Wall clock time and date at job start Mon Mar 30 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 110.29020 * 2 1 4 4 C 1.54375 * 110.32647 * 237.86696 * 2 1 3 5 5 N 1.48565 * 104.60032 * 217.25439 * 4 2 1 6 6 C 1.39843 * 111.00312 * 159.04144 * 5 4 2 7 7 C 1.39605 * 119.84083 * 30.70343 * 6 5 4 8 8 C 1.38058 * 120.55085 * 179.71904 * 7 6 5 9 9 C 1.38736 * 120.22008 * 0.55777 * 8 7 6 10 10 N 1.38860 * 120.16548 * 179.74387 * 9 8 7 11 11 C 1.41562 * 119.67082 * 359.71787 * 9 8 7 12 12 C 1.41035 * 120.26553 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99895 * 330.88844 * 12 11 9 14 14 C 1.39888 * 119.99586 * 150.89404 * 12 11 9 15 15 N 1.30902 * 119.99397 * 161.87506 * 14 12 11 16 16 Si 1.86791 * 120.00079 * 341.86750 * 14 12 11 17 17 H 1.48499 * 109.47153 * 90.60608 * 16 14 12 18 18 H 1.48504 * 109.47121 * 210.59921 * 16 14 12 19 19 H 1.48497 * 109.47294 * 330.59941 * 16 14 12 20 20 C 1.38002 * 119.84130 * 210.97794 * 6 5 4 21 21 C 1.48557 * 104.21904 * 39.48440 * 5 4 2 22 22 C 1.54264 * 110.32363 * 122.12393 * 2 1 3 23 23 H 1.09007 * 110.31913 * 0.02562 * 22 2 1 24 24 C 1.52994 * 110.32933 * 237.79442 * 22 2 1 25 25 H 1.09001 * 109.47338 * 179.29719 * 1 2 3 26 26 H 1.09005 * 109.47116 * 59.29953 * 1 2 3 27 27 H 1.09002 * 109.47556 * 299.30510 * 1 2 3 28 28 H 1.08997 * 110.41454 * 336.03552 * 4 2 1 29 29 H 1.09009 * 110.41211 * 98.47796 * 4 2 1 30 30 H 1.07999 * 119.72442 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.88950 * 180.27715 * 8 7 6 32 32 H 0.97001 * 120.00676 * 185.36660 * 10 9 8 33 33 H 0.97006 * 119.99868 * 5.37298 * 10 9 8 34 34 H 0.97004 * 119.99417 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.11609 * 0.02562 * 20 6 5 36 36 H 1.08999 * 110.41374 * 79.29469 * 21 5 4 37 37 H 1.09001 * 110.41010 * 201.74470 * 21 5 4 38 38 H 1.09003 * 109.47210 * 59.99166 * 24 22 2 39 39 H 1.08997 * 109.47621 * 179.97438 * 24 22 2 40 40 H 1.09010 * 109.46845 * 299.99842 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0662 -0.7700 -1.2259 5 7 3.2693 -1.4823 -0.7237 6 6 3.5906 -2.5657 -1.5475 7 6 3.2993 -2.5114 -2.9118 8 6 3.6153 -3.5702 -3.7395 9 6 4.2171 -4.7072 -3.2200 10 7 4.5296 -5.7736 -4.0527 11 6 4.5114 -4.7746 -1.8370 12 6 5.1226 -5.9246 -1.2956 13 1 4.9564 -6.8896 -1.7510 14 6 5.9438 -5.8151 -0.1684 15 7 6.2222 -6.8774 0.5441 16 14 6.6434 -4.1534 0.3196 17 1 5.7099 -3.4795 1.2575 18 1 7.9583 -4.3452 0.9827 19 1 6.8183 -3.3144 -0.8931 20 6 4.1889 -3.6857 -1.0070 21 6 2.8805 -1.9429 0.6341 22 6 2.0657 -0.7692 1.2251 23 1 1.2386 -1.1472 1.8262 24 6 2.9673 0.1350 2.0678 25 1 -0.3634 -1.0276 -0.0126 26 1 -0.3633 0.5247 -0.8837 27 1 -0.3634 0.5030 0.8961 28 1 1.3229 -1.4834 -1.5817 29 1 2.3395 -0.0761 -2.0209 30 1 2.8265 -1.6322 -3.3238 31 1 3.3892 -3.5150 -4.7941 32 1 4.8782 -6.5969 -3.6764 33 1 4.3994 -5.6952 -5.0108 34 1 6.7914 -6.8015 1.3259 35 1 4.4084 -3.7261 0.0497 36 1 2.2646 -2.8398 0.5694 37 1 3.7669 -2.1320 1.2396 38 1 2.3972 0.9982 2.4113 39 1 3.3374 -0.4216 2.9289 40 1 3.8096 0.4728 1.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127461459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:49 Heat of formation + Delta-G solvation = -2.598049 kcal Electronic energy + Delta-G solvation = -19966.914696 eV Core-core repulsion = 17165.584548 eV Total energy + Delta-G solvation = -2801.330147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13472 -39.20247 -35.89666 -35.36213 -33.12203 -32.55598 -31.88245 -28.82156 -27.81640 -26.42962 -25.42232 -23.38710 -22.68028 -21.05890 -20.45152 -19.15053 -18.16102 -17.40983 -16.89184 -16.60337 -16.42055 -15.40883 -15.13604 -14.78046 -14.71875 -14.55083 -14.16730 -13.88110 -13.79011 -13.53469 -13.39298 -13.08107 -12.89909 -12.73763 -12.61266 -12.43422 -12.08180 -11.79764 -11.60069 -11.46365 -11.42776 -11.32804 -11.18684 -10.92759 -9.73645 -9.45853 -8.83858 -7.88235 -6.21611 0.83478 1.01157 1.25386 1.37791 1.47646 2.13419 2.65096 3.13451 3.56281 3.60082 3.65177 3.66434 3.99849 4.27873 4.32500 4.43363 4.54641 4.59277 4.61038 4.66372 4.73950 4.84256 4.85480 4.86718 4.99843 5.02880 5.16103 5.20067 5.23725 5.28176 5.35984 5.41200 5.44347 5.59098 5.67649 5.78969 6.05412 6.25115 6.31293 6.61791 6.69012 6.88765 7.17430 7.47810 8.24746 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.007836 C = 0.006042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.930810 B = 3572.528506 C = 4632.964424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.091 0.909 4 C 0.041 3.959 5 N -0.473 5.473 6 C 0.072 3.928 7 C -0.204 4.204 8 C -0.160 4.160 9 C 0.110 3.890 10 N -0.873 5.873 11 C 0.033 3.967 12 C -0.472 4.472 13 H 0.066 0.934 14 C 0.053 3.947 15 N -0.858 5.858 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.268 1.268 20 C -0.249 4.249 21 C 0.037 3.963 22 C -0.089 4.089 23 H 0.089 0.911 24 C -0.136 4.136 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.392 0.608 33 H 0.397 0.603 34 H 0.288 0.712 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 13.041 -0.745 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.085 4.085 5 N -0.189 5.189 6 C -0.026 4.026 7 C -0.226 4.226 8 C -0.185 4.185 9 C 0.007 3.993 10 N -0.415 5.415 11 C 0.027 3.973 12 C -0.503 4.503 13 H 0.084 0.916 14 C -0.160 4.160 15 N -0.486 5.486 16 Si 0.788 3.212 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.272 4.272 21 C -0.090 4.090 22 C -0.108 4.108 23 H 0.108 0.892 24 C -0.193 4.193 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.221 0.779 33 H 0.225 0.775 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.140 13.294 -0.464 15.595 hybrid contribution 0.325 -0.967 0.112 1.027 sum -7.815 12.326 -0.352 14.599 Atomic orbital electron populations 1.21814 0.92950 1.01771 1.02972 1.22010 0.96698 0.99526 0.92366 0.89051 1.23337 0.89692 0.97118 0.98388 1.62538 1.33045 1.20900 1.02447 1.18771 1.00808 0.89895 0.93140 1.20382 1.10360 1.00150 0.91677 1.20302 1.05037 0.93741 0.99406 1.18061 1.01128 0.90342 0.89785 1.41857 1.76527 1.15404 1.07719 1.17436 0.95527 0.93376 0.90952 1.19063 1.26491 0.94462 1.10306 0.91620 1.26495 0.95099 1.00313 0.94094 1.69754 1.31674 1.32565 1.14592 0.85596 0.76901 0.79520 0.79211 1.19409 1.21188 1.19213 1.20702 1.12134 0.96340 0.98027 1.23293 0.98378 0.97348 0.90006 1.22079 0.97695 0.94338 0.96705 0.89249 1.21780 0.99305 0.99410 0.98829 0.93492 0.91406 0.90903 0.93528 0.89464 0.85770 0.85483 0.77930 0.77464 0.90194 0.88799 0.94735 0.92452 0.90380 0.93047 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.91 71.98 0.64 -1.79 16 2 C -0.09 -1.96 3.30 -9.90 -0.03 -2.00 16 3 H 0.09 1.85 7.71 -2.39 -0.02 1.83 16 4 C 0.04 1.18 4.68 86.45 0.40 1.59 16 5 N -0.47 -17.85 5.49 -680.90 -3.74 -21.59 16 6 C 0.07 3.19 5.65 38.14 0.22 3.40 16 7 C -0.20 -8.20 8.89 22.56 0.20 -8.00 16 8 C -0.16 -6.47 9.87 22.35 0.22 -6.25 16 9 C 0.11 5.02 6.79 38.97 0.26 5.28 16 10 N -0.87 -33.61 8.97 -50.31 -0.45 -34.06 16 11 C 0.03 1.70 5.14 -21.18 -0.11 1.59 16 12 C -0.47 -26.47 8.98 23.36 0.21 -26.26 16 13 H 0.07 3.81 6.91 -2.91 -0.02 3.79 16 14 C 0.05 2.93 5.41 85.23 0.46 3.39 16 15 N -0.86 -48.36 13.93 21.82 0.30 -48.05 16 16 Si 0.96 46.96 24.55 68.60 1.68 48.65 16 17 H -0.27 -12.74 6.33 99.48 0.63 -12.11 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.27 -13.78 7.03 99.48 0.70 -13.08 16 20 C -0.25 -12.52 6.16 22.81 0.14 -12.38 16 21 C 0.04 1.30 4.75 86.53 0.41 1.72 16 22 C -0.09 -2.27 3.31 -9.82 -0.03 -2.31 16 23 H 0.09 2.02 7.71 -2.38 -0.02 2.00 16 24 C -0.14 -3.09 8.91 71.98 0.64 -2.45 16 25 H 0.05 0.92 8.12 -2.39 -0.02 0.90 16 26 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.41 7.37 -2.39 -0.02 1.39 16 29 H 0.09 2.32 7.65 -2.38 -0.02 2.30 16 30 H 0.12 4.24 6.64 -2.91 -0.02 4.23 16 31 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 32 H 0.39 15.71 7.09 -92.71 -0.66 15.05 16 33 H 0.40 12.13 8.84 -92.70 -0.82 11.31 16 34 H 0.29 14.85 8.30 -92.70 -0.77 14.08 16 35 H 0.09 4.88 3.15 -2.91 -0.01 4.87 16 36 H 0.03 1.33 7.73 -2.39 -0.02 1.31 16 37 H 0.06 2.25 7.20 -2.39 -0.02 2.24 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -62.76 307.36 0.93 -61.83 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.51 Total: 37.70 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 3.64 Total: -44.47 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -3.89 Total: -103.71 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.68 Total: 48.65 kcal Total: -62.76 0.93 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127461459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.231 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds