Wall clock time and date at job start Mon Mar 30 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.67143 * 2 1 4 4 C 1.54892 * 110.75476 * 236.76534 * 2 1 3 5 5 C 1.54260 * 104.19457 * 203.74700 * 4 2 1 6 6 C 1.53876 * 106.60202 * 23.60506 * 5 4 2 7 7 H 1.08999 * 110.03645 * 240.66862 * 6 5 4 8 8 N 1.46503 * 110.02905 * 119.28585 * 6 5 4 9 9 C 1.39847 * 119.99971 * 86.45993 * 8 6 5 10 10 C 1.39602 * 119.84230 * 359.97438 * 9 8 6 11 11 C 1.38051 * 120.55385 * 180.02562 * 10 9 8 12 12 C 1.38736 * 120.22142 * 0.02562 * 11 10 9 13 13 N 1.38862 * 120.16678 * 180.02562 * 12 11 10 14 14 C 1.41565 * 119.67403 * 0.02562 * 12 11 10 15 15 C 1.41024 * 120.26838 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99820 * 329.44543 * 15 14 12 17 17 C 1.39895 * 119.99681 * 149.72068 * 15 14 12 18 18 N 1.30892 * 119.99877 * 162.22298 * 17 15 14 19 19 Si 1.86798 * 120.00019 * 342.22058 * 17 15 14 20 20 H 1.48499 * 109.46953 * 95.38034 * 19 17 15 21 21 H 1.48500 * 109.47217 * 215.37747 * 19 17 15 22 22 H 1.48504 * 109.47286 * 335.38394 * 19 17 15 23 23 C 1.38006 * 119.84144 * 180.30089 * 9 8 6 24 24 C 1.54263 * 106.59643 * 0.02562 * 6 5 4 25 25 H 1.08999 * 109.47776 * 181.78129 * 1 2 3 26 26 H 1.09004 * 109.47266 * 301.78383 * 1 2 3 27 27 H 1.09009 * 109.47203 * 61.77836 * 1 2 3 28 28 H 1.08995 * 110.48625 * 85.06789 * 4 2 1 29 29 H 1.09000 * 110.48564 * 322.41828 * 4 2 1 30 30 H 1.09004 * 110.03084 * 264.32705 * 5 4 2 31 31 H 1.09001 * 110.03934 * 142.89258 * 5 4 2 32 32 H 0.97004 * 120.00232 * 266.45657 * 8 6 5 33 33 H 1.08001 * 119.71904 * 0.05005 * 10 9 8 34 34 H 1.08005 * 119.89138 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00680 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99807 * 359.97438 * 13 12 11 37 37 H 0.96996 * 120.00412 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.11514 * 359.97438 * 23 9 8 39 39 H 1.09004 * 110.48798 * 95.06742 * 24 6 5 40 40 H 1.09002 * 110.48814 * 217.70741 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4930 -1.2256 -0.7715 6 6 3.4930 -1.2282 0.7672 7 1 4.2332 -0.5211 1.1418 8 7 3.7871 -2.5737 1.2666 9 6 5.1138 -2.9825 1.4351 10 6 6.1555 -2.1060 1.1258 11 6 7.4705 -2.4945 1.2861 12 6 7.7711 -3.7643 1.7571 13 7 9.0942 -4.1537 1.9184 14 6 6.7222 -4.6612 2.0727 15 6 7.0135 -5.9552 2.5519 16 1 7.9190 -6.4550 2.2410 17 6 6.1267 -6.5935 3.4255 18 7 6.1973 -7.8890 3.5985 19 14 4.8419 -5.5971 4.3450 20 1 3.5597 -5.6316 3.5966 21 1 4.6411 -6.1761 5.6977 22 1 5.3032 -4.1912 4.4718 23 6 5.3872 -4.2529 1.8999 24 6 2.0787 -0.7986 1.2086 25 1 -0.3634 -1.0271 0.0319 26 1 -0.3634 0.5413 0.8736 27 1 -0.3634 0.4860 -0.9056 28 1 2.1320 -0.1555 -2.0934 29 1 1.4574 -1.6674 -1.4084 30 1 4.2325 -0.5165 -1.1436 31 1 3.7119 -2.2253 -1.1466 32 1 3.0616 -3.1810 1.4805 33 1 5.9306 -1.1156 0.7585 34 1 8.2680 -1.8078 1.0431 35 1 9.3017 -5.0419 2.2483 36 1 9.8110 -3.5374 1.7011 37 1 5.5827 -8.3317 4.2044 38 1 4.5789 -4.9300 2.1335 39 1 1.4575 -1.6730 1.4026 40 1 2.1315 -0.1634 2.0929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127563701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:22 Heat of formation + Delta-G solvation = 3.650896 kcal Electronic energy + Delta-G solvation = -19401.310477 eV Core-core repulsion = 16600.251304 eV Total energy + Delta-G solvation = -2801.059173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.96959 -37.72419 -34.80400 -33.36198 -32.01669 -30.21947 -30.13287 -28.34029 -26.06067 -24.73960 -24.30579 -21.64080 -20.32511 -20.01656 -19.25952 -17.18198 -16.40230 -16.01448 -15.78004 -15.07324 -14.88429 -14.43472 -13.71771 -13.41520 -13.18833 -13.01973 -12.75539 -12.44169 -12.30972 -12.01011 -11.78155 -11.49521 -11.40611 -11.01471 -10.88918 -10.77591 -10.68786 -10.54714 -10.47779 -10.27818 -9.95127 -9.68277 -9.49626 -8.99856 -7.90255 -7.46564 -6.78064 -5.76658 -4.17373 2.79532 3.05452 3.22350 3.39441 3.46395 4.13673 4.22746 4.60898 4.67071 4.73552 4.88952 5.30775 5.34092 5.42878 5.47548 5.55835 5.58722 5.63533 5.68383 5.83516 5.91817 5.95248 6.07009 6.14637 6.17222 6.31235 6.40200 6.43533 6.52741 6.77223 6.88733 7.21495 7.32573 7.46028 7.58107 7.78098 8.01792 8.33703 8.50730 8.62450 8.72571 8.92302 9.10817 9.17002 10.25533 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.005826 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.199406 B = 4804.778001 C = 5684.147814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.141 4.141 6 C 0.158 3.842 7 H 0.075 0.925 8 N -0.757 5.757 9 C 0.198 3.802 10 C -0.255 4.255 11 C -0.144 4.144 12 C 0.097 3.903 13 N -0.886 5.886 14 C 0.081 3.919 15 C -0.452 4.452 16 H 0.086 0.914 17 C 0.085 3.915 18 N -0.824 5.824 19 Si 0.916 3.084 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.245 1.245 23 C -0.273 4.273 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.386 0.614 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.393 0.607 36 H 0.376 0.624 37 H 0.280 0.720 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 12.365 -4.767 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.180 4.180 6 C 0.051 3.949 7 H 0.093 0.907 8 N -0.390 5.390 9 C 0.099 3.901 10 C -0.279 4.279 11 C -0.169 4.169 12 C -0.005 4.005 13 N -0.428 5.428 14 C 0.075 3.925 15 C -0.482 4.482 16 H 0.104 0.896 17 C -0.132 4.132 18 N -0.449 5.449 19 Si 0.743 3.257 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.169 1.169 23 C -0.297 4.297 24 C -0.164 4.164 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.219 0.781 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.221 0.779 36 H 0.201 0.799 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.554 12.273 -4.715 15.163 hybrid contribution -0.532 -0.094 0.538 0.762 sum -8.086 12.179 -4.177 15.204 Atomic orbital electron populations 1.21759 0.95192 1.01758 1.01310 1.22070 0.95166 0.99102 0.95244 0.90680 1.22411 0.96694 0.99337 0.97141 1.22736 0.96120 1.02172 0.96979 1.21279 0.95468 0.85743 0.92379 0.90652 1.44616 1.04632 1.13976 1.75814 1.17357 0.83141 0.93020 0.96565 1.19635 0.91395 0.98869 1.17962 1.19796 0.95248 0.94908 1.06938 1.17754 0.84869 0.93162 1.04667 1.41862 1.03547 1.18510 1.78904 1.17125 0.89664 0.92336 0.93325 1.19087 1.07088 0.97768 1.24223 0.89617 1.26039 0.96624 0.94526 0.95980 1.69732 1.34832 1.09505 1.30881 0.86231 0.80227 0.82080 0.77116 1.20314 1.22664 1.16858 1.20216 0.95994 0.96033 1.17468 1.22707 0.96128 0.99874 0.97694 0.92675 0.92857 0.92847 0.92166 0.91836 0.92041 0.90883 0.78066 0.89063 0.89243 0.77872 0.79850 0.90938 0.88428 0.91237 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.27 37.16 0.34 -0.92 16 2 C -0.10 -0.99 3.50 -88.62 -0.31 -1.30 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -1.30 6.28 -25.07 -0.16 -1.46 16 5 C -0.14 -1.91 6.59 -25.62 -0.17 -2.08 16 6 C 0.16 2.33 2.89 -66.81 -0.19 2.14 16 7 H 0.08 1.17 6.50 -51.93 -0.34 0.83 16 8 N -0.76 -13.76 5.17 -51.09 -0.26 -14.03 16 9 C 0.20 4.37 6.64 -83.78 -0.56 3.82 16 10 C -0.25 -5.45 9.21 -39.14 -0.36 -5.81 16 11 C -0.14 -3.14 9.86 -39.47 -0.39 -3.53 16 12 C 0.10 2.28 6.79 -83.23 -0.56 1.71 16 13 N -0.89 -17.81 8.98 32.75 0.29 -17.51 16 14 C 0.08 2.09 5.10 -106.65 -0.54 1.55 16 15 C -0.45 -12.29 8.90 -37.91 -0.34 -12.63 16 16 H 0.09 2.40 7.03 -52.49 -0.37 2.03 16 17 C 0.08 2.28 5.40 -17.33 -0.09 2.19 16 18 N -0.82 -22.55 13.93 55.55 0.77 -21.78 16 19 Si 0.92 21.84 24.52 -169.99 -4.17 17.67 16 20 H -0.28 -6.40 6.72 56.52 0.38 -6.02 16 21 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.25 -6.08 6.86 56.52 0.39 -5.70 16 23 C -0.27 -6.73 6.98 -38.75 -0.27 -7.00 16 24 C -0.13 -1.52 5.97 -25.06 -0.15 -1.67 16 25 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 32 H 0.39 6.75 8.34 -40.82 -0.34 6.41 16 33 H 0.09 1.76 6.22 -52.49 -0.33 1.43 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.39 7.97 7.13 -40.82 -0.29 7.68 16 36 H 0.38 6.30 8.83 -40.82 -0.36 5.94 16 37 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 38 H 0.10 2.44 4.79 -52.49 -0.25 2.19 16 39 H 0.07 0.84 7.62 -51.93 -0.40 0.45 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -28.44 312.43 -8.46 -36.90 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -6.05 Total: 19.04 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.75 Total: -24.99 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.80 Total: -53.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.17 Total: 17.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.44 -8.46 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127563701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.547 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds