Wall clock time and date at job start Mon Mar 30 2020 06:49:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08994 * 109.47423 * 2 1
4 4 C 1.53000 * 109.46949 * 120.00180 * 2 1 3
5 5 N 1.46501 * 109.46875 * 294.99529 * 4 2 1
6 6 C 1.39855 * 120.00094 * 179.97438 * 5 4 2
7 7 C 1.39603 * 119.83640 * 359.97438 * 6 5 4
8 8 C 1.38051 * 120.54953 * 179.97438 * 7 6 5
9 9 C 1.38743 * 120.22083 * 0.25706 * 8 7 6
10 10 N 1.38859 * 120.16560 * 179.74733 * 9 8 7
11 11 C 1.41561 * 119.67122 * 359.51965 * 9 8 7
12 12 C 1.41025 * 120.27094 * 180.20651 * 11 9 8
13 13 H 1.07997 * 119.99960 * 333.89407 * 12 11 9
14 14 C 1.39888 * 120.00415 * 153.89399 * 12 11 9
15 15 N 1.30899 * 119.99897 * 343.97724 * 14 12 11
16 16 Si 1.86801 * 120.00033 * 163.97584 * 14 12 11
17 17 H 1.48502 * 109.46942 * 94.96317 * 16 14 12
18 18 H 1.48498 * 109.46838 * 214.96288 * 16 14 12
19 19 H 1.48504 * 109.47175 * 334.96611 * 16 14 12
20 20 C 1.38001 * 119.83960 * 180.02562 * 6 5 4
21 21 C 1.53007 * 109.46997 * 239.99717 * 2 1 3
22 22 C 1.52996 * 117.49985 * 128.62503 * 21 2 1
23 23 C 1.52996 * 60.00088 * 252.51253 * 22 21 2
24 24 H 1.09003 * 109.47002 * 300.00748 * 1 2 3
25 25 H 1.09005 * 109.46807 * 59.99973 * 1 2 3
26 26 H 1.08994 * 109.47423 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.47328 * 174.99630 * 4 2 1
28 28 H 1.09004 * 109.47080 * 54.99417 * 4 2 1
29 29 H 0.96996 * 119.99879 * 0.02562 * 5 4 2
30 30 H 1.08002 * 119.73043 * 359.97438 * 7 6 5
31 31 H 1.08004 * 119.89719 * 179.97438 * 8 7 6
32 32 H 0.97000 * 120.00054 * 0.02562 * 10 9 8
33 33 H 0.97008 * 120.00077 * 179.97438 * 10 9 8
34 34 H 0.96999 * 120.00194 * 179.97438 * 15 14 12
35 35 H 1.07999 * 120.11304 * 359.97438 * 20 6 5
36 36 H 1.09004 * 115.54659 * 274.33601 * 21 2 1
37 37 H 1.09001 * 117.49497 * 0.02562 * 22 21 2
38 38 H 1.08999 * 117.49834 * 145.01705 * 22 21 2
39 39 H 1.09000 * 117.49715 * 252.51129 * 23 22 21
40 40 H 1.09001 * 117.52167 * 107.47884 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 1.6524 0.0354 2.4423
6 6 2.0084 -0.4305 3.7121
7 6 2.7326 -1.6172 3.8387
8 6 3.0922 -2.0903 5.0847
9 6 2.7317 -1.3915 6.2278
10 7 3.0894 -1.8711 7.4808
11 6 2.0014 -0.1845 6.1101
12 6 1.6322 0.5383 7.2633
13 1 1.5115 0.0258 8.2062
14 6 1.4222 1.9192 7.1860
15 7 1.8608 2.5910 6.1518
16 14 0.5157 2.8044 8.5587
17 1 1.4990 3.3647 9.5202
18 1 -0.2981 3.9058 7.9845
19 1 -0.3741 1.8463 9.2626
20 6 1.6412 0.2847 4.8337
21 6 2.0400 -0.7213 -1.2493
22 6 3.0742 0.0049 -2.1117
23 6 1.6358 -0.1496 -2.6096
24 1 -0.3633 0.5140 0.8899
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3634 -1.0276 0.0005
27 1 3.1262 -0.7996 1.2056
28 1 1.6052 -1.7198 1.2952
29 1 1.1483 0.8591 2.3517
30 1 3.0139 -2.1699 2.9544
31 1 3.6521 -3.0099 5.1704
32 1 3.5930 -2.6965 7.5586
33 1 2.8364 -1.3804 8.2784
34 1 1.7149 3.5485 6.0979
35 1 1.0806 1.2022 4.7319
36 1 2.1266 -1.8046 -1.1642
37 1 3.3915 0.9965 -1.7889
38 1 3.8416 -0.6004 -2.5941
39 1 1.4568 -0.8567 -3.4196
40 1 1.0061 0.7402 -2.6146
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000127533800.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:49:02
Heat of formation + Delta-G solvation = 33.873191 kcal
Electronic energy + Delta-G solvation = -18944.739857 eV
Core-core repulsion = 16144.991221 eV
Total energy + Delta-G solvation = -2799.748636 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-38.52133 -37.66552 -35.35590 -33.42535 -32.79194 -30.52498 -29.37526 -27.05129
-25.26399 -24.69325 -22.47898 -22.33047 -21.04253 -19.71057 -19.55037 -17.03539
-16.31575 -15.48493 -15.42630 -15.10417 -14.62480 -14.54632 -14.22052 -13.76527
-12.93145 -12.69159 -12.49566 -12.32916 -11.94513 -11.85059 -11.62453 -11.45582
-11.30954 -11.03846 -10.98469 -10.95950 -10.68231 -10.34036 -10.24366 -10.00505
-9.77963 -9.63819 -9.27929 -9.02132 -7.70698 -7.18170 -6.58414 -5.48753
-4.03265 2.93192 3.14859 3.19376 3.33868 3.52244 3.74085 4.05780
4.34985 4.79965 4.84939 4.85577 4.90951 5.14056 5.42258 5.45310
5.46346 5.54369 5.60732 5.82195 5.91407 5.92718 6.03096 6.04595
6.15544 6.25131 6.38146 6.41004 6.51066 6.68128 7.16006 7.19583
7.35290 7.53161 7.74611 7.92435 8.04110 8.16330 8.49715 8.79949
8.94528 8.98339 9.03937 9.29491 9.38063 10.40779
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.022977 B = 0.004665 C = 0.004049
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.311393 B = 6000.632787 C = 6913.010097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.072 4.072
3 H 0.072 0.928
4 C 0.148 3.852
5 N -0.762 5.762
6 C 0.178 3.822
7 C -0.255 4.255
8 C -0.153 4.153
9 C 0.084 3.916
10 N -0.889 5.889
11 C 0.096 3.904
12 C -0.465 4.465
13 H 0.070 0.930
14 C 0.077 3.923
15 N -0.801 5.801
16 Si 0.900 3.100
17 H -0.274 1.274
18 H -0.278 1.278
19 H -0.264 1.264
20 C -0.201 4.201
21 C -0.141 4.141
22 C -0.181 4.181
23 C -0.181 4.181
24 H 0.059 0.941
25 H 0.050 0.950
26 H 0.055 0.945
27 H 0.046 0.954
28 H 0.045 0.955
29 H 0.386 0.614
30 H 0.084 0.916
31 H 0.083 0.917
32 H 0.374 0.626
33 H 0.388 0.612
34 H 0.274 0.726
35 H 0.116 0.884
36 H 0.104 0.896
37 H 0.093 0.907
38 H 0.091 0.909
39 H 0.090 0.910
40 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.960 -2.969 -10.819 11.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.090 4.090
3 H 0.091 0.909
4 C 0.022 3.978
5 N -0.398 5.398
6 C 0.079 3.921
7 C -0.279 4.279
8 C -0.177 4.177
9 C -0.017 4.017
10 N -0.432 5.432
11 C 0.091 3.909
12 C -0.496 4.496
13 H 0.089 0.911
14 C -0.139 4.139
15 N -0.428 5.428
16 Si 0.725 3.275
17 H -0.200 1.200
18 H -0.204 1.204
19 H -0.188 1.188
20 C -0.226 4.226
21 C -0.160 4.160
22 C -0.218 4.218
23 C -0.218 4.218
24 H 0.078 0.922
25 H 0.069 0.931
26 H 0.074 0.926
27 H 0.064 0.936
28 H 0.063 0.937
29 H 0.220 0.780
30 H 0.102 0.898
31 H 0.102 0.898
32 H 0.199 0.801
33 H 0.216 0.784
34 H 0.085 0.915
35 H 0.134 0.866
36 H 0.122 0.878
37 H 0.112 0.888
38 H 0.110 0.890
39 H 0.109 0.891
40 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -0.895 -2.828 -11.086 11.476
hybrid contribution -0.332 0.665 0.814 1.102
sum -1.227 -2.163 -10.273 10.569
Atomic orbital electron populations
1.21780 0.94715 1.02021 1.01396 1.20927 0.96034 0.99285 0.92803
0.90943 1.20962 0.98274 0.94589 0.83945 1.44330 1.65061 1.27994
1.02367 1.17511 0.96806 0.93689 0.84056 1.19612 1.13100 0.99687
0.95475 1.19704 1.06437 0.99804 0.91748 1.17856 1.01745 0.97333
0.84762 1.41804 1.67009 1.28825 1.05551 1.16963 0.90982 0.89860
0.93139 1.19123 1.42619 0.92078 0.95793 0.91150 1.25736 0.93817
0.97929 0.96393 1.69885 1.35427 1.08592 1.28892 0.86446 0.80196
0.79296 0.81534 1.19966 1.20353 1.18758 1.20477 1.09264 1.02777
0.90044 1.22239 1.03298 0.99260 0.91166 1.23013 0.92363 1.02173
1.04247 1.22913 0.98182 1.03281 0.97376 0.92198 0.93088 0.92615
0.93622 0.93665 0.78030 0.89756 0.89837 0.80143 0.78370 0.91525
0.86580 0.87757 0.88810 0.89047 0.89110 0.88909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.72 8.91 37.16 0.33 -1.39 16
2 C -0.07 -0.91 2.58 -90.62 -0.23 -1.15 16
3 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16
4 C 0.15 2.37 4.28 -4.04 -0.02 2.35 16
5 N -0.76 -14.86 5.46 -58.64 -0.32 -15.18 16
6 C 0.18 4.23 6.64 -83.77 -0.56 3.67 16
7 C -0.25 -5.93 9.31 -39.14 -0.36 -6.30 16
8 C -0.15 -3.58 9.86 -39.46 -0.39 -3.97 16
9 C 0.08 2.07 6.79 -83.23 -0.56 1.51 16
10 N -0.89 -18.55 8.98 32.75 0.29 -18.26 16
11 C 0.10 2.58 5.57 -106.65 -0.59 1.99 16
12 C -0.46 -12.36 8.48 -37.91 -0.32 -12.69 16
13 H 0.07 1.78 6.70 -52.49 -0.35 1.43 16
14 C 0.08 1.97 5.16 -17.33 -0.09 1.88 16
15 N -0.80 -21.20 10.98 55.55 0.61 -20.59 16
16 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16
17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16
19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16
20 C -0.20 -5.30 8.49 -38.75 -0.33 -5.63 16
21 C -0.14 -1.55 5.15 -90.62 -0.47 -2.02 16
22 C -0.18 -1.82 10.18 -26.73 -0.27 -2.10 16
23 C -0.18 -1.71 9.73 -26.73 -0.26 -1.97 16
24 H 0.06 0.79 7.18 -51.93 -0.37 0.41 16
25 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16
26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16
28 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16
29 H 0.39 7.22 7.66 -40.82 -0.31 6.91 16
30 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16
31 H 0.08 1.75 8.06 -52.48 -0.42 1.33 16
32 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16
33 H 0.39 7.93 7.05 -40.82 -0.29 7.64 16
34 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16
35 H 0.12 3.17 6.23 -52.49 -0.33 2.84 16
36 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16
37 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16
38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.09 0.86 7.61 -51.93 -0.39 0.47 16
LS Contribution 323.41 15.07 4.87 4.87
Total: -1.00 -28.39 323.41 -9.74 -38.12
By element:
Atomic # 1 Polarization: 28.80 SS G_CDS: -6.04 Total: 22.77 kcal
Atomic # 6 Polarization: -21.68 SS G_CDS: -4.13 Total: -25.81 kcal
Atomic # 7 Polarization: -54.61 SS G_CDS: 0.58 Total: -54.02 kcal
Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal
Total LS contribution 4.87 Total: 4.87 kcal
Total: -28.39 -9.74 -38.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000127533800.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.997 kcal
(2) G-P(sol) polarization free energy of solvation -28.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds