Wall clock time and date at job start Mon Mar 30 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47031 * 2 1 4 4 N 1.46500 * 109.47155 * 239.99452 * 2 1 3 5 5 C 1.39850 * 119.99917 * 85.00165 * 4 2 1 6 6 C 1.39595 * 119.83773 * 359.72332 * 5 4 2 7 7 C 1.38066 * 120.54674 * 179.75951 * 6 5 4 8 8 C 1.38733 * 120.21888 * 0.51974 * 7 6 5 9 9 N 1.38859 * 120.16269 * 179.71786 * 8 7 6 10 10 C 1.41562 * 119.67405 * 359.74057 * 8 7 6 11 11 C 1.41026 * 120.26730 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00256 * 26.38157 * 11 10 8 13 13 C 1.39892 * 119.99970 * 206.38452 * 11 10 8 14 14 N 1.30907 * 119.99928 * 16.00386 * 13 11 10 15 15 Si 1.86797 * 119.99916 * 196.00655 * 13 11 10 16 16 H 1.48500 * 109.47246 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47317 * 120.00039 * 15 13 11 18 18 H 1.48499 * 109.47383 * 239.99745 * 15 13 11 19 19 C 1.38009 * 119.83864 * 179.97438 * 5 4 2 20 20 C 1.53004 * 109.46862 * 119.99434 * 2 1 3 21 21 C 1.53781 * 113.61642 * 282.40193 * 20 2 1 22 22 C 1.53783 * 87.08270 * 220.02151 * 21 20 2 23 23 C 1.53780 * 87.07882 * 25.43440 * 22 21 20 24 24 H 1.09007 * 109.46966 * 295.64533 * 1 2 3 25 25 H 1.08995 * 109.47086 * 55.64221 * 1 2 3 26 26 H 1.08996 * 109.47138 * 175.64616 * 1 2 3 27 27 H 0.97003 * 119.99629 * 265.00278 * 4 2 1 28 28 H 1.08002 * 119.73044 * 0.02562 * 6 5 4 29 29 H 1.08001 * 119.88683 * 180.25624 * 7 6 5 30 30 H 0.97007 * 120.00146 * 180.02562 * 9 8 7 31 31 H 0.96998 * 120.00125 * 0.02562 * 9 8 7 32 32 H 0.96999 * 119.99478 * 179.97438 * 14 13 11 33 33 H 1.08005 * 120.11401 * 359.96241 * 19 5 4 34 34 H 1.08996 * 112.85128 * 53.71371 * 20 2 1 35 35 H 1.08999 * 113.61641 * 334.57712 * 21 20 2 36 36 H 1.09008 * 113.60819 * 105.47221 * 21 20 2 37 37 H 1.09000 * 113.61388 * 270.88116 * 22 21 20 38 38 H 1.09005 * 113.68528 * 139.99496 * 22 21 20 39 39 H 1.09003 * 113.61348 * 220.01345 * 23 22 21 40 40 H 1.08995 * 113.61430 * 89.11764 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1520 0.0069 -2.4008 6 6 1.8135 1.3598 -2.4612 7 6 1.9444 2.0639 -3.6416 8 6 2.4049 1.4289 -4.7860 9 7 2.5305 2.1367 -5.9740 10 6 2.7456 0.0558 -4.7366 11 6 3.2145 -0.6022 -5.8925 12 1 3.7134 -0.0408 -6.6686 13 6 3.0332 -1.9821 -6.0339 14 7 2.1738 -2.6107 -5.2724 15 14 4.0176 -2.9276 -7.3091 16 1 4.9144 -1.9927 -8.0351 17 1 4.8320 -3.9693 -6.6333 18 1 3.0896 -3.5726 -8.2725 19 6 2.6128 -0.6470 -3.5254 20 6 2.0400 -0.7212 1.2494 21 6 1.9600 0.1299 2.5277 22 6 3.3281 -0.4586 2.9110 23 6 3.5689 -0.6731 1.4073 24 1 -0.3633 0.4448 0.9265 25 1 -0.3633 0.5799 -0.8483 26 1 -0.3633 -1.0247 -0.0780 27 1 2.2490 -1.6319 -1.1524 28 1 1.4504 1.8611 -1.5762 29 1 1.6833 3.1113 -3.6753 30 1 2.8523 1.6903 -6.7729 31 1 2.2963 3.0775 -6.0052 32 1 2.0479 -3.5675 -5.3708 33 1 2.8704 -1.6947 -3.4757 34 1 1.6206 -1.7209 1.3618 35 1 1.9835 1.2033 2.3399 36 1 1.1538 -0.1658 3.1993 37 1 3.2606 -1.3863 3.4792 38 1 4.0055 0.2661 3.3627 39 1 4.0619 -1.6170 1.1744 40 1 4.0323 0.1807 0.9132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127549564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:06 Heat of formation + Delta-G solvation = 16.548843 kcal Electronic energy + Delta-G solvation = -19385.884981 eV Core-core repulsion = 16585.385106 eV Total energy + Delta-G solvation = -2800.499876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38063 -39.36774 -36.75076 -35.30838 -33.82104 -31.37696 -31.02857 -27.84988 -26.89565 -26.19954 -26.06795 -23.29335 -22.20136 -21.19406 -20.29823 -18.86589 -17.87974 -17.26108 -16.72992 -16.59046 -16.35274 -15.85287 -15.29467 -14.58402 -14.37475 -14.20770 -13.85227 -13.71584 -13.42709 -13.26386 -13.09061 -13.02136 -12.78025 -12.67842 -12.56571 -12.28802 -11.97876 -11.80454 -11.43666 -11.32351 -11.15861 -11.03147 -10.93155 -10.88164 -9.35107 -9.11607 -8.48851 -7.25224 -5.99011 1.13031 1.40968 1.51665 1.54648 1.67859 2.27649 2.90922 2.97380 3.76837 3.79007 3.82027 3.91119 3.99361 4.09478 4.38379 4.41766 4.61707 4.65893 4.85597 4.86553 4.91493 4.93386 4.97488 5.11415 5.12873 5.16211 5.25568 5.36745 5.38380 5.43953 5.49241 5.67873 5.71187 5.93355 6.09091 6.20142 6.32812 6.59612 6.99691 7.09549 7.17767 7.32455 7.50480 7.68545 8.52400 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.005399 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.287588 B = 5185.337281 C = 5930.300836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 H 0.062 0.938 4 N -0.751 5.751 5 C 0.180 3.820 6 C -0.258 4.258 7 C -0.158 4.158 8 C 0.066 3.934 9 N -0.880 5.880 10 C 0.061 3.939 11 C -0.493 4.493 12 H 0.073 0.927 13 C 0.033 3.967 14 N -0.835 5.835 15 Si 0.974 3.026 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.272 1.272 19 C -0.227 4.227 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.138 4.138 24 H 0.079 0.921 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.386 0.614 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.389 0.611 31 H 0.390 0.610 32 H 0.278 0.722 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 2.701 11.583 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.383 5.383 5 C 0.080 3.920 6 C -0.282 4.282 7 C -0.182 4.182 8 C -0.036 4.036 9 N -0.424 5.424 10 C 0.056 3.944 11 C -0.524 4.524 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.463 5.463 15 Si 0.796 3.204 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.251 4.251 20 C -0.135 4.135 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.175 4.175 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.217 0.783 31 H 0.217 0.783 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.201 2.582 11.806 12.087 hybrid contribution 0.337 -0.800 -1.201 1.482 sum 0.136 1.782 10.605 10.755 Atomic orbital electron populations 1.22207 0.96627 1.01415 1.01551 1.20772 0.93057 0.95856 0.84045 0.92033 1.44462 1.75730 1.11290 1.06817 1.17589 0.96909 0.91438 0.86082 1.19926 1.17231 0.93120 0.97897 1.20057 1.07417 0.98407 0.92364 1.18037 1.05039 0.92631 0.87848 1.41672 1.79412 1.11777 1.09497 1.17360 0.93472 0.90238 0.93363 1.19409 1.35457 0.93388 1.04194 0.90907 1.26555 0.94273 0.98691 0.98370 1.69981 1.28202 1.10609 1.37476 0.85289 0.78763 0.78209 0.78132 1.18206 1.19700 1.19694 1.20447 1.13571 0.99525 0.91596 1.22808 0.96475 1.00066 0.94125 1.22855 0.98077 0.99486 0.95571 1.22803 0.97353 1.01633 0.95274 1.22840 0.95884 1.01353 0.97455 0.90228 0.94502 0.93352 0.78178 0.87571 0.87303 0.78273 0.78262 0.91159 0.88722 0.88976 0.89956 0.90005 0.89277 0.90870 0.92377 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.56 9.39 71.98 0.68 -3.89 16 2 C 0.17 5.09 1.97 44.99 0.09 5.18 16 3 H 0.06 1.98 6.38 -2.39 -0.02 1.96 16 4 N -0.75 -28.98 5.11 -318.97 -1.63 -30.62 16 5 C 0.18 8.55 6.63 38.13 0.25 8.80 16 6 C -0.26 -11.66 8.86 22.56 0.20 -11.46 16 7 C -0.16 -7.23 9.86 22.35 0.22 -7.01 16 8 C 0.07 3.28 6.79 38.97 0.26 3.54 16 9 N -0.88 -36.30 8.98 -50.31 -0.45 -36.75 16 10 C 0.06 3.36 5.57 -21.18 -0.12 3.24 16 11 C -0.49 -26.90 8.48 23.35 0.20 -26.70 16 12 H 0.07 3.78 6.71 -2.91 -0.02 3.76 16 13 C 0.03 1.74 5.16 85.23 0.44 2.18 16 14 N -0.83 -45.57 10.97 21.82 0.24 -45.33 16 15 Si 0.97 39.89 29.59 68.60 2.03 41.92 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 C -0.23 -12.30 8.49 22.81 0.19 -12.11 16 20 C -0.12 -2.75 3.18 -10.27 -0.03 -2.79 16 21 C -0.12 -2.26 7.42 31.12 0.23 -2.03 16 22 C -0.13 -2.42 8.08 31.12 0.25 -2.17 16 23 C -0.14 -3.33 7.50 31.12 0.23 -3.10 16 24 H 0.08 1.79 7.97 -2.38 -0.02 1.77 16 25 H 0.04 1.22 7.62 -2.39 -0.02 1.20 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.39 14.75 8.61 -92.71 -0.80 13.96 16 28 H 0.11 4.28 5.98 -2.91 -0.02 4.27 16 29 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.39 15.93 7.06 -92.70 -0.65 15.27 16 31 H 0.39 13.29 8.83 -92.71 -0.82 12.47 16 32 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 33 H 0.09 5.44 6.23 -2.91 -0.02 5.42 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 Total: -1.00 -61.37 320.08 2.08 -59.29 By element: Atomic # 1 Polarization: 60.99 SS G_CDS: -1.21 Total: 59.78 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 3.10 Total: -48.29 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -1.84 Total: -112.70 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -61.37 2.08 -59.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127549564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.839 kcal (2) G-P(sol) polarization free energy of solvation -61.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds