Wall clock time and date at job start Mon Mar 30 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.67526 * 2 1 4 4 C 1.54895 * 110.75217 * 123.22783 * 2 1 3 5 5 C 1.54270 * 104.19449 * 156.25484 * 4 2 1 6 6 C 1.53870 * 106.59922 * 336.39702 * 5 4 2 7 7 H 1.09007 * 110.02912 * 240.71665 * 6 5 4 8 8 N 1.46495 * 110.03453 * 119.33216 * 6 5 4 9 9 C 1.39851 * 120.00133 * 86.45194 * 8 6 5 10 10 C 1.39599 * 119.83741 * 359.72782 * 9 8 6 11 11 C 1.38064 * 120.54497 * 179.71893 * 10 9 8 12 12 C 1.38732 * 120.22102 * 0.55371 * 11 10 9 13 13 N 1.38868 * 120.16580 * 179.74649 * 12 11 10 14 14 C 1.41570 * 119.67695 * 359.72405 * 12 11 10 15 15 C 1.41024 * 120.27025 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99908 * 333.64523 * 15 14 12 17 17 C 1.39888 * 119.99903 * 153.64741 * 15 14 12 18 18 N 1.30899 * 119.99867 * 343.98971 * 17 15 14 19 19 Si 1.86796 * 119.99707 * 163.98826 * 17 15 14 20 20 H 1.48496 * 109.47204 * 89.99987 * 19 17 15 21 21 H 1.48503 * 109.46935 * 210.00111 * 19 17 15 22 22 H 1.48501 * 109.47378 * 329.99611 * 19 17 15 23 23 C 1.38009 * 119.84025 * 179.97438 * 9 8 6 24 24 C 1.54470 * 106.68591 * 0.15020 * 6 5 4 25 25 H 1.08996 * 109.47438 * 300.70622 * 1 2 3 26 26 H 1.09003 * 109.46604 * 60.70596 * 1 2 3 27 27 H 1.08990 * 109.47240 * 180.70281 * 1 2 3 28 28 H 1.08996 * 110.48783 * 274.93792 * 4 2 1 29 29 H 1.09007 * 110.48280 * 37.45180 * 4 2 1 30 30 H 1.09003 * 110.02775 * 95.67690 * 5 4 2 31 31 H 1.08994 * 110.03219 * 217.06008 * 5 4 2 32 32 H 0.97004 * 119.99989 * 266.45172 * 8 6 5 33 33 H 1.07990 * 119.72829 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.89106 * 180.27656 * 11 10 9 35 35 H 0.96999 * 120.00605 * 179.97438 * 13 12 11 36 36 H 0.97000 * 119.99509 * 359.97313 * 13 12 11 37 37 H 0.97002 * 119.99316 * 180.02562 * 18 17 15 38 38 H 1.08008 * 120.11451 * 0.02691 * 23 9 8 39 39 H 1.08993 * 110.40655 * 264.76308 * 24 6 5 40 40 H 1.09002 * 110.65724 * 142.05487 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0788 -0.7937 1.2116 5 6 3.4931 -1.2255 0.7718 6 6 3.4932 -1.2283 -0.7669 7 1 3.7119 -2.2294 -1.1385 8 7 4.4879 -0.2780 -1.2704 9 6 5.8167 -0.6802 -1.4388 10 6 6.1927 -1.9864 -1.1206 11 6 7.4992 -2.4007 -1.2865 12 6 8.4570 -1.5168 -1.7620 13 7 9.7719 -1.9332 -1.9235 14 6 8.0873 -0.1883 -2.0821 15 6 9.0508 0.7208 -2.5658 16 1 10.0921 0.5909 -2.3102 17 6 8.6579 1.7908 -3.3767 18 7 7.4779 1.7838 -3.9433 19 14 9.8171 3.2297 -3.6509 20 1 10.6646 2.9627 -4.8408 21 1 9.0265 4.4668 -3.8738 22 1 10.6818 3.4034 -2.4562 23 6 6.7510 0.2176 -1.9138 24 6 2.0789 -0.7940 -1.2113 25 1 -0.3634 0.5247 0.8835 26 1 -0.3633 0.5029 -0.8963 27 1 -0.3633 -1.0275 0.0126 28 1 2.1318 -0.1554 2.0935 29 1 1.4559 -1.6660 1.4100 30 1 4.2325 -0.5164 1.1439 31 1 3.7121 -2.2248 1.1477 32 1 4.2249 0.6302 -1.4871 33 1 5.4545 -2.6800 -0.7462 34 1 7.7775 -3.4150 -1.0412 35 1 10.4396 -1.3134 -2.2564 36 1 10.0226 -2.8440 -1.7034 37 1 7.2056 2.5256 -4.5058 38 1 6.4574 1.2287 -2.1548 39 1 1.4575 -1.6674 -1.4082 40 1 2.1321 -0.1557 -2.0933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127563895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:25 Heat of formation + Delta-G solvation = -11.775583 kcal Electronic energy + Delta-G solvation = -19316.181631 eV Core-core repulsion = 16514.453516 eV Total energy + Delta-G solvation = -2801.728115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18796 -39.05350 -36.10742 -35.30448 -33.24056 -31.38757 -31.12190 -29.44837 -27.53095 -26.48489 -25.49094 -23.04181 -21.73906 -20.92759 -20.65838 -18.90751 -17.84402 -17.27427 -16.91853 -16.48296 -16.35719 -15.66515 -15.39996 -14.51666 -14.37367 -14.20029 -13.90264 -13.79836 -13.53711 -13.20032 -13.18174 -12.83935 -12.78571 -12.65103 -12.16187 -12.09193 -11.87640 -11.70657 -11.56531 -11.42644 -11.31371 -11.27798 -11.06449 -10.91825 -9.36608 -9.12658 -8.49329 -7.26856 -5.99499 1.13440 1.40767 1.50108 1.54760 1.66960 2.27488 2.92152 3.01326 3.71368 3.72787 3.78544 3.98004 4.00729 4.47497 4.49132 4.60821 4.63999 4.69671 4.72472 4.80857 4.90767 4.94355 5.05903 5.12170 5.17418 5.24648 5.33269 5.37256 5.38390 5.41484 5.49831 5.60177 5.69711 5.92441 6.08507 6.19261 6.32172 6.58791 6.98877 7.08768 7.16658 7.30812 7.49526 7.68057 8.51879 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.005294 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.135754 B = 5287.344256 C = 6253.862954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.136 4.136 6 C 0.153 3.847 7 H 0.062 0.938 8 N -0.751 5.751 9 C 0.177 3.823 10 C -0.257 4.257 11 C -0.158 4.158 12 C 0.067 3.933 13 N -0.880 5.880 14 C 0.061 3.939 15 C -0.494 4.494 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.835 5.835 19 Si 0.974 3.026 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.262 1.262 23 C -0.227 4.227 24 C -0.120 4.120 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.386 0.614 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.389 0.611 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.810 -3.074 6.058 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.176 4.176 6 C 0.047 3.953 7 H 0.080 0.920 8 N -0.384 5.384 9 C 0.076 3.924 10 C -0.281 4.281 11 C -0.182 4.182 12 C -0.035 4.035 13 N -0.424 5.424 14 C 0.056 3.944 15 C -0.526 4.526 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.462 5.462 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.252 4.252 24 C -0.158 4.158 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.219 0.781 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.217 0.783 36 H 0.218 0.782 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.114 -3.092 5.968 12.144 hybrid contribution 0.966 0.938 -0.522 1.444 sum -9.148 -2.153 5.446 10.862 Atomic orbital electron populations 1.21719 0.93430 1.02408 1.01942 1.22083 0.96426 0.98476 0.94424 0.91940 1.22377 0.94821 1.00049 0.97485 1.22667 0.97831 1.01109 0.95957 1.21470 0.88109 0.92742 0.93014 0.91993 1.44594 1.05081 1.13362 1.75353 1.17621 0.84630 0.93317 0.96796 1.19924 0.96042 0.95060 1.17074 1.20059 0.93058 0.97923 1.07192 1.18033 0.86489 0.93111 1.05830 1.41675 1.06884 1.14893 1.78903 1.17355 0.93306 0.90495 0.93225 1.19385 0.95009 1.09696 1.28478 0.90862 1.26557 0.97050 1.00877 0.93386 1.69971 1.21447 1.30920 1.23890 0.85339 0.78624 0.77225 0.79233 1.19035 1.19856 1.18552 1.20456 0.93734 0.98624 1.12408 1.22721 0.94259 1.00741 0.98101 0.92042 0.92599 0.91762 0.91636 0.90135 0.93521 0.91665 0.78103 0.87549 0.87232 0.78251 0.78239 0.91115 0.88692 0.89273 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.27 71.98 0.67 -1.59 16 2 C -0.10 -2.03 3.48 -9.50 -0.03 -2.06 16 3 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.33 6.28 31.67 0.20 -2.14 16 5 C -0.14 -3.80 6.59 31.32 0.21 -3.60 16 6 C 0.15 4.71 2.89 45.79 0.13 4.84 16 7 H 0.06 2.03 6.51 -2.38 -0.02 2.02 16 8 N -0.75 -29.38 5.12 -315.23 -1.61 -30.99 16 9 C 0.18 8.44 6.64 38.14 0.25 8.70 16 10 C -0.26 -11.68 9.21 22.56 0.21 -11.47 16 11 C -0.16 -7.24 9.86 22.35 0.22 -7.02 16 12 C 0.07 3.33 6.79 38.97 0.26 3.59 16 13 N -0.88 -36.27 8.98 -50.30 -0.45 -36.72 16 14 C 0.06 3.39 5.57 -21.18 -0.12 3.27 16 15 C -0.49 -26.98 8.48 23.35 0.20 -26.78 16 16 H 0.07 3.79 6.71 -2.91 -0.02 3.77 16 17 C 0.03 1.76 5.16 85.23 0.44 2.20 16 18 N -0.83 -45.52 10.97 21.82 0.24 -45.28 16 19 Si 0.97 39.81 29.59 68.60 2.03 41.84 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 C -0.23 -12.40 8.49 22.81 0.19 -12.20 16 24 C -0.12 -2.93 5.89 31.74 0.19 -2.75 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.44 8.04 -2.38 -0.02 1.42 16 30 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.39 14.90 8.55 -92.71 -0.79 14.11 16 33 H 0.11 4.30 6.22 -2.92 -0.02 4.29 16 34 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.39 15.90 7.06 -92.71 -0.65 15.24 16 36 H 0.39 13.27 8.83 -92.71 -0.82 12.46 16 37 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 38 H 0.10 5.47 6.23 -2.91 -0.02 5.45 16 39 H 0.09 1.85 8.05 -2.39 -0.02 1.84 16 40 H 0.06 1.63 7.98 -2.39 -0.02 1.61 16 Total: -1.00 -61.45 317.88 2.02 -59.43 By element: Atomic # 1 Polarization: 59.93 SS G_CDS: -1.20 Total: 58.73 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 3.02 Total: -47.00 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -1.83 Total: -113.00 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.45 2.02 -59.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127563895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.655 kcal (2) G-P(sol) polarization free energy of solvation -61.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds