Wall clock time and date at job start Mon Mar 30 2020 06:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47423 * 2 1 4 4 C 1.53000 * 109.46949 * 120.00180 * 2 1 3 5 5 N 1.46501 * 109.46875 * 294.99529 * 4 2 1 6 6 C 1.39855 * 120.00094 * 179.97438 * 5 4 2 7 7 C 1.39603 * 119.83640 * 359.97438 * 6 5 4 8 8 C 1.38051 * 120.54953 * 179.97438 * 7 6 5 9 9 C 1.38743 * 120.22083 * 0.25706 * 8 7 6 10 10 N 1.38859 * 120.16560 * 179.74733 * 9 8 7 11 11 C 1.41561 * 119.67122 * 359.51965 * 9 8 7 12 12 C 1.41025 * 120.27094 * 180.20651 * 11 9 8 13 13 H 1.07997 * 119.99960 * 333.89407 * 12 11 9 14 14 C 1.39888 * 120.00415 * 153.89399 * 12 11 9 15 15 N 1.30899 * 119.99897 * 343.97724 * 14 12 11 16 16 Si 1.86801 * 120.00033 * 163.97584 * 14 12 11 17 17 H 1.48502 * 109.46942 * 94.96317 * 16 14 12 18 18 H 1.48498 * 109.46838 * 214.96288 * 16 14 12 19 19 H 1.48504 * 109.47175 * 334.96611 * 16 14 12 20 20 C 1.38001 * 119.83960 * 180.02562 * 6 5 4 21 21 C 1.53007 * 109.46997 * 239.99717 * 2 1 3 22 22 C 1.52996 * 117.49985 * 128.62503 * 21 2 1 23 23 C 1.52996 * 60.00088 * 252.51253 * 22 21 2 24 24 H 1.09003 * 109.47002 * 300.00748 * 1 2 3 25 25 H 1.09005 * 109.46807 * 59.99973 * 1 2 3 26 26 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47328 * 174.99630 * 4 2 1 28 28 H 1.09004 * 109.47080 * 54.99417 * 4 2 1 29 29 H 0.96996 * 119.99879 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.73043 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.89719 * 179.97438 * 8 7 6 32 32 H 0.97000 * 120.00054 * 0.02562 * 10 9 8 33 33 H 0.97008 * 120.00077 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00194 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.11304 * 359.97438 * 20 6 5 36 36 H 1.09004 * 115.54659 * 274.33601 * 21 2 1 37 37 H 1.09001 * 117.49497 * 0.02562 * 22 21 2 38 38 H 1.08999 * 117.49834 * 145.01705 * 22 21 2 39 39 H 1.09000 * 117.49715 * 252.51129 * 23 22 21 40 40 H 1.09001 * 117.52167 * 107.47884 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0084 -0.4305 3.7121 7 6 2.7326 -1.6172 3.8387 8 6 3.0922 -2.0903 5.0847 9 6 2.7317 -1.3915 6.2278 10 7 3.0894 -1.8711 7.4808 11 6 2.0014 -0.1845 6.1101 12 6 1.6322 0.5383 7.2633 13 1 1.5115 0.0258 8.2062 14 6 1.4222 1.9192 7.1860 15 7 1.8608 2.5910 6.1518 16 14 0.5157 2.8044 8.5587 17 1 1.4990 3.3647 9.5202 18 1 -0.2981 3.9058 7.9845 19 1 -0.3741 1.8463 9.2626 20 6 1.6412 0.2847 4.8337 21 6 2.0400 -0.7213 -1.2493 22 6 3.0742 0.0049 -2.1117 23 6 1.6358 -0.1496 -2.6096 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1262 -0.7996 1.2056 28 1 1.6052 -1.7198 1.2952 29 1 1.1483 0.8591 2.3517 30 1 3.0139 -2.1699 2.9544 31 1 3.6521 -3.0099 5.1704 32 1 3.5930 -2.6965 7.5586 33 1 2.8364 -1.3804 8.2784 34 1 1.7149 3.5485 6.0979 35 1 1.0806 1.2022 4.7319 36 1 2.1266 -1.8046 -1.1642 37 1 3.3915 0.9965 -1.7889 38 1 3.8416 -0.6004 -2.5941 39 1 1.4568 -0.8567 -3.4196 40 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127533800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:02 Heat of formation + Delta-G solvation = 33.873191 kcal Electronic energy + Delta-G solvation = -18944.739857 eV Core-core repulsion = 16144.991221 eV Total energy + Delta-G solvation = -2799.748636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.52133 -37.66552 -35.35590 -33.42535 -32.79194 -30.52498 -29.37526 -27.05129 -25.26399 -24.69325 -22.47898 -22.33047 -21.04253 -19.71057 -19.55037 -17.03539 -16.31575 -15.48493 -15.42630 -15.10417 -14.62480 -14.54632 -14.22052 -13.76527 -12.93145 -12.69159 -12.49566 -12.32916 -11.94513 -11.85059 -11.62453 -11.45582 -11.30954 -11.03846 -10.98469 -10.95950 -10.68231 -10.34036 -10.24366 -10.00505 -9.77963 -9.63819 -9.27929 -9.02132 -7.70698 -7.18170 -6.58414 -5.48753 -4.03265 2.93192 3.14859 3.19376 3.33868 3.52244 3.74085 4.05780 4.34985 4.79965 4.84939 4.85577 4.90951 5.14056 5.42258 5.45310 5.46346 5.54369 5.60732 5.82195 5.91407 5.92718 6.03096 6.04595 6.15544 6.25131 6.38146 6.41004 6.51066 6.68128 7.16006 7.19583 7.35290 7.53161 7.74611 7.92435 8.04110 8.16330 8.49715 8.79949 8.94528 8.98339 9.03937 9.29491 9.38063 10.40779 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.004665 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.311393 B = 6000.632787 C = 6913.010097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 H 0.072 0.928 4 C 0.148 3.852 5 N -0.762 5.762 6 C 0.178 3.822 7 C -0.255 4.255 8 C -0.153 4.153 9 C 0.084 3.916 10 N -0.889 5.889 11 C 0.096 3.904 12 C -0.465 4.465 13 H 0.070 0.930 14 C 0.077 3.923 15 N -0.801 5.801 16 Si 0.900 3.100 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.201 4.201 21 C -0.141 4.141 22 C -0.181 4.181 23 C -0.181 4.181 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.386 0.614 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.374 0.626 33 H 0.388 0.612 34 H 0.274 0.726 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -2.969 -10.819 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 H 0.091 0.909 4 C 0.022 3.978 5 N -0.398 5.398 6 C 0.079 3.921 7 C -0.279 4.279 8 C -0.177 4.177 9 C -0.017 4.017 10 N -0.432 5.432 11 C 0.091 3.909 12 C -0.496 4.496 13 H 0.089 0.911 14 C -0.139 4.139 15 N -0.428 5.428 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.226 4.226 21 C -0.160 4.160 22 C -0.218 4.218 23 C -0.218 4.218 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.220 0.780 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.199 0.801 33 H 0.216 0.784 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.895 -2.828 -11.086 11.476 hybrid contribution -0.332 0.665 0.814 1.102 sum -1.227 -2.163 -10.273 10.569 Atomic orbital electron populations 1.21780 0.94715 1.02021 1.01396 1.20927 0.96034 0.99285 0.92803 0.90943 1.20962 0.98274 0.94589 0.83945 1.44330 1.65061 1.27994 1.02367 1.17511 0.96806 0.93689 0.84056 1.19612 1.13100 0.99687 0.95475 1.19704 1.06437 0.99804 0.91748 1.17856 1.01745 0.97333 0.84762 1.41804 1.67009 1.28825 1.05551 1.16963 0.90982 0.89860 0.93139 1.19123 1.42619 0.92078 0.95793 0.91150 1.25736 0.93817 0.97929 0.96393 1.69885 1.35427 1.08592 1.28892 0.86446 0.80196 0.79296 0.81534 1.19966 1.20353 1.18758 1.20477 1.09264 1.02777 0.90044 1.22239 1.03298 0.99260 0.91166 1.23013 0.92363 1.02173 1.04247 1.22913 0.98182 1.03281 0.97376 0.92198 0.93088 0.92615 0.93622 0.93665 0.78030 0.89756 0.89837 0.80143 0.78370 0.91525 0.86580 0.87757 0.88810 0.89047 0.89110 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.91 37.16 0.33 -1.39 16 2 C -0.07 -0.91 2.58 -90.62 -0.23 -1.15 16 3 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 4 C 0.15 2.37 4.28 -4.04 -0.02 2.35 16 5 N -0.76 -14.86 5.46 -58.64 -0.32 -15.18 16 6 C 0.18 4.23 6.64 -83.77 -0.56 3.67 16 7 C -0.25 -5.93 9.31 -39.14 -0.36 -6.30 16 8 C -0.15 -3.58 9.86 -39.46 -0.39 -3.97 16 9 C 0.08 2.07 6.79 -83.23 -0.56 1.51 16 10 N -0.89 -18.55 8.98 32.75 0.29 -18.26 16 11 C 0.10 2.58 5.57 -106.65 -0.59 1.99 16 12 C -0.46 -12.36 8.48 -37.91 -0.32 -12.69 16 13 H 0.07 1.78 6.70 -52.49 -0.35 1.43 16 14 C 0.08 1.97 5.16 -17.33 -0.09 1.88 16 15 N -0.80 -21.20 10.98 55.55 0.61 -20.59 16 16 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.20 -5.30 8.49 -38.75 -0.33 -5.63 16 21 C -0.14 -1.55 5.15 -90.62 -0.47 -2.02 16 22 C -0.18 -1.82 10.18 -26.73 -0.27 -2.10 16 23 C -0.18 -1.71 9.73 -26.73 -0.26 -1.97 16 24 H 0.06 0.79 7.18 -51.93 -0.37 0.41 16 25 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 28 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.39 7.22 7.66 -40.82 -0.31 6.91 16 30 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16 31 H 0.08 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 33 H 0.39 7.93 7.05 -40.82 -0.29 7.64 16 34 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 35 H 0.12 3.17 6.23 -52.49 -0.33 2.84 16 36 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 37 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.86 7.61 -51.93 -0.39 0.47 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -28.39 323.41 -9.74 -38.12 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -6.04 Total: 22.77 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -4.13 Total: -25.81 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.58 Total: -54.02 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.39 -9.74 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127533800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.997 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds