Wall clock time and date at job start Mon Mar 30 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.67526 * 2 1 4 4 C 1.54895 * 110.75217 * 123.22783 * 2 1 3 5 5 C 1.54270 * 104.19449 * 156.25484 * 4 2 1 6 6 C 1.53870 * 106.59922 * 336.39702 * 5 4 2 7 7 H 1.09007 * 110.02912 * 240.71665 * 6 5 4 8 8 N 1.46495 * 110.03453 * 119.33216 * 6 5 4 9 9 C 1.39851 * 120.00133 * 86.45194 * 8 6 5 10 10 C 1.39599 * 119.83741 * 359.72782 * 9 8 6 11 11 C 1.38064 * 120.54497 * 179.71893 * 10 9 8 12 12 C 1.38732 * 120.22102 * 0.55371 * 11 10 9 13 13 N 1.38868 * 120.16580 * 179.74649 * 12 11 10 14 14 C 1.41570 * 119.67695 * 359.72405 * 12 11 10 15 15 C 1.41024 * 120.27025 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99908 * 333.64523 * 15 14 12 17 17 C 1.39888 * 119.99903 * 153.64741 * 15 14 12 18 18 N 1.30899 * 119.99867 * 343.98971 * 17 15 14 19 19 Si 1.86796 * 119.99707 * 163.98826 * 17 15 14 20 20 H 1.48496 * 109.47204 * 89.99987 * 19 17 15 21 21 H 1.48503 * 109.46935 * 210.00111 * 19 17 15 22 22 H 1.48501 * 109.47378 * 329.99611 * 19 17 15 23 23 C 1.38009 * 119.84025 * 179.97438 * 9 8 6 24 24 C 1.54470 * 106.68591 * 0.15020 * 6 5 4 25 25 H 1.08996 * 109.47438 * 300.70622 * 1 2 3 26 26 H 1.09003 * 109.46604 * 60.70596 * 1 2 3 27 27 H 1.08990 * 109.47240 * 180.70281 * 1 2 3 28 28 H 1.08996 * 110.48783 * 274.93792 * 4 2 1 29 29 H 1.09007 * 110.48280 * 37.45180 * 4 2 1 30 30 H 1.09003 * 110.02775 * 95.67690 * 5 4 2 31 31 H 1.08994 * 110.03219 * 217.06008 * 5 4 2 32 32 H 0.97004 * 119.99989 * 266.45172 * 8 6 5 33 33 H 1.07990 * 119.72829 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.89106 * 180.27656 * 11 10 9 35 35 H 0.96999 * 120.00605 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99509 * 359.97313 * 13 12 11 37 37 H 0.97002 * 119.99316 * 180.02562 * 18 17 15 38 38 H 1.08008 * 120.11451 * 0.02691 * 23 9 8 39 39 H 1.08993 * 110.40655 * 264.76308 * 24 6 5 40 40 H 1.09002 * 110.65724 * 142.05487 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0788 -0.7937 1.2116 5 6 3.4931 -1.2255 0.7718 6 6 3.4932 -1.2283 -0.7669 7 1 3.7119 -2.2294 -1.1385 8 7 4.4879 -0.2780 -1.2704 9 6 5.8167 -0.6802 -1.4388 10 6 6.1927 -1.9864 -1.1206 11 6 7.4992 -2.4007 -1.2865 12 6 8.4570 -1.5168 -1.7620 13 7 9.7719 -1.9332 -1.9235 14 6 8.0873 -0.1883 -2.0821 15 6 9.0508 0.7208 -2.5658 16 1 10.0921 0.5909 -2.3102 17 6 8.6579 1.7908 -3.3767 18 7 7.4779 1.7838 -3.9433 19 14 9.8171 3.2297 -3.6509 20 1 10.6646 2.9627 -4.8408 21 1 9.0265 4.4668 -3.8738 22 1 10.6818 3.4034 -2.4562 23 6 6.7510 0.2176 -1.9138 24 6 2.0789 -0.7940 -1.2113 25 1 -0.3634 0.5247 0.8835 26 1 -0.3633 0.5029 -0.8963 27 1 -0.3633 -1.0275 0.0126 28 1 2.1318 -0.1554 2.0935 29 1 1.4559 -1.6660 1.4100 30 1 4.2325 -0.5164 1.1439 31 1 3.7121 -2.2248 1.1477 32 1 4.2249 0.6302 -1.4871 33 1 5.4545 -2.6800 -0.7462 34 1 7.7775 -3.4150 -1.0412 35 1 10.4396 -1.3134 -2.2564 36 1 10.0226 -2.8440 -1.7034 37 1 7.2056 2.5256 -4.5058 38 1 6.4574 1.2287 -2.1548 39 1 1.4575 -1.6674 -1.4082 40 1 2.1321 -0.1557 -2.0933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127563895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:26 Heat of formation + Delta-G solvation = 4.043703 kcal Electronic energy + Delta-G solvation = -19315.495656 eV Core-core repulsion = 16514.453516 eV Total energy + Delta-G solvation = -2801.042139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.79475 -37.45448 -34.53859 -33.41311 -31.73920 -30.06202 -29.34625 -28.15996 -25.90819 -24.67439 -24.36195 -21.22983 -20.09877 -19.88058 -19.23780 -17.09750 -16.09563 -15.66935 -15.38362 -15.01500 -14.65742 -14.32134 -14.06457 -13.44815 -12.85675 -12.59870 -12.43852 -12.32472 -12.08228 -11.80240 -11.55687 -11.27676 -11.17598 -10.95940 -10.87920 -10.80976 -10.53552 -10.42871 -10.38094 -10.23816 -9.80331 -9.67709 -9.25575 -9.01805 -7.70433 -7.18283 -6.58394 -5.48253 -4.03194 2.93487 3.14664 3.18981 3.34026 3.52123 4.05781 4.50068 4.71693 4.79540 4.86438 4.96541 5.45076 5.45969 5.52418 5.64604 5.67458 5.74351 5.89140 5.90851 5.92829 6.01436 6.06278 6.19464 6.25585 6.41694 6.45269 6.50958 6.64171 6.72396 7.16558 7.21319 7.35939 7.53443 7.76301 7.92974 8.04817 8.17311 8.50154 8.81103 8.95355 8.99481 9.04423 9.29640 9.38373 10.40780 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.005294 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.135754 B = 5287.344256 C = 6253.862954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.140 4.140 6 C 0.160 3.840 7 H 0.071 0.929 8 N -0.755 5.755 9 C 0.179 3.821 10 C -0.255 4.255 11 C -0.153 4.153 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.801 5.801 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.201 4.201 24 C -0.127 4.127 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.386 0.614 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.388 0.612 36 H 0.373 0.627 37 H 0.274 0.726 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -2.509 5.402 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.179 4.179 6 C 0.053 3.947 7 H 0.089 0.911 8 N -0.389 5.389 9 C 0.080 3.920 10 C -0.278 4.278 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.091 3.909 15 C -0.497 4.497 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.428 5.428 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.226 4.226 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.219 0.781 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.216 0.784 36 H 0.198 0.802 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.088 0.912 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.143 -2.496 5.297 10.857 hybrid contribution 0.733 0.855 -0.354 1.180 sum -8.410 -1.642 4.943 9.892 Atomic orbital electron populations 1.21759 0.95439 1.01497 1.01279 1.22111 0.94830 0.99422 0.95347 0.90770 1.22404 0.96593 0.99210 0.97324 1.22756 0.96514 1.01405 0.97230 1.21216 0.87450 0.94013 0.92062 0.91065 1.44489 1.05833 1.12693 1.75839 1.17520 0.83331 0.93387 0.97752 1.19629 0.95463 0.95035 1.17716 1.19708 0.93163 0.96865 1.07983 1.17860 0.84832 0.93472 1.05571 1.41805 1.08132 1.13970 1.79295 1.16963 0.92729 0.89084 0.92170 1.19115 0.94758 1.08355 1.27431 0.91182 1.25732 0.95432 0.98645 0.94055 1.69885 1.19688 1.29990 1.23235 0.86461 0.80878 0.80864 0.79275 1.19880 1.20410 1.18803 1.20484 0.92786 0.98857 1.10448 1.22753 0.95947 0.99938 0.97847 0.93008 0.92871 0.92811 0.92281 0.92068 0.90974 0.92240 0.78084 0.89664 0.89892 0.78381 0.80160 0.91518 0.86593 0.91200 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.27 37.16 0.34 -1.03 16 2 C -0.10 -1.15 3.48 -88.63 -0.31 -1.46 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.12 -1.39 6.28 -25.07 -0.16 -1.55 16 5 C -0.14 -2.03 6.59 -25.61 -0.17 -2.20 16 6 C 0.16 2.53 2.89 -66.71 -0.19 2.34 16 7 H 0.07 1.21 6.51 -51.93 -0.34 0.87 16 8 N -0.75 -14.55 5.12 -50.99 -0.26 -14.81 16 9 C 0.18 4.18 6.64 -83.78 -0.56 3.63 16 10 C -0.25 -5.84 9.21 -39.14 -0.36 -6.20 16 11 C -0.15 -3.56 9.86 -39.46 -0.39 -3.95 16 12 C 0.08 2.05 6.79 -83.22 -0.56 1.49 16 13 N -0.89 -18.53 8.98 32.75 0.29 -18.24 16 14 C 0.10 2.57 5.57 -106.66 -0.59 1.98 16 15 C -0.47 -12.37 8.48 -37.91 -0.32 -12.70 16 16 H 0.07 1.77 6.71 -52.48 -0.35 1.42 16 17 C 0.08 1.97 5.16 -17.33 -0.09 1.88 16 18 N -0.80 -21.19 10.97 55.55 0.61 -20.58 16 19 Si 0.90 19.13 29.59 -169.99 -5.03 14.10 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.20 -5.28 8.49 -38.75 -0.33 -5.61 16 24 C -0.13 -1.65 5.89 -24.97 -0.15 -1.79 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.66 8.04 -51.92 -0.42 0.24 16 30 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.39 7.22 8.55 -40.82 -0.35 6.87 16 33 H 0.09 1.78 6.22 -52.49 -0.33 1.46 16 34 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.39 7.93 7.06 -40.82 -0.29 7.64 16 36 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 37 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 38 H 0.12 3.16 6.23 -52.48 -0.33 2.84 16 39 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.07 0.96 7.98 -51.93 -0.41 0.54 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -28.05 317.88 -9.53 -37.58 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -6.10 Total: 22.34 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.84 Total: -25.17 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.64 Total: -53.64 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.05 -9.53 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127563895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.622 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds