Wall clock time and date at job start Mon Mar 30 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.88280 * 2 1 4 4 C 1.54323 * 109.89014 * 238.96685 * 2 1 3 5 5 C 1.55140 * 103.02074 * 218.30881 * 4 2 1 6 6 H 1.09000 * 110.99264 * 277.52675 * 5 4 2 7 7 C 1.52998 * 110.98719 * 153.74175 * 5 4 2 8 8 C 1.54908 * 101.64963 * 35.65532 * 5 4 2 9 9 N 1.47447 * 109.89253 * 121.19666 * 2 1 3 10 10 C 1.39855 * 110.99493 * 356.15080 * 9 2 1 11 11 C 1.39599 * 119.84174 * 76.05114 * 10 9 2 12 12 C 1.38059 * 120.55176 * 179.97438 * 11 10 9 13 13 C 1.38737 * 120.21906 * 0.02562 * 12 11 10 14 14 N 1.38861 * 120.16393 * 179.97438 * 13 12 11 15 15 C 1.41564 * 119.67369 * 0.02562 * 13 12 11 16 16 C 1.41022 * 120.26800 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00116 * 29.04455 * 16 15 13 18 18 C 1.39885 * 120.00132 * 209.03492 * 16 15 13 19 19 N 1.30902 * 120.00103 * 12.04390 * 18 16 15 20 20 Si 1.86806 * 119.99886 * 192.04128 * 18 16 15 21 21 H 1.48490 * 109.47139 * 90.00314 * 20 18 16 22 22 H 1.48502 * 109.46843 * 210.00228 * 20 18 16 23 23 H 1.48497 * 109.47129 * 329.99978 * 20 18 16 24 24 C 1.38009 * 119.83807 * 255.77821 * 10 9 2 25 25 H 1.08994 * 109.47089 * 173.74421 * 1 2 3 26 26 H 1.09003 * 109.47076 * 293.74285 * 1 2 3 27 27 H 1.09000 * 109.47083 * 53.73915 * 1 2 3 28 28 H 1.08998 * 110.70144 * 99.92654 * 4 2 1 29 29 H 1.09000 * 110.70157 * 336.69655 * 4 2 1 30 30 H 1.09004 * 109.47266 * 60.00305 * 7 5 4 31 31 H 1.09009 * 109.46612 * 180.02562 * 7 5 4 32 32 H 1.08997 * 109.47487 * 299.99938 * 7 5 4 33 33 H 1.08995 * 110.37839 * 81.75872 * 8 5 4 34 34 H 1.09003 * 110.37228 * 204.10013 * 8 5 4 35 35 H 1.08005 * 119.72353 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.89144 * 180.02562 * 12 11 10 37 37 H 0.97002 * 119.99901 * 5.70298 * 14 13 12 38 38 H 0.96997 * 120.00128 * 185.70805 * 14 13 12 39 39 H 0.96996 * 120.00055 * 184.99058 * 19 18 16 40 40 H 1.07996 * 120.11352 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0550 -0.7481 -1.2435 5 6 3.2892 -1.5124 -0.6963 6 1 4.1660 -0.8656 -0.6633 7 6 3.5684 -2.7675 -1.5255 8 6 2.8189 -1.8844 0.7320 9 7 2.0317 -0.7182 1.1860 10 6 0.9771 -1.1169 2.0136 11 6 0.1883 -2.2114 1.6551 12 6 -0.8560 -2.6179 2.4614 13 6 -1.1332 -1.9401 3.6398 14 7 -2.1842 -2.3496 4.4497 15 6 -0.3400 -0.8282 4.0119 16 6 -0.6103 -0.1304 5.2072 17 1 -1.0541 -0.6469 6.0455 18 6 -0.3034 1.2307 5.3072 19 7 0.0105 1.9115 4.2341 20 14 -0.3415 2.0768 6.9722 21 1 0.9981 1.9826 7.6061 22 1 -0.7050 3.5055 6.7932 23 1 -1.3478 1.4151 7.8408 24 6 0.7249 -0.4297 3.1836 25 1 -0.3633 -1.0215 -0.1120 26 1 -0.3633 0.4138 0.9407 27 1 -0.3633 0.6078 -0.8286 28 1 2.3514 -0.0435 -2.0205 29 1 1.3055 -1.4448 -1.6190 30 1 3.7633 -2.4838 -2.5598 31 1 4.4383 -3.2846 -1.1202 32 1 2.7026 -3.4285 -1.4870 33 1 2.1939 -2.7770 0.7054 34 1 3.6772 -2.0404 1.3856 35 1 0.3968 -2.7447 0.7393 36 1 -1.4592 -3.4665 2.1740 37 1 -2.6741 -3.1592 4.2361 38 1 -2.4285 -1.8262 5.2289 39 1 0.2933 2.8360 4.3118 40 1 1.3403 0.4136 3.4601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127558088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:23 Heat of formation + Delta-G solvation = 25.048076 kcal Electronic energy + Delta-G solvation = -20115.959424 eV Core-core repulsion = 17315.828102 eV Total energy + Delta-G solvation = -2800.131321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68805 -37.21784 -33.89803 -33.44874 -31.76549 -30.41973 -29.48130 -27.32765 -25.94196 -24.71741 -24.28642 -21.23476 -20.59190 -19.84967 -18.79583 -16.96788 -16.11457 -15.60452 -15.50077 -14.97208 -14.60109 -13.78355 -13.51548 -13.10025 -13.01956 -12.69009 -12.57584 -12.23360 -11.95247 -11.64127 -11.50487 -11.29699 -11.22564 -11.08745 -11.01854 -10.76803 -10.45722 -10.35901 -10.19192 -10.06128 -9.81341 -9.50563 -9.06801 -8.86672 -7.53169 -7.26374 -6.61293 -6.08008 -4.08999 2.85450 3.15363 3.17794 3.18033 3.26300 4.06444 4.66388 4.77185 4.94086 5.07682 5.27189 5.30878 5.57565 5.72063 5.73512 5.77773 5.86857 6.00993 6.09787 6.13342 6.19888 6.22660 6.26890 6.38679 6.46548 6.47909 6.62802 6.84942 7.06048 7.08700 7.15662 7.29839 7.59323 7.62971 7.74021 7.76550 8.09234 8.22444 8.40360 8.72524 8.91765 8.95667 9.15378 9.22120 10.41785 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.006412 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.863135 B = 4365.443496 C = 4974.544903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.075 0.925 4 C -0.132 4.132 5 C -0.105 4.105 6 H 0.078 0.922 7 C -0.139 4.139 8 C 0.048 3.952 9 N -0.480 5.480 10 C 0.052 3.948 11 C -0.209 4.209 12 C -0.177 4.177 13 C 0.117 3.883 14 N -0.885 5.885 15 C 0.064 3.936 16 C -0.466 4.466 17 H 0.070 0.930 18 C 0.076 3.924 19 N -0.804 5.804 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.267 1.267 24 C -0.103 4.103 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.375 0.625 38 H 0.391 0.609 39 H 0.276 0.724 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -4.308 -6.893 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.171 4.171 5 C -0.124 4.124 6 H 0.096 0.904 7 C -0.197 4.197 8 C -0.079 4.079 9 N -0.201 5.201 10 C -0.043 4.043 11 C -0.230 4.230 12 C -0.202 4.202 13 C 0.015 3.985 14 N -0.426 5.426 15 C 0.059 3.941 16 C -0.498 4.498 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.432 5.432 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.191 1.191 24 C -0.124 4.124 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.201 0.799 38 H 0.220 0.780 39 H 0.087 0.913 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.074 -3.658 -6.720 8.245 hybrid contribution -0.841 -0.177 0.426 0.959 sum 2.233 -3.835 -6.294 7.701 Atomic orbital electron populations 1.22418 0.95357 1.01957 1.02329 1.22304 0.94537 0.97935 0.87987 0.90682 1.22959 0.97150 0.99024 0.97918 1.22294 0.98100 0.96677 0.95334 0.90367 1.21700 1.01427 0.97256 0.99276 1.23186 0.97513 0.93425 0.93816 1.61313 1.21703 1.22098 1.14988 1.18320 0.93711 0.96931 0.95322 1.20475 1.00624 1.01773 1.00167 1.19822 1.01713 1.02223 0.96395 1.18024 0.90594 0.98423 0.91439 1.41917 1.37931 1.30180 1.32620 1.17162 0.90971 0.91535 0.94468 1.19090 1.38304 0.93393 0.98989 0.91225 1.25699 0.93517 0.97415 0.97294 1.69812 1.34453 1.10113 1.28785 0.86422 0.79314 0.78521 0.83016 1.19644 1.20632 1.19078 1.20869 0.97305 1.00911 0.93339 0.92026 0.90330 0.94225 0.91694 0.91701 0.92908 0.92741 0.92799 0.92813 0.91232 0.89743 0.89797 0.79949 0.78020 0.91283 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 7.76 37.16 0.29 -2.84 16 2 C 0.08 1.44 3.96 -66.72 -0.26 1.18 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.13 -1.93 5.94 -24.91 -0.15 -2.08 16 5 C -0.10 -1.47 3.64 -88.48 -0.32 -1.79 16 6 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 7 C -0.14 -1.60 9.31 37.16 0.35 -1.25 16 8 C 0.05 0.83 5.98 -2.30 -0.01 0.81 16 9 N -0.48 -9.79 5.16 -160.46 -0.83 -10.62 16 10 C 0.05 1.19 3.16 -83.77 -0.27 0.92 16 11 C -0.21 -4.56 6.33 -39.14 -0.25 -4.81 16 12 C -0.18 -3.94 9.87 -39.46 -0.39 -4.33 16 13 C 0.12 2.75 6.79 -83.23 -0.56 2.19 16 14 N -0.89 -17.63 8.97 32.75 0.29 -17.33 16 15 C 0.06 1.67 5.55 -106.66 -0.59 1.08 16 16 C -0.47 -12.12 8.38 -37.91 -0.32 -12.44 16 17 H 0.07 1.73 6.88 -52.49 -0.36 1.37 16 18 C 0.08 1.92 5.22 -17.33 -0.09 1.83 16 19 N -0.80 -21.10 10.95 55.54 0.61 -20.49 16 20 Si 0.90 19.07 29.58 -169.99 -5.03 14.04 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.10 -2.66 8.13 -38.75 -0.32 -2.98 16 25 H 0.06 1.19 5.72 -51.93 -0.30 0.90 16 26 H 0.08 1.81 6.78 -51.93 -0.35 1.46 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.05 0.96 5.54 -51.93 -0.29 0.67 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.72 6.42 -52.48 -0.34 1.38 16 36 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.38 6.28 8.84 -40.82 -0.36 5.92 16 38 H 0.39 7.70 7.17 -40.82 -0.29 7.41 16 39 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 40 H 0.12 3.45 6.31 -52.49 -0.33 3.12 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -27.12 308.72 -9.15 -36.27 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -5.95 Total: 17.98 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.90 Total: -24.51 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.07 Total: -48.44 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.12 -9.15 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127558088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.320 kcal (2) G-P(sol) polarization free energy of solvation -27.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds