Wall clock time and date at job start Mon Mar 30 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47423 * 2 1 4 4 C 1.53000 * 109.46949 * 120.00180 * 2 1 3 5 5 N 1.46501 * 109.46875 * 294.99529 * 4 2 1 6 6 C 1.39855 * 120.00094 * 179.97438 * 5 4 2 7 7 C 1.39603 * 119.83640 * 359.97438 * 6 5 4 8 8 C 1.38051 * 120.54953 * 179.97438 * 7 6 5 9 9 C 1.38743 * 120.22083 * 0.25706 * 8 7 6 10 10 N 1.38859 * 120.16560 * 179.74733 * 9 8 7 11 11 C 1.41561 * 119.67122 * 359.51965 * 9 8 7 12 12 C 1.41025 * 120.27094 * 180.20651 * 11 9 8 13 13 H 1.07997 * 119.99960 * 333.89407 * 12 11 9 14 14 C 1.39888 * 120.00415 * 153.89399 * 12 11 9 15 15 N 1.30899 * 119.99897 * 343.97724 * 14 12 11 16 16 Si 1.86801 * 120.00033 * 163.97584 * 14 12 11 17 17 H 1.48502 * 109.46942 * 94.96317 * 16 14 12 18 18 H 1.48498 * 109.46838 * 214.96288 * 16 14 12 19 19 H 1.48504 * 109.47175 * 334.96611 * 16 14 12 20 20 C 1.38001 * 119.83960 * 180.02562 * 6 5 4 21 21 C 1.53007 * 109.46997 * 239.99717 * 2 1 3 22 22 C 1.52996 * 117.49985 * 128.62503 * 21 2 1 23 23 C 1.52996 * 60.00088 * 252.51253 * 22 21 2 24 24 H 1.09003 * 109.47002 * 300.00748 * 1 2 3 25 25 H 1.09005 * 109.46807 * 59.99973 * 1 2 3 26 26 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47328 * 174.99630 * 4 2 1 28 28 H 1.09004 * 109.47080 * 54.99417 * 4 2 1 29 29 H 0.96996 * 119.99879 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.73043 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.89719 * 179.97438 * 8 7 6 32 32 H 0.97000 * 120.00054 * 0.02562 * 10 9 8 33 33 H 0.97008 * 120.00077 * 179.97438 * 10 9 8 34 34 H 0.96999 * 120.00194 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.11304 * 359.97438 * 20 6 5 36 36 H 1.09004 * 115.54659 * 274.33601 * 21 2 1 37 37 H 1.09001 * 117.49497 * 0.02562 * 22 21 2 38 38 H 1.08999 * 117.49834 * 145.01705 * 22 21 2 39 39 H 1.09000 * 117.49715 * 252.51129 * 23 22 21 40 40 H 1.09001 * 117.52167 * 107.47884 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0084 -0.4305 3.7121 7 6 2.7326 -1.6172 3.8387 8 6 3.0922 -2.0903 5.0847 9 6 2.7317 -1.3915 6.2278 10 7 3.0894 -1.8711 7.4808 11 6 2.0014 -0.1845 6.1101 12 6 1.6322 0.5383 7.2633 13 1 1.5115 0.0258 8.2062 14 6 1.4222 1.9192 7.1860 15 7 1.8608 2.5910 6.1518 16 14 0.5157 2.8044 8.5587 17 1 1.4990 3.3647 9.5202 18 1 -0.2981 3.9058 7.9845 19 1 -0.3741 1.8463 9.2626 20 6 1.6412 0.2847 4.8337 21 6 2.0400 -0.7213 -1.2493 22 6 3.0742 0.0049 -2.1117 23 6 1.6358 -0.1496 -2.6096 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1262 -0.7996 1.2056 28 1 1.6052 -1.7198 1.2952 29 1 1.1483 0.8591 2.3517 30 1 3.0139 -2.1699 2.9544 31 1 3.6521 -3.0099 5.1704 32 1 3.5930 -2.6965 7.5586 33 1 2.8364 -1.3804 8.2784 34 1 1.7149 3.5485 6.0979 35 1 1.0806 1.2022 4.7319 36 1 2.1266 -1.8046 -1.1642 37 1 3.3915 0.9965 -1.7889 38 1 3.8416 -0.6004 -2.5941 39 1 1.4568 -0.8567 -3.4196 40 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127533800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:01 Heat of formation + Delta-G solvation = 18.114834 kcal Electronic energy + Delta-G solvation = -18945.423190 eV Core-core repulsion = 16144.991221 eV Total energy + Delta-G solvation = -2800.431969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.90708 -39.07207 -36.83600 -35.32367 -34.22543 -31.97278 -31.29639 -28.61352 -26.78633 -26.43155 -23.75139 -23.09988 -22.78244 -21.38152 -20.70319 -18.88712 -17.91861 -17.23631 -16.84188 -16.55648 -16.20103 -15.83174 -15.53256 -15.00124 -14.55445 -14.15780 -13.90983 -13.85121 -13.55014 -13.45769 -13.09799 -12.95752 -12.68537 -12.57028 -12.37212 -12.10824 -12.02597 -11.76087 -11.65626 -11.36602 -11.15300 -11.05485 -10.92113 -10.77101 -9.38965 -9.12838 -8.49222 -7.28464 -5.99662 1.13019 1.41506 1.50383 1.55331 1.66265 2.27926 2.86191 2.93402 3.03985 3.74241 3.79297 3.94382 3.97250 4.05113 4.19845 4.40770 4.45467 4.61192 4.62652 4.81409 4.82071 4.86242 4.95721 5.03485 5.06563 5.19628 5.24627 5.30394 5.34594 5.36119 5.44232 5.48412 5.68578 5.90180 6.07365 6.17807 6.29551 6.57949 6.98387 7.07169 7.14440 7.28274 7.48650 7.67915 8.52054 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.004665 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.311393 B = 6000.632787 C = 6913.010097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 H 0.067 0.933 4 C 0.149 3.851 5 N -0.758 5.758 6 C 0.173 3.827 7 C -0.259 4.259 8 C -0.158 4.158 9 C 0.069 3.931 10 N -0.879 5.879 11 C 0.062 3.938 12 C -0.493 4.493 13 H 0.074 0.926 14 C 0.034 3.966 15 N -0.834 5.834 16 Si 0.974 3.026 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.260 1.260 20 C -0.226 4.226 21 C -0.154 4.154 22 C -0.184 4.184 23 C -0.167 4.167 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.388 0.612 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.390 0.610 33 H 0.390 0.610 34 H 0.279 0.721 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 -3.480 -11.667 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 H 0.085 0.915 4 C 0.024 3.976 5 N -0.392 5.392 6 C 0.073 3.927 7 C -0.283 4.283 8 C -0.182 4.182 9 C -0.033 4.033 10 N -0.423 5.423 11 C 0.056 3.944 12 C -0.525 4.525 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.462 5.462 16 Si 0.796 3.204 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.184 1.184 20 C -0.251 4.251 21 C -0.172 4.172 22 C -0.220 4.220 23 C -0.204 4.204 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.222 0.778 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.218 0.782 33 H 0.218 0.782 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.979 -3.363 -11.953 12.456 hybrid contribution -0.255 0.761 0.987 1.272 sum -1.234 -2.602 -10.966 11.338 Atomic orbital electron populations 1.21753 0.94173 1.02100 1.01560 1.20801 0.96388 0.98715 0.92106 0.91484 1.21102 0.97926 0.94649 0.83922 1.44422 1.64456 1.28201 1.02139 1.17633 0.96358 0.93678 0.85043 1.19918 1.12519 0.99505 0.96405 1.20051 1.06165 1.00567 0.91411 1.18030 1.01777 0.97067 0.86463 1.41676 1.66831 1.29392 1.04412 1.17361 0.92093 0.91272 0.93629 1.19393 1.44030 0.93003 0.96029 0.90787 1.26565 0.94060 0.98373 0.98882 1.69969 1.36366 1.09063 1.30806 0.85319 0.78816 0.77911 0.78328 1.19184 1.19818 1.18435 1.20450 1.10598 1.02836 0.91225 1.22164 1.04750 0.99300 0.91011 1.23086 0.93049 1.01949 1.03960 1.22993 0.97556 1.03377 0.96439 0.93744 0.91210 0.92548 0.94256 0.93622 0.77847 0.87678 0.87139 0.78208 0.78210 0.91086 0.88575 0.87438 0.89304 0.87965 0.87562 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.91 71.98 0.64 -2.55 16 2 C -0.06 -1.50 2.58 -10.79 -0.03 -1.52 16 3 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 4 C 0.15 4.66 4.28 86.38 0.37 5.03 16 5 N -0.76 -29.80 5.46 -339.43 -1.85 -31.65 16 6 C 0.17 8.34 6.64 38.13 0.25 8.59 16 7 C -0.26 -11.91 9.31 22.56 0.21 -11.70 16 8 C -0.16 -7.24 9.86 22.35 0.22 -7.02 16 9 C 0.07 3.39 6.79 38.97 0.26 3.65 16 10 N -0.88 -36.10 8.98 -50.31 -0.45 -36.55 16 11 C 0.06 3.40 5.57 -21.18 -0.12 3.28 16 12 C -0.49 -26.79 8.48 23.35 0.20 -26.59 16 13 H 0.07 3.80 6.70 -2.91 -0.02 3.78 16 14 C 0.03 1.75 5.16 85.23 0.44 2.19 16 15 N -0.83 -45.32 10.98 21.82 0.24 -45.08 16 16 Si 0.97 39.59 29.59 68.60 2.03 41.61 16 17 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 C -0.23 -12.33 8.49 22.81 0.19 -12.13 16 21 C -0.15 -3.09 5.15 -10.79 -0.06 -3.14 16 22 C -0.18 -3.33 10.18 30.59 0.31 -3.02 16 23 C -0.17 -2.72 9.73 30.59 0.30 -2.43 16 24 H 0.04 1.15 7.18 -2.39 -0.02 1.13 16 25 H 0.07 1.34 7.29 -2.38 -0.02 1.32 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.04 1.29 7.94 -2.39 -0.02 1.27 16 28 H 0.05 1.44 7.94 -2.38 -0.02 1.42 16 29 H 0.39 14.85 7.66 -92.71 -0.71 14.14 16 30 H 0.11 4.30 6.69 -2.91 -0.02 4.28 16 31 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.39 13.22 8.83 -92.71 -0.82 12.40 16 33 H 0.39 15.81 7.05 -92.70 -0.65 15.16 16 34 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 35 H 0.10 5.51 6.23 -2.91 -0.02 5.49 16 36 H 0.11 2.11 8.11 -2.38 -0.02 2.09 16 37 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.52 7.61 -2.39 -0.02 1.50 16 Total: -1.00 -61.37 323.41 2.04 -59.33 By element: Atomic # 1 Polarization: 60.82 SS G_CDS: -1.12 Total: 59.70 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 3.20 Total: -47.35 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -2.07 Total: -113.29 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.61 kcal Total: -61.37 2.04 -59.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127533800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.441 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds