Wall clock time and date at job start Mon Mar 30 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 110.29020 * 2 1 4 4 C 1.54375 * 110.32647 * 237.86696 * 2 1 3 5 5 N 1.48565 * 104.60032 * 217.25439 * 4 2 1 6 6 C 1.39843 * 111.00312 * 159.04144 * 5 4 2 7 7 C 1.39605 * 119.84083 * 30.70343 * 6 5 4 8 8 C 1.38058 * 120.55085 * 179.71904 * 7 6 5 9 9 C 1.38736 * 120.22008 * 0.55777 * 8 7 6 10 10 N 1.38860 * 120.16548 * 179.74387 * 9 8 7 11 11 C 1.41562 * 119.67082 * 359.71787 * 9 8 7 12 12 C 1.41035 * 120.26553 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99895 * 330.88844 * 12 11 9 14 14 C 1.39888 * 119.99586 * 150.89404 * 12 11 9 15 15 N 1.30902 * 119.99397 * 161.87506 * 14 12 11 16 16 Si 1.86791 * 120.00079 * 341.86750 * 14 12 11 17 17 H 1.48499 * 109.47153 * 90.60608 * 16 14 12 18 18 H 1.48504 * 109.47121 * 210.59921 * 16 14 12 19 19 H 1.48497 * 109.47294 * 330.59941 * 16 14 12 20 20 C 1.38002 * 119.84130 * 210.97794 * 6 5 4 21 21 C 1.48557 * 104.21904 * 39.48440 * 5 4 2 22 22 C 1.54264 * 110.32363 * 122.12393 * 2 1 3 23 23 H 1.09007 * 110.31913 * 0.02562 * 22 2 1 24 24 C 1.52994 * 110.32933 * 237.79442 * 22 2 1 25 25 H 1.09001 * 109.47338 * 179.29719 * 1 2 3 26 26 H 1.09005 * 109.47116 * 59.29953 * 1 2 3 27 27 H 1.09002 * 109.47556 * 299.30510 * 1 2 3 28 28 H 1.08997 * 110.41454 * 336.03552 * 4 2 1 29 29 H 1.09009 * 110.41211 * 98.47796 * 4 2 1 30 30 H 1.07999 * 119.72442 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.88950 * 180.27715 * 8 7 6 32 32 H 0.97001 * 120.00676 * 185.36660 * 10 9 8 33 33 H 0.97006 * 119.99868 * 5.37298 * 10 9 8 34 34 H 0.97004 * 119.99417 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.11609 * 0.02562 * 20 6 5 36 36 H 1.08999 * 110.41374 * 79.29469 * 21 5 4 37 37 H 1.09001 * 110.41010 * 201.74470 * 21 5 4 38 38 H 1.09003 * 109.47210 * 59.99166 * 24 22 2 39 39 H 1.08997 * 109.47621 * 179.97438 * 24 22 2 40 40 H 1.09010 * 109.46845 * 299.99842 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0662 -0.7700 -1.2259 5 7 3.2693 -1.4823 -0.7237 6 6 3.5906 -2.5657 -1.5475 7 6 3.2993 -2.5114 -2.9118 8 6 3.6153 -3.5702 -3.7395 9 6 4.2171 -4.7072 -3.2200 10 7 4.5296 -5.7736 -4.0527 11 6 4.5114 -4.7746 -1.8370 12 6 5.1226 -5.9246 -1.2956 13 1 4.9564 -6.8896 -1.7510 14 6 5.9438 -5.8151 -0.1684 15 7 6.2222 -6.8774 0.5441 16 14 6.6434 -4.1534 0.3196 17 1 5.7099 -3.4795 1.2575 18 1 7.9583 -4.3452 0.9827 19 1 6.8183 -3.3144 -0.8931 20 6 4.1889 -3.6857 -1.0070 21 6 2.8805 -1.9429 0.6341 22 6 2.0657 -0.7692 1.2251 23 1 1.2386 -1.1472 1.8262 24 6 2.9673 0.1350 2.0678 25 1 -0.3634 -1.0276 -0.0126 26 1 -0.3633 0.5247 -0.8837 27 1 -0.3634 0.5030 0.8961 28 1 1.3229 -1.4834 -1.5817 29 1 2.3395 -0.0761 -2.0209 30 1 2.8265 -1.6322 -3.3238 31 1 3.3892 -3.5150 -4.7941 32 1 4.8782 -6.5969 -3.6764 33 1 4.3994 -5.6952 -5.0108 34 1 6.7914 -6.8015 1.3259 35 1 4.4084 -3.7261 0.0497 36 1 2.2646 -2.8398 0.5694 37 1 3.7669 -2.1320 1.2396 38 1 2.3972 0.9982 2.4113 39 1 3.3374 -0.4216 2.9289 40 1 3.8096 0.4728 1.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127461459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:50 Heat of formation + Delta-G solvation = 15.891404 kcal Electronic energy + Delta-G solvation = -19966.112933 eV Core-core repulsion = 17165.584548 eV Total energy + Delta-G solvation = -2800.528385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.67359 -37.58362 -34.39116 -33.45651 -31.59441 -31.23649 -30.25908 -27.26290 -26.45573 -24.73034 -24.05564 -21.70287 -21.34008 -19.42834 -19.14815 -17.29683 -16.41887 -15.72868 -15.35710 -15.28441 -14.58691 -14.02277 -13.51065 -13.46883 -13.24107 -12.93775 -12.86215 -12.59337 -12.26416 -12.09094 -11.77376 -11.62123 -11.52707 -11.34039 -10.90381 -10.70189 -10.51407 -10.43388 -10.36187 -10.28961 -9.91692 -9.67414 -9.42498 -9.02698 -8.16089 -7.57645 -6.84012 -6.14929 -4.23665 2.70042 2.82503 3.20866 3.29954 3.45026 4.09693 4.47679 4.67911 4.75512 4.81080 5.08577 5.18426 5.41586 5.49829 5.54245 5.55840 5.62951 5.76749 5.82428 5.96136 6.03383 6.08242 6.10418 6.20918 6.24259 6.30494 6.35877 6.41134 6.45911 6.67991 6.71911 6.94562 7.21010 7.29134 7.39645 7.55214 7.85213 8.03786 8.19930 8.41858 8.51609 8.82367 8.98231 9.04003 10.18991 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.007836 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.930810 B = 3572.528506 C = 4632.964424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.077 0.923 4 C 0.044 3.956 5 N -0.462 5.462 6 C 0.085 3.915 7 C -0.217 4.217 8 C -0.160 4.160 9 C 0.119 3.881 10 N -0.883 5.883 11 C 0.065 3.935 12 C -0.450 4.450 13 H 0.086 0.914 14 C 0.085 3.915 15 N -0.820 5.820 16 Si 0.914 3.086 17 H -0.271 1.271 18 H -0.297 1.297 19 H -0.247 1.247 20 C -0.241 4.241 21 C 0.039 3.961 22 C -0.095 4.095 23 H 0.074 0.926 24 C -0.139 4.139 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.394 0.606 33 H 0.378 0.622 34 H 0.282 0.718 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 10.112 0.033 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.083 4.083 5 N -0.178 5.178 6 C -0.013 4.013 7 C -0.240 4.240 8 C -0.185 4.185 9 C 0.017 3.983 10 N -0.424 5.424 11 C 0.059 3.941 12 C -0.480 4.480 13 H 0.104 0.896 14 C -0.132 4.132 15 N -0.445 5.445 16 Si 0.742 3.258 17 H -0.197 1.197 18 H -0.225 1.225 19 H -0.171 1.171 20 C -0.264 4.264 21 C -0.088 4.088 22 C -0.114 4.114 23 H 0.092 0.908 24 C -0.196 4.196 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.204 0.796 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.479 10.360 0.333 12.224 hybrid contribution -0.055 -0.182 0.024 0.192 sum -6.535 10.178 0.357 12.100 Atomic orbital electron populations 1.21842 0.94950 1.01829 1.01356 1.22010 0.95153 0.99632 0.94657 0.90473 1.23202 0.91245 0.97226 0.96664 1.62588 1.31010 1.22045 1.02147 1.18536 1.01092 0.89667 0.91996 1.19925 1.12417 0.99430 0.92181 1.19893 1.06278 0.94689 0.97594 1.17851 1.01233 0.88986 0.90202 1.41933 1.77227 1.16303 1.06956 1.17247 0.94222 0.93283 0.89354 1.19056 1.24944 0.94611 1.09358 0.89616 1.26040 0.94825 0.98423 0.93930 1.69733 1.29794 1.31520 1.13459 0.86312 0.76870 0.82303 0.80345 1.19713 1.22516 1.17067 1.20628 1.11795 0.95453 0.98492 1.23303 0.98948 0.96043 0.90467 1.22050 0.97696 0.95672 0.95988 0.90783 1.21802 0.99697 0.98777 0.99364 0.92602 0.92703 0.92752 0.92974 0.90590 0.88732 0.88935 0.77703 0.79614 0.90784 0.87522 0.92876 0.90294 0.93130 0.92906 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.91 37.15 0.33 -1.21 16 2 C -0.10 -1.24 3.30 -89.24 -0.29 -1.54 16 3 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 4 C 0.04 0.69 4.68 -2.18 -0.01 0.68 16 5 N -0.46 -9.01 5.49 -166.57 -0.91 -9.92 16 6 C 0.08 1.90 5.65 -83.78 -0.47 1.43 16 7 C -0.22 -4.66 8.89 -39.14 -0.35 -5.01 16 8 C -0.16 -3.44 9.87 -39.46 -0.39 -3.83 16 9 C 0.12 2.76 6.79 -83.23 -0.56 2.19 16 10 N -0.88 -17.32 8.97 32.75 0.29 -17.03 16 11 C 0.06 1.65 5.14 -106.65 -0.55 1.10 16 12 C -0.45 -12.09 8.98 -37.91 -0.34 -12.44 16 13 H 0.09 2.35 6.91 -52.49 -0.36 1.99 16 14 C 0.08 2.27 5.41 -17.33 -0.09 2.17 16 15 N -0.82 -22.20 13.93 55.55 0.77 -21.42 16 16 Si 0.91 22.00 24.55 -169.99 -4.17 17.83 16 17 H -0.27 -6.33 6.33 56.52 0.36 -5.97 16 18 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.25 -6.26 7.03 56.52 0.40 -5.86 16 20 C -0.24 -5.96 6.16 -38.75 -0.24 -6.20 16 21 C 0.04 0.70 4.75 -2.06 -0.01 0.69 16 22 C -0.10 -1.32 3.31 -89.11 -0.30 -1.62 16 23 H 0.07 0.94 7.71 -51.93 -0.40 0.54 16 24 C -0.14 -1.75 8.91 37.15 0.33 -1.42 16 25 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.86 7.37 -51.93 -0.38 0.48 16 29 H 0.08 1.15 7.65 -51.92 -0.40 0.76 16 30 H 0.09 1.82 6.64 -52.49 -0.35 1.47 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.39 7.79 7.09 -40.82 -0.29 7.50 16 33 H 0.38 6.15 8.84 -40.82 -0.36 5.79 16 34 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 35 H 0.11 2.68 3.15 -52.49 -0.17 2.52 16 36 H 0.05 1.01 7.73 -51.93 -0.40 0.61 16 37 H 0.08 1.52 7.20 -51.93 -0.37 1.14 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -28.38 307.36 -8.36 -36.73 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.02 Total: 14.16 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -2.94 Total: -24.98 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.15 Total: -48.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.17 Total: 17.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.38 -8.36 -36.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127461459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.626 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds