183 0.99795 0.86508 1.22393 0.94943 0.98585 0.95981 0.90770 1.21685 1.02555 0.98886 0.95813 0.92120 0.90558 0.92994 0.94005 0.92377 0.87930 0.86760 0.77821 0.77790 0.91059 0.88602 0.91342 0.94329 0.92555 0.92173 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.29 71.98 0.67 -2.08 16 2 C -0.09 -2.35 3.08 -9.41 -0.03 -2.37 16 3 H 0.08 2.17 8.05 -2.38 -0.02 2.16 16 4 C 0.05 1.81 5.98 86.77 0.52 2.33 16 5 N -0.50 -21.42 5.15 -685.19 -3.53 -24.95 16 6 C 0.04 1.99 4.58 38.14 0.17 2.17 16 7 C -0.21 -9.27 8.06 22.56 0.18 -9.08 16 8 C -0.18 -8.13 9.87 22.35 0.22 -7.91 16 9 C 0.11 5.34 6.79 38.97 0.26 5.60 16 10 N -0.87 -34.26 8.97 -50.31 -0.45 -34.71 16 11 C 0.03 1.54 5.56 -21.18 -0.12 1.42 16 12 C -0.49 -26.52 8.39 23.35 0.20 -26.32 16 13 H 0.08 3.88 6.86 -2.91 -0.02 3.86 16 14 C 0.03 1.52 5.21 85.23 0.44 1.96 16 15 N -0.84 -46.63 10.93 21.82 0.24 -46.39 16 16 Si 0.98 39.99 29.58 68.60 2.03 42.02 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 20 C -0.13 -7.23 8.55 22.81 0.20 -7.03 16 21 C 0.05 1.84 6.22 86.65 0.54 2.38 16 22 C -0.10 -2.63 3.01 -9.61 -0.03 -2.66 16 23 H 0.07 1.93 8.01 -2.39 -0.02 1.91 16 24 C -0.13 -2.66 9.16 71.98 0.66 -2.00 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.10 8.11 -2.39 -0.02 1.08 16 28 H 0.04 1.56 6.24 -2.39 -0.01 1.54 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.10 4.13 7.36 -2.91 -0.02 4.11 16 31 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.39 12.54 8.84 -92.71 -0.82 11.72 16 33 H 0.39 15.34 7.16 -92.71 -0.66 14.67 16 34 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 35 H 0.10 5.83 6.28 -2.91 -0.02 5.81 16 36 H 0.07 2.36 7.77 -2.38 -0.02 2.34 16 37 H 0.04 1.46 7.23 -2.39 -0.02 1.44 16 38 H 0.06 1.16 8.06 -2.38 -0.02 1.14 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -62.42 316.74 1.73 -60.69 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -0.44 Total: 46.94 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 3.89 Total: -43.60 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.74 Total: -106.05 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -62.42 1.73 -60.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127461237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.917 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds