Wall clock time and date at job start Mon Mar 30 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.88280 * 2 1 4 4 C 1.54323 * 109.89014 * 238.96685 * 2 1 3 5 5 C 1.55140 * 103.02074 * 218.30881 * 4 2 1 6 6 H 1.09000 * 110.99264 * 277.52675 * 5 4 2 7 7 C 1.52998 * 110.98719 * 153.74175 * 5 4 2 8 8 C 1.54908 * 101.64963 * 35.65532 * 5 4 2 9 9 N 1.47447 * 109.89253 * 121.19666 * 2 1 3 10 10 C 1.39855 * 110.99493 * 356.15080 * 9 2 1 11 11 C 1.39599 * 119.84174 * 76.05114 * 10 9 2 12 12 C 1.38059 * 120.55176 * 179.97438 * 11 10 9 13 13 C 1.38737 * 120.21906 * 0.02562 * 12 11 10 14 14 N 1.38861 * 120.16393 * 179.97438 * 13 12 11 15 15 C 1.41564 * 119.67369 * 0.02562 * 13 12 11 16 16 C 1.41022 * 120.26800 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00116 * 29.04455 * 16 15 13 18 18 C 1.39885 * 120.00132 * 209.03492 * 16 15 13 19 19 N 1.30902 * 120.00103 * 12.04390 * 18 16 15 20 20 Si 1.86806 * 119.99886 * 192.04128 * 18 16 15 21 21 H 1.48490 * 109.47139 * 90.00314 * 20 18 16 22 22 H 1.48502 * 109.46843 * 210.00228 * 20 18 16 23 23 H 1.48497 * 109.47129 * 329.99978 * 20 18 16 24 24 C 1.38009 * 119.83807 * 255.77821 * 10 9 2 25 25 H 1.08994 * 109.47089 * 173.74421 * 1 2 3 26 26 H 1.09003 * 109.47076 * 293.74285 * 1 2 3 27 27 H 1.09000 * 109.47083 * 53.73915 * 1 2 3 28 28 H 1.08998 * 110.70144 * 99.92654 * 4 2 1 29 29 H 1.09000 * 110.70157 * 336.69655 * 4 2 1 30 30 H 1.09004 * 109.47266 * 60.00305 * 7 5 4 31 31 H 1.09009 * 109.46612 * 180.02562 * 7 5 4 32 32 H 1.08997 * 109.47487 * 299.99938 * 7 5 4 33 33 H 1.08995 * 110.37839 * 81.75872 * 8 5 4 34 34 H 1.09003 * 110.37228 * 204.10013 * 8 5 4 35 35 H 1.08005 * 119.72353 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.89144 * 180.02562 * 12 11 10 37 37 H 0.97002 * 119.99901 * 5.70298 * 14 13 12 38 38 H 0.96997 * 120.00128 * 185.70805 * 14 13 12 39 39 H 0.96996 * 120.00055 * 184.99058 * 19 18 16 40 40 H 1.07996 * 120.11352 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0550 -0.7481 -1.2435 5 6 3.2892 -1.5124 -0.6963 6 1 4.1660 -0.8656 -0.6633 7 6 3.5684 -2.7675 -1.5255 8 6 2.8189 -1.8844 0.7320 9 7 2.0317 -0.7182 1.1860 10 6 0.9771 -1.1169 2.0136 11 6 0.1883 -2.2114 1.6551 12 6 -0.8560 -2.6179 2.4614 13 6 -1.1332 -1.9401 3.6398 14 7 -2.1842 -2.3496 4.4497 15 6 -0.3400 -0.8282 4.0119 16 6 -0.6103 -0.1304 5.2072 17 1 -1.0541 -0.6469 6.0455 18 6 -0.3034 1.2307 5.3072 19 7 0.0105 1.9115 4.2341 20 14 -0.3415 2.0768 6.9722 21 1 0.9981 1.9826 7.6061 22 1 -0.7050 3.5055 6.7932 23 1 -1.3478 1.4151 7.8408 24 6 0.7249 -0.4297 3.1836 25 1 -0.3633 -1.0215 -0.1120 26 1 -0.3633 0.4138 0.9407 27 1 -0.3633 0.6078 -0.8286 28 1 2.3514 -0.0435 -2.0205 29 1 1.3055 -1.4448 -1.6190 30 1 3.7633 -2.4838 -2.5598 31 1 4.4383 -3.2846 -1.1202 32 1 2.7026 -3.4285 -1.4870 33 1 2.1939 -2.7770 0.7054 34 1 3.6772 -2.0404 1.3856 35 1 0.3968 -2.7447 0.7393 36 1 -1.4592 -3.4665 2.1740 37 1 -2.6741 -3.1592 4.2361 38 1 -2.4285 -1.8262 5.2289 39 1 0.2933 2.8360 4.3118 40 1 1.3403 0.4136 3.4601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127558088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:22 Heat of formation + Delta-G solvation = 8.910869 kcal Electronic energy + Delta-G solvation = -20116.659185 eV Core-core repulsion = 17315.828102 eV Total energy + Delta-G solvation = -2800.831083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22844 -38.90048 -35.45121 -35.24428 -33.21751 -31.94114 -31.35946 -28.80040 -27.50523 -26.42921 -25.70823 -23.03608 -22.20932 -21.06761 -20.45336 -18.79078 -17.74663 -17.25603 -17.06984 -16.60617 -16.30063 -15.19629 -14.90984 -14.74119 -14.60359 -14.22817 -13.90162 -13.76939 -13.45179 -13.18728 -13.10890 -12.88741 -12.78217 -12.72162 -12.50208 -12.24280 -12.10294 -11.74901 -11.58942 -11.48078 -11.30747 -11.26961 -10.94533 -10.58228 -9.16749 -9.08231 -8.49207 -7.85097 -6.03258 1.06125 1.32644 1.41209 1.51951 1.53940 2.28587 2.86715 3.27866 3.65280 3.71959 3.83914 3.90084 4.03670 4.32985 4.50898 4.53851 4.57309 4.67249 4.71256 4.76451 4.83097 4.89865 4.97354 5.08961 5.18037 5.21517 5.24939 5.30633 5.38986 5.39599 5.45619 5.56853 5.74569 5.85151 5.97841 6.19403 6.25723 6.42483 6.51550 6.95794 7.04620 7.13424 7.35675 7.56666 8.54903 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.006412 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.863135 B = 4365.443496 C = 4974.544903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.066 0.934 4 C -0.121 4.121 5 C -0.094 4.094 6 H 0.083 0.917 7 C -0.133 4.133 8 C 0.044 3.956 9 N -0.504 5.504 10 C 0.057 3.943 11 C -0.198 4.198 12 C -0.184 4.184 13 C 0.109 3.891 14 N -0.874 5.874 15 C 0.029 3.971 16 C -0.493 4.493 17 H 0.073 0.927 18 C 0.032 3.968 19 N -0.840 5.840 20 Si 0.972 3.028 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.257 1.257 24 C -0.128 4.128 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.393 0.607 38 H 0.392 0.608 39 H 0.278 0.722 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -5.561 -8.359 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 H 0.084 0.916 4 C -0.159 4.159 5 C -0.113 4.113 6 H 0.101 0.899 7 C -0.191 4.191 8 C -0.083 4.083 9 N -0.225 5.225 10 C -0.038 4.038 11 C -0.219 4.219 12 C -0.208 4.208 13 C 0.007 3.993 14 N -0.416 5.416 15 C 0.023 3.977 16 C -0.525 4.525 17 H 0.091 0.909 18 C -0.180 4.180 19 N -0.468 5.468 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.149 4.149 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.221 0.779 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.203 -4.945 -8.188 10.088 hybrid contribution -0.875 0.152 0.798 1.194 sum 2.329 -4.792 -7.391 9.111 Atomic orbital electron populations 1.22263 0.96205 1.01795 1.00636 1.22359 0.93797 0.97943 0.89120 0.91627 1.22894 0.97325 0.99217 0.96462 1.22267 0.97846 0.97965 0.93268 0.89870 1.21663 1.01787 0.95765 0.99854 1.23263 0.96821 0.92137 0.96040 1.61213 1.21396 1.23745 1.16175 1.18342 0.94224 0.96564 0.94691 1.20707 0.99713 1.00957 1.00537 1.20169 1.02032 1.02821 0.95809 1.18179 0.91053 0.97807 0.92304 1.41808 1.37034 1.30755 1.32035 1.17486 0.91920 0.93087 0.95176 1.19333 1.39581 0.94137 0.99421 0.90918 1.26507 0.92913 0.97840 1.00718 1.69924 1.35741 1.10372 1.30805 0.85348 0.79298 0.77369 0.78515 1.19573 1.20244 1.18078 1.20746 0.97880 1.01039 0.95281 0.92129 0.95095 0.91875 0.89243 0.91008 0.90923 0.91825 0.92928 0.93166 0.91703 0.87572 0.86942 0.77904 0.77918 0.91220 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 7.76 71.98 0.56 -5.21 16 2 C 0.07 2.66 3.96 45.26 0.18 2.84 16 3 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.12 -3.17 5.94 31.78 0.19 -2.99 16 5 C -0.09 -2.38 3.64 -9.41 -0.03 -2.42 16 6 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 7 C -0.13 -2.56 9.31 71.98 0.67 -1.89 16 8 C 0.04 1.47 5.98 86.77 0.52 1.99 16 9 N -0.50 -20.68 5.16 -661.56 -3.41 -24.09 16 10 C 0.06 2.66 3.16 38.14 0.12 2.78 16 11 C -0.20 -8.47 6.33 22.56 0.14 -8.32 16 12 C -0.18 -7.96 9.87 22.35 0.22 -7.74 16 13 C 0.11 5.17 6.79 38.97 0.26 5.43 16 14 N -0.87 -34.23 8.97 -50.31 -0.45 -34.68 16 15 C 0.03 1.55 5.55 -21.18 -0.12 1.43 16 16 C -0.49 -26.55 8.38 23.35 0.20 -26.35 16 17 H 0.07 3.71 6.88 -2.91 -0.02 3.69 16 18 C 0.03 1.66 5.22 85.23 0.45 2.11 16 19 N -0.84 -46.36 10.95 21.82 0.24 -46.12 16 20 Si 0.97 40.22 29.58 68.60 2.03 42.24 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C -0.13 -6.94 8.13 22.81 0.19 -6.76 16 25 H 0.06 2.28 5.72 -2.39 -0.01 2.26 16 26 H 0.03 1.46 6.78 -2.39 -0.02 1.44 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.05 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.05 1.70 5.54 -2.39 -0.01 1.68 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 4.06 6.42 -2.91 -0.02 4.04 16 36 H 0.11 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.39 12.49 8.84 -92.71 -0.82 11.68 16 38 H 0.39 15.37 7.17 -92.71 -0.66 14.70 16 39 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 40 H 0.09 5.48 6.31 -2.91 -0.02 5.46 16 Total: -1.00 -61.29 308.72 1.51 -59.78 By element: Atomic # 1 Polarization: 48.40 SS G_CDS: -0.43 Total: 47.97 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 3.54 Total: -45.10 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.62 Total: -104.89 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -61.29 1.51 -59.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127558088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.693 kcal (2) G-P(sol) polarization free energy of solvation -61.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds