Wall clock time and date at job start Mon Mar 30 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.67143 * 2 1 4 4 C 1.54892 * 110.75476 * 236.76534 * 2 1 3 5 5 C 1.54260 * 104.19457 * 203.74700 * 4 2 1 6 6 C 1.53876 * 106.60202 * 23.60506 * 5 4 2 7 7 H 1.08999 * 110.03645 * 240.66862 * 6 5 4 8 8 N 1.46503 * 110.02905 * 119.28585 * 6 5 4 9 9 C 1.39847 * 119.99971 * 86.45993 * 8 6 5 10 10 C 1.39602 * 119.84230 * 359.97438 * 9 8 6 11 11 C 1.38051 * 120.55385 * 180.02562 * 10 9 8 12 12 C 1.38736 * 120.22142 * 0.02562 * 11 10 9 13 13 N 1.38862 * 120.16678 * 180.02562 * 12 11 10 14 14 C 1.41565 * 119.67403 * 0.02562 * 12 11 10 15 15 C 1.41024 * 120.26838 * 179.97438 * 14 12 11 16 16 H 1.07995 * 119.99820 * 329.44543 * 15 14 12 17 17 C 1.39895 * 119.99681 * 149.72068 * 15 14 12 18 18 N 1.30892 * 119.99877 * 162.22298 * 17 15 14 19 19 Si 1.86798 * 120.00019 * 342.22058 * 17 15 14 20 20 H 1.48499 * 109.46953 * 95.38034 * 19 17 15 21 21 H 1.48500 * 109.47217 * 215.37747 * 19 17 15 22 22 H 1.48504 * 109.47286 * 335.38394 * 19 17 15 23 23 C 1.38006 * 119.84144 * 180.30089 * 9 8 6 24 24 C 1.54263 * 106.59643 * 0.02562 * 6 5 4 25 25 H 1.08999 * 109.47776 * 181.78129 * 1 2 3 26 26 H 1.09004 * 109.47266 * 301.78383 * 1 2 3 27 27 H 1.09009 * 109.47203 * 61.77836 * 1 2 3 28 28 H 1.08995 * 110.48625 * 85.06789 * 4 2 1 29 29 H 1.09000 * 110.48564 * 322.41828 * 4 2 1 30 30 H 1.09004 * 110.03084 * 264.32705 * 5 4 2 31 31 H 1.09001 * 110.03934 * 142.89258 * 5 4 2 32 32 H 0.97004 * 120.00232 * 266.45657 * 8 6 5 33 33 H 1.08001 * 119.71904 * 0.05005 * 10 9 8 34 34 H 1.08005 * 119.89138 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00680 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99807 * 359.97438 * 13 12 11 37 37 H 0.96996 * 120.00412 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.11514 * 359.97438 * 23 9 8 39 39 H 1.09004 * 110.48798 * 95.06742 * 24 6 5 40 40 H 1.09002 * 110.48814 * 217.70741 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4930 -1.2256 -0.7715 6 6 3.4930 -1.2282 0.7672 7 1 4.2332 -0.5211 1.1418 8 7 3.7871 -2.5737 1.2666 9 6 5.1138 -2.9825 1.4351 10 6 6.1555 -2.1060 1.1258 11 6 7.4705 -2.4945 1.2861 12 6 7.7711 -3.7643 1.7571 13 7 9.0942 -4.1537 1.9184 14 6 6.7222 -4.6612 2.0727 15 6 7.0135 -5.9552 2.5519 16 1 7.9190 -6.4550 2.2410 17 6 6.1267 -6.5935 3.4255 18 7 6.1973 -7.8890 3.5985 19 14 4.8419 -5.5971 4.3450 20 1 3.5597 -5.6316 3.5966 21 1 4.6411 -6.1761 5.6977 22 1 5.3032 -4.1912 4.4718 23 6 5.3872 -4.2529 1.8999 24 6 2.0787 -0.7986 1.2086 25 1 -0.3634 -1.0271 0.0319 26 1 -0.3634 0.5413 0.8736 27 1 -0.3634 0.4860 -0.9056 28 1 2.1320 -0.1555 -2.0934 29 1 1.4574 -1.6674 -1.4084 30 1 4.2325 -0.5165 -1.1436 31 1 3.7119 -2.2253 -1.1466 32 1 3.0616 -3.1810 1.4805 33 1 5.9306 -1.1156 0.7585 34 1 8.2680 -1.8078 1.0431 35 1 9.3017 -5.0419 2.2483 36 1 9.8110 -3.5374 1.7011 37 1 5.5827 -8.3317 4.2044 38 1 4.5789 -4.9300 2.1335 39 1 1.4575 -1.6730 1.4026 40 1 2.1315 -0.1634 2.0929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127563701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:22 Heat of formation + Delta-G solvation = -13.874975 kcal Electronic energy + Delta-G solvation = -19402.070455 eV Core-core repulsion = 16600.251304 eV Total energy + Delta-G solvation = -2801.819152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33282 -39.18918 -36.28910 -35.28966 -33.47495 -32.06705 -31.24042 -29.53139 -27.55909 -26.51889 -25.39676 -23.41766 -21.79344 -21.02148 -20.63210 -19.02351 -18.06037 -17.60339 -17.01483 -16.63867 -16.40371 -16.01705 -15.02193 -14.70908 -14.58827 -14.40316 -14.14859 -13.90417 -13.72434 -13.49726 -13.22373 -13.09945 -12.76525 -12.60198 -12.41286 -12.13103 -11.81240 -11.75545 -11.66615 -11.42629 -11.37736 -11.30624 -11.25719 -10.90415 -9.46910 -9.35379 -8.77818 -7.48517 -6.15243 0.92593 1.20935 1.28533 1.52965 1.54558 2.19812 2.75353 2.86255 3.65499 3.69418 3.71937 3.77941 3.99735 4.37251 4.41899 4.52973 4.58404 4.64118 4.71699 4.72568 4.75146 4.93765 4.95042 5.05423 5.11190 5.13091 5.20345 5.23952 5.37132 5.41248 5.42536 5.52328 5.58159 5.70822 5.81217 6.00545 6.22008 6.35072 6.68362 6.90507 6.98057 7.14776 7.31882 7.58694 8.31162 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.005826 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.199406 B = 4804.778001 C = 5684.147814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.086 0.914 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.151 3.849 7 H 0.072 0.928 8 N -0.754 5.754 9 C 0.193 3.807 10 C -0.243 4.243 11 C -0.143 4.143 12 C 0.082 3.918 13 N -0.878 5.878 14 C 0.051 3.949 15 C -0.476 4.476 16 H 0.061 0.939 17 C 0.048 3.952 18 N -0.864 5.864 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.260 1.260 23 C -0.284 4.284 24 C -0.122 4.122 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.388 0.612 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.390 0.610 36 H 0.394 0.606 37 H 0.286 0.714 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 15.517 -5.513 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.105 0.895 4 C -0.151 4.151 5 C -0.178 4.178 6 C 0.046 3.954 7 H 0.090 0.910 8 N -0.386 5.386 9 C 0.091 3.909 10 C -0.267 4.267 11 C -0.168 4.168 12 C -0.021 4.021 13 N -0.421 5.421 14 C 0.046 3.954 15 C -0.507 4.507 16 H 0.079 0.921 17 C -0.164 4.164 18 N -0.493 5.493 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.185 1.185 23 C -0.308 4.308 24 C -0.160 4.160 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.222 0.778 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.218 0.782 36 H 0.222 0.778 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.869 15.454 -5.479 18.642 hybrid contribution -0.095 -0.877 0.625 1.081 sum -8.964 14.577 -4.854 17.788 Atomic orbital electron populations 1.21740 0.93987 1.01799 1.02295 1.22051 0.96099 0.99111 0.93537 0.89534 1.22386 0.94865 0.99665 0.98162 1.22666 0.98147 1.01025 0.95919 1.21542 0.97081 0.83650 0.93159 0.91031 1.44753 1.03208 1.15424 1.75225 1.17463 0.85196 0.92295 0.95923 1.20046 0.91116 0.99703 1.15842 1.20193 0.96440 0.94580 1.05570 1.17966 0.85576 0.93633 1.04885 1.41778 1.03101 1.18775 1.78475 1.17299 0.91009 0.92411 0.94691 1.19097 1.06866 0.98953 1.25759 0.92068 1.26606 0.98165 0.95163 0.96456 1.69765 1.36525 1.10423 1.32564 0.85422 0.78667 0.79850 0.76602 1.19436 1.21612 1.18463 1.20306 0.95452 0.97132 1.17935 1.22694 0.94301 1.00182 0.98870 0.93127 0.92125 0.91686 0.90555 0.92147 0.91335 0.93332 0.77837 0.86348 0.86082 0.78208 0.77807 0.90348 0.89434 0.91468 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.27 71.98 0.67 -1.35 16 2 C -0.09 -1.51 3.50 -9.50 -0.03 -1.54 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -2.15 6.28 31.67 0.20 -1.95 16 5 C -0.14 -3.41 6.59 31.32 0.21 -3.20 16 6 C 0.15 4.06 2.89 45.71 0.13 4.20 16 7 H 0.07 1.99 6.50 -2.39 -0.02 1.98 16 8 N -0.75 -26.16 5.17 -315.55 -1.63 -27.79 16 9 C 0.19 8.23 6.64 38.14 0.25 8.48 16 10 C -0.24 -9.75 9.21 22.55 0.21 -9.54 16 11 C -0.14 -5.88 9.86 22.34 0.22 -5.65 16 12 C 0.08 3.80 6.79 38.97 0.26 4.06 16 13 N -0.88 -34.89 8.98 -50.31 -0.45 -35.35 16 14 C 0.05 2.68 5.10 -21.18 -0.11 2.58 16 15 C -0.48 -26.91 8.90 23.35 0.21 -26.71 16 16 H 0.06 3.63 7.03 -2.91 -0.02 3.61 16 17 C 0.05 2.66 5.40 85.23 0.46 3.13 16 18 N -0.86 -49.10 13.93 21.82 0.30 -48.80 16 19 Si 0.97 46.00 24.52 68.60 1.68 47.69 16 20 H -0.27 -12.18 6.72 99.48 0.67 -11.51 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.26 -12.85 6.86 99.48 0.68 -12.17 16 23 C -0.28 -14.02 6.98 22.81 0.16 -13.86 16 24 C -0.12 -2.59 5.97 31.67 0.19 -2.40 16 25 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.05 1.44 7.92 -2.39 -0.02 1.42 16 32 H 0.39 13.10 8.34 -92.71 -0.77 12.32 16 33 H 0.12 4.09 6.22 -2.91 -0.02 4.07 16 34 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.39 16.16 7.13 -92.71 -0.66 15.50 16 36 H 0.39 12.58 8.83 -92.71 -0.82 11.76 16 37 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 38 H 0.09 4.42 4.79 -2.91 -0.01 4.41 16 39 H 0.07 1.47 7.62 -2.38 -0.02 1.45 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.95 312.43 1.68 -60.27 By element: Atomic # 1 Polarization: 49.00 SS G_CDS: -1.25 Total: 47.75 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 3.03 Total: -43.78 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -1.78 Total: -111.93 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.68 Total: 47.69 kcal Total: -61.95 1.68 -60.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127563701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.400 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds