Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 110.76540 * 2 1 4 4 C 1.55137 * 110.70922 * 236.80310 * 2 1 3 5 5 C 1.54901 * 101.65481 * 205.96243 * 4 2 1 6 6 H 1.08999 * 110.37667 * 278.23199 * 5 4 2 7 7 C 1.53009 * 110.37514 * 155.89624 * 5 4 2 8 8 N 1.47848 * 104.79752 * 37.06726 * 5 4 2 9 9 C 1.39846 * 110.99967 * 213.63764 * 8 5 4 10 10 C 1.39605 * 119.84173 * 338.52034 * 9 8 5 11 11 C 1.38063 * 120.55012 * 180.28313 * 10 9 8 12 12 C 1.38733 * 120.21715 * 359.72142 * 11 10 9 13 13 N 1.38864 * 120.16159 * 180.02562 * 12 11 10 14 14 C 1.41561 * 119.67839 * 0.02562 * 12 11 10 15 15 C 1.41026 * 120.27257 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99588 * 331.40827 * 15 14 12 17 17 C 1.39884 * 120.00271 * 151.40824 * 15 14 12 18 18 N 1.30903 * 120.00212 * 161.86384 * 17 15 14 19 19 Si 1.86804 * 119.99920 * 341.85859 * 17 15 14 20 20 H 1.48491 * 109.46909 * 95.36322 * 19 17 15 21 21 H 1.48505 * 109.46950 * 215.36284 * 19 17 15 22 22 H 1.48498 * 109.47170 * 335.36195 * 19 17 15 23 23 C 1.38007 * 119.83844 * 158.24826 * 9 8 5 24 24 C 1.47444 * 108.56267 * 335.90571 * 8 5 4 25 25 H 1.08997 * 109.46829 * 298.25097 * 1 2 3 26 26 H 1.08998 * 109.47325 * 58.25326 * 1 2 3 27 27 H 1.09001 * 109.46474 * 178.25143 * 1 2 3 28 28 H 1.09008 * 110.98711 * 324.05709 * 4 2 1 29 29 H 1.09000 * 110.99329 * 87.82706 * 4 2 1 30 30 H 1.08996 * 109.47016 * 303.17528 * 7 5 4 31 31 H 1.08994 * 109.46611 * 63.17080 * 7 5 4 32 32 H 1.08998 * 109.47029 * 183.17324 * 7 5 4 33 33 H 1.07997 * 119.72515 * 0.02562 * 10 9 8 34 34 H 1.07993 * 119.88734 * 179.69717 * 11 10 9 35 35 H 0.97005 * 119.99999 * 174.28876 * 13 12 11 36 36 H 0.96995 * 119.99910 * 354.29095 * 13 12 11 37 37 H 0.96995 * 120.00323 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.11466 * 359.97438 * 23 9 8 39 39 H 1.09001 * 109.88722 * 120.39970 * 24 8 5 40 40 H 1.09006 * 109.88304 * 241.41811 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9165 1.0193 0.0000 4 6 2.0786 -0.7945 -1.2143 5 6 3.4651 -1.2464 -0.6920 6 1 4.1931 -0.4429 -0.8037 7 6 3.9331 -2.4981 -1.4373 8 7 3.2490 -1.5501 0.7388 9 6 4.3835 -1.2372 1.4943 10 6 5.6298 -1.1476 0.8718 11 6 6.7602 -0.8454 1.6046 12 6 6.6675 -0.6214 2.9706 13 7 7.8052 -0.3171 3.7064 14 6 5.4076 -0.7047 3.6106 15 6 5.2991 -0.4800 4.9986 16 1 6.1344 -0.6976 5.6478 17 6 4.1097 0.0247 5.5346 18 7 3.8665 -0.0943 6.8153 19 14 2.8683 0.8687 4.4227 20 1 1.8369 -0.1117 3.9986 21 1 2.2193 1.9820 5.1608 22 1 3.5621 1.4068 3.2251 23 6 4.2646 -1.0131 2.8509 24 6 2.0757 -0.7903 1.2078 25 1 -0.3633 0.4864 0.9052 26 1 -0.3634 0.5407 -0.8739 27 1 -0.3632 -1.0272 -0.0314 28 1 1.4459 -1.6539 -1.4366 29 1 2.1806 -0.1510 -2.0882 30 1 3.1877 -3.2858 -1.3284 31 1 4.0629 -2.2644 -2.4940 32 1 4.8820 -2.8356 -1.0206 33 1 5.7110 -1.3201 -0.1912 34 1 7.7197 -0.7835 1.1128 35 1 7.7274 -0.0798 4.6438 36 1 8.6775 -0.3417 3.2832 37 1 3.0420 0.2560 7.1871 38 1 3.2980 -1.0786 3.3283 39 1 1.3133 -1.4763 1.5772 40 1 2.3716 -0.1033 2.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127557569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = 3.704545 kcal Electronic energy + Delta-G solvation = -20201.809277 eV Core-core repulsion = 17400.752431 eV Total energy + Delta-G solvation = -2801.056846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28665 -39.08729 -35.61366 -35.30568 -33.65084 -32.52784 -31.96494 -28.47168 -27.51246 -26.98095 -25.77251 -23.36709 -22.18322 -21.15129 -20.55104 -19.21581 -18.35531 -17.49523 -17.09059 -16.55814 -16.18059 -15.50583 -15.11615 -15.02022 -14.85203 -14.23120 -14.11812 -13.85901 -13.82342 -13.32586 -13.20914 -13.17967 -12.73570 -12.67586 -12.59632 -12.48111 -12.32822 -11.70660 -11.65410 -11.58462 -11.46752 -11.35403 -11.14384 -10.92629 -9.65653 -9.44952 -8.83248 -7.81843 -6.22301 0.84318 1.03549 1.20720 1.36950 1.42591 2.11281 2.61623 3.11916 3.55398 3.57065 3.62765 3.73184 3.92160 4.25242 4.32796 4.44082 4.47118 4.56281 4.57754 4.67482 4.81896 4.83993 4.85986 4.90640 5.01031 5.04012 5.07430 5.12616 5.25829 5.30067 5.38859 5.42535 5.44407 5.62804 5.69900 5.80608 6.07221 6.26268 6.38624 6.64276 6.72375 6.88943 7.18611 7.48910 8.24820 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.009161 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.339420 B = 3055.773253 C = 4335.715559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.070 0.930 4 C -0.108 4.108 5 C 0.058 3.942 6 H 0.059 0.941 7 C -0.131 4.131 8 N -0.483 5.483 9 C 0.084 3.916 10 C -0.213 4.213 11 C -0.159 4.159 12 C 0.107 3.893 13 N -0.874 5.874 14 C 0.033 3.967 15 C -0.473 4.473 16 H 0.064 0.936 17 C 0.047 3.953 18 N -0.860 5.860 19 Si 0.960 3.040 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.261 1.261 23 C -0.248 4.248 24 C 0.029 3.971 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.392 0.608 36 H 0.396 0.604 37 H 0.287 0.713 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 0.935 -15.945 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.049 4.049 6 H 0.077 0.923 7 C -0.188 4.188 8 N -0.198 5.198 9 C -0.015 4.015 10 C -0.235 4.235 11 C -0.183 4.183 12 C 0.004 3.996 13 N -0.416 5.416 14 C 0.028 3.972 15 C -0.504 4.504 16 H 0.083 0.917 17 C -0.165 4.165 18 N -0.488 5.488 19 Si 0.786 3.214 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.271 4.271 24 C -0.098 4.098 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.220 0.780 36 H 0.225 0.775 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.826 0.399 -15.683 16.148 hybrid contribution 0.071 1.009 0.911 1.362 sum -3.754 1.408 -14.772 15.306 Atomic orbital electron populations 1.21704 0.92390 1.02654 1.02443 1.22407 0.97871 0.98710 0.94401 0.91202 1.22839 0.94399 1.00234 0.97054 1.22919 0.98013 0.98173 0.85776 0.92345 1.21735 1.01094 0.96260 0.99718 1.60741 1.02763 1.52474 1.03841 1.18744 0.91210 0.99579 0.91982 1.20541 0.91109 1.12519 0.99284 1.20308 0.98664 1.07833 0.91524 1.18050 0.87964 1.02417 0.91199 1.41851 1.05333 1.81102 1.13304 1.17420 0.91329 0.95573 0.92912 1.19091 0.99626 1.39840 0.91834 0.91749 1.26608 0.99213 0.94538 0.96189 1.69759 1.26168 1.38149 1.14719 0.85690 0.78643 0.78199 0.78840 1.18851 1.21412 1.18501 1.20490 0.97441 1.15320 0.93851 1.23310 0.92702 0.95640 0.98119 0.93165 0.90246 0.91832 0.89498 0.88429 0.92293 0.89806 0.93343 0.85163 0.85555 0.77973 0.77511 0.90245 0.89223 0.91093 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.13 71.98 0.66 -2.17 16 2 C -0.11 -3.06 3.54 -9.62 -0.03 -3.10 16 3 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 4 C -0.11 -2.41 5.94 31.98 0.19 -2.22 16 5 C 0.06 1.65 2.34 45.39 0.11 1.76 16 6 H 0.06 1.78 6.41 -2.39 -0.02 1.76 16 7 C -0.13 -3.14 9.19 71.99 0.66 -2.48 16 8 N -0.48 -18.15 4.93 -661.67 -3.26 -21.42 16 9 C 0.08 3.68 5.78 38.14 0.22 3.90 16 10 C -0.21 -8.53 8.33 22.56 0.19 -8.34 16 11 C -0.16 -6.42 9.87 22.35 0.22 -6.20 16 12 C 0.11 4.90 6.79 38.97 0.26 5.16 16 13 N -0.87 -33.90 8.97 -50.31 -0.45 -34.35 16 14 C 0.03 1.74 5.15 -21.18 -0.11 1.63 16 15 C -0.47 -26.75 8.91 23.35 0.21 -26.54 16 16 H 0.06 3.79 7.04 -2.91 -0.02 3.77 16 17 C 0.05 2.61 5.41 85.23 0.46 3.07 16 18 N -0.86 -48.91 13.93 21.82 0.30 -48.61 16 19 Si 0.96 45.95 22.60 68.60 1.55 47.50 16 20 H -0.26 -12.10 6.27 99.48 0.62 -11.47 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.26 -12.84 6.80 99.48 0.68 -12.16 16 23 C -0.25 -12.54 5.97 22.81 0.14 -12.40 16 24 C 0.03 1.04 5.76 86.64 0.50 1.54 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 28 H 0.09 1.77 7.95 -2.38 -0.02 1.75 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.30 6.70 -2.39 -0.02 1.29 16 33 H 0.13 4.43 4.94 -2.91 -0.01 4.41 16 34 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.39 15.86 7.16 -92.70 -0.66 15.20 16 36 H 0.40 12.22 8.84 -92.71 -0.82 11.40 16 37 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 38 H 0.09 4.70 3.64 -2.91 -0.01 4.69 16 39 H 0.07 2.53 7.82 -2.39 -0.02 2.51 16 40 H 0.04 1.66 3.31 -2.38 -0.01 1.65 16 Total: -1.00 -63.63 299.86 1.28 -62.35 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.53 Total: 40.92 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 3.67 Total: -46.39 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -3.41 Total: -104.38 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.55 Total: 47.50 kcal Total: -63.63 1.28 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127557569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.051 kcal (2) G-P(sol) polarization free energy of solvation -63.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds