Wall clock time and date at job start Mon Mar 30 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 110.76540 * 2 1 4 4 C 1.55137 * 110.70922 * 236.80310 * 2 1 3 5 5 C 1.54901 * 101.65481 * 205.96243 * 4 2 1 6 6 H 1.08999 * 110.37667 * 278.23199 * 5 4 2 7 7 C 1.53009 * 110.37514 * 155.89624 * 5 4 2 8 8 N 1.47848 * 104.79752 * 37.06726 * 5 4 2 9 9 C 1.39846 * 110.99967 * 213.63764 * 8 5 4 10 10 C 1.39605 * 119.84173 * 338.52034 * 9 8 5 11 11 C 1.38063 * 120.55012 * 180.28313 * 10 9 8 12 12 C 1.38733 * 120.21715 * 359.72142 * 11 10 9 13 13 N 1.38864 * 120.16159 * 180.02562 * 12 11 10 14 14 C 1.41561 * 119.67839 * 0.02562 * 12 11 10 15 15 C 1.41026 * 120.27257 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99588 * 331.40827 * 15 14 12 17 17 C 1.39884 * 120.00271 * 151.40824 * 15 14 12 18 18 N 1.30903 * 120.00212 * 161.86384 * 17 15 14 19 19 Si 1.86804 * 119.99920 * 341.85859 * 17 15 14 20 20 H 1.48491 * 109.46909 * 95.36322 * 19 17 15 21 21 H 1.48505 * 109.46950 * 215.36284 * 19 17 15 22 22 H 1.48498 * 109.47170 * 335.36195 * 19 17 15 23 23 C 1.38007 * 119.83844 * 158.24826 * 9 8 5 24 24 C 1.47444 * 108.56267 * 335.90571 * 8 5 4 25 25 H 1.08997 * 109.46829 * 298.25097 * 1 2 3 26 26 H 1.08998 * 109.47325 * 58.25326 * 1 2 3 27 27 H 1.09001 * 109.46474 * 178.25143 * 1 2 3 28 28 H 1.09008 * 110.98711 * 324.05709 * 4 2 1 29 29 H 1.09000 * 110.99329 * 87.82706 * 4 2 1 30 30 H 1.08996 * 109.47016 * 303.17528 * 7 5 4 31 31 H 1.08994 * 109.46611 * 63.17080 * 7 5 4 32 32 H 1.08998 * 109.47029 * 183.17324 * 7 5 4 33 33 H 1.07997 * 119.72515 * 0.02562 * 10 9 8 34 34 H 1.07993 * 119.88734 * 179.69717 * 11 10 9 35 35 H 0.97005 * 119.99999 * 174.28876 * 13 12 11 36 36 H 0.96995 * 119.99910 * 354.29095 * 13 12 11 37 37 H 0.96995 * 120.00323 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.11466 * 359.97438 * 23 9 8 39 39 H 1.09001 * 109.88722 * 120.39970 * 24 8 5 40 40 H 1.09006 * 109.88304 * 241.41811 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9165 1.0193 0.0000 4 6 2.0786 -0.7945 -1.2143 5 6 3.4651 -1.2464 -0.6920 6 1 4.1931 -0.4429 -0.8037 7 6 3.9331 -2.4981 -1.4373 8 7 3.2490 -1.5501 0.7388 9 6 4.3835 -1.2372 1.4943 10 6 5.6298 -1.1476 0.8718 11 6 6.7602 -0.8454 1.6046 12 6 6.6675 -0.6214 2.9706 13 7 7.8052 -0.3171 3.7064 14 6 5.4076 -0.7047 3.6106 15 6 5.2991 -0.4800 4.9986 16 1 6.1344 -0.6976 5.6478 17 6 4.1097 0.0247 5.5346 18 7 3.8665 -0.0943 6.8153 19 14 2.8683 0.8687 4.4227 20 1 1.8369 -0.1117 3.9986 21 1 2.2193 1.9820 5.1608 22 1 3.5621 1.4068 3.2251 23 6 4.2646 -1.0131 2.8509 24 6 2.0757 -0.7903 1.2078 25 1 -0.3633 0.4864 0.9052 26 1 -0.3634 0.5407 -0.8739 27 1 -0.3632 -1.0272 -0.0314 28 1 1.4459 -1.6539 -1.4366 29 1 2.1806 -0.1510 -2.0882 30 1 3.1877 -3.2858 -1.3284 31 1 4.0629 -2.2644 -2.4940 32 1 4.8820 -2.8356 -1.0206 33 1 5.7110 -1.3201 -0.1912 34 1 7.7197 -0.7835 1.1128 35 1 7.7274 -0.0798 4.6438 36 1 8.6775 -0.3417 3.2832 37 1 3.0420 0.2560 7.1871 38 1 3.2980 -1.0786 3.3283 39 1 1.3133 -1.4763 1.5772 40 1 2.3716 -0.1033 2.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127557569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:13 Heat of formation + Delta-G solvation = 22.694812 kcal Electronic energy + Delta-G solvation = -20200.985797 eV Core-core repulsion = 17400.752431 eV Total energy + Delta-G solvation = -2800.233367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81214 -37.44439 -34.06165 -33.46048 -32.30445 -31.03755 -30.18905 -27.11217 -26.08982 -25.41868 -24.18763 -21.67528 -20.72568 -19.83361 -19.01072 -17.44568 -16.60848 -15.87616 -15.49905 -14.91259 -14.62436 -14.11274 -13.64034 -13.53745 -13.12901 -12.77886 -12.71935 -12.48104 -12.29080 -11.97675 -11.77805 -11.67226 -11.33886 -11.27217 -11.07716 -10.79532 -10.62055 -10.53086 -10.31866 -10.22297 -9.77671 -9.59102 -9.55319 -9.04782 -8.09596 -7.57087 -6.84423 -6.09512 -4.24175 2.69844 2.84387 3.12582 3.24372 3.33717 4.03843 4.36354 4.68348 4.74832 4.87356 5.06527 5.18848 5.48962 5.50503 5.54674 5.60459 5.68139 5.76533 5.79085 6.01526 6.04519 6.06557 6.10875 6.11472 6.23589 6.31730 6.38827 6.51575 6.53447 6.67453 6.77204 6.98870 7.23908 7.32485 7.42076 7.57204 7.85645 8.07974 8.22624 8.43507 8.52489 8.82939 8.98940 9.05116 10.18469 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.009161 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.339420 B = 3055.773253 C = 4335.715559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.066 3.934 6 H 0.067 0.933 7 C -0.136 4.136 8 N -0.472 5.472 9 C 0.094 3.906 10 C -0.227 4.227 11 C -0.158 4.158 12 C 0.117 3.883 13 N -0.883 5.883 14 C 0.066 3.934 15 C -0.449 4.449 16 H 0.087 0.913 17 C 0.084 3.916 18 N -0.819 5.819 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.296 1.296 22 H -0.247 1.247 23 C -0.239 4.239 24 C 0.037 3.963 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.394 0.606 36 H 0.378 0.622 37 H 0.282 0.718 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 0.869 -12.118 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.041 4.041 6 H 0.085 0.915 7 C -0.193 4.193 8 N -0.188 5.188 9 C -0.003 4.003 10 C -0.250 4.250 11 C -0.183 4.183 12 C 0.015 3.985 13 N -0.425 5.425 14 C 0.060 3.940 15 C -0.479 4.479 16 H 0.105 0.895 17 C -0.133 4.133 18 N -0.444 5.444 19 Si 0.736 3.264 20 H -0.194 1.194 21 H -0.224 1.224 22 H -0.170 1.170 23 C -0.262 4.262 24 C -0.089 4.089 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.223 0.777 36 H 0.203 0.797 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.457 0.337 -11.838 12.337 hybrid contribution -0.153 1.123 -0.081 1.137 sum -3.611 1.460 -11.919 12.539 Atomic orbital electron populations 1.21723 0.94500 1.01906 1.01488 1.22402 0.96135 0.99482 0.95645 0.90732 1.22845 0.96307 0.99605 0.97031 1.22715 0.96278 0.97374 0.87765 0.91545 1.21760 1.02038 0.97303 0.98247 1.60745 1.03616 1.52349 1.02079 1.18537 0.89415 0.99969 0.92428 1.20084 0.91743 1.15314 0.97812 1.19893 0.96989 1.09149 0.92228 1.17838 0.87931 1.02594 0.90144 1.41930 1.05196 1.81854 1.13494 1.17235 0.89649 0.93940 0.93195 1.19091 0.99785 1.37932 0.91093 0.89471 1.26047 0.97877 0.94084 0.95263 1.69726 1.25045 1.35969 1.13695 0.86480 0.80255 0.78829 0.80883 1.19411 1.22431 1.17040 1.20405 0.98179 1.15072 0.92550 1.23257 0.92926 0.95780 0.96932 0.92639 0.92722 0.92368 0.90764 0.91253 0.92367 0.92971 0.91858 0.88124 0.88979 0.77704 0.79651 0.90799 0.87872 0.90859 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.13 37.16 0.34 -1.33 16 2 C -0.12 -1.72 3.54 -88.80 -0.31 -2.04 16 3 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 4 C -0.12 -1.60 5.94 -24.60 -0.15 -1.74 16 5 C 0.07 1.05 2.34 -66.18 -0.16 0.90 16 6 H 0.07 1.13 6.41 -51.93 -0.33 0.80 16 7 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 8 N -0.47 -9.26 4.93 -160.49 -0.79 -10.05 16 9 C 0.09 2.12 5.78 -83.78 -0.48 1.64 16 10 C -0.23 -4.84 8.33 -39.14 -0.33 -5.17 16 11 C -0.16 -3.39 9.87 -39.46 -0.39 -3.78 16 12 C 0.12 2.70 6.79 -83.23 -0.56 2.14 16 13 N -0.88 -17.35 8.97 32.75 0.29 -17.05 16 14 C 0.07 1.68 5.15 -106.66 -0.55 1.13 16 15 C -0.45 -12.12 8.91 -37.91 -0.34 -12.46 16 16 H 0.09 2.41 7.04 -52.48 -0.37 2.04 16 17 C 0.08 2.25 5.41 -17.33 -0.09 2.16 16 18 N -0.82 -22.24 13.93 55.54 0.77 -21.47 16 19 Si 0.91 21.37 22.60 -169.99 -3.84 17.53 16 20 H -0.27 -6.08 6.27 56.52 0.35 -5.72 16 21 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.25 -5.97 6.80 56.52 0.38 -5.59 16 23 C -0.24 -5.96 5.97 -38.75 -0.23 -6.19 16 24 C 0.04 0.69 5.76 -2.84 -0.02 0.68 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.93 7.95 -51.92 -0.41 0.52 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.96 6.70 -51.93 -0.35 0.62 16 33 H 0.10 1.90 4.94 -52.49 -0.26 1.65 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.39 7.81 7.16 -40.82 -0.29 7.52 16 36 H 0.38 6.14 8.84 -40.82 -0.36 5.78 16 37 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 38 H 0.10 2.62 3.64 -52.49 -0.19 2.43 16 39 H 0.07 1.32 7.82 -51.93 -0.41 0.92 16 40 H 0.07 1.42 3.31 -51.93 -0.17 1.25 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -28.41 299.86 -7.70 -36.11 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -5.72 Total: 16.05 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -2.93 Total: -25.63 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.28 Total: -48.58 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -3.84 Total: 17.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.41 -7.70 -36.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127557569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.802 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds