Wall clock time and date at job start Mon Mar 30 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.43929 * 2 1 4 4 C 1.54891 * 110.59640 * 237.37753 * 2 1 3 5 5 C 1.54967 * 102.77587 * 203.35035 * 4 2 1 6 6 C 1.54265 * 104.15926 * 37.89626 * 5 4 2 7 7 H 1.08996 * 110.03386 * 95.75361 * 6 5 4 8 8 N 1.46504 * 110.02998 * 217.13796 * 6 5 4 9 9 C 1.39852 * 119.99324 * 272.90594 * 8 6 5 10 10 C 1.39597 * 119.84436 * 0.02562 * 9 8 6 11 11 C 1.38066 * 120.55281 * 179.97438 * 10 9 8 12 12 C 1.38734 * 120.21896 * 359.78253 * 11 10 9 13 13 N 1.38861 * 120.16300 * 180.25773 * 12 11 10 14 14 C 1.41566 * 119.66797 * 0.47160 * 12 11 10 15 15 C 1.41027 * 120.25914 * 179.78768 * 14 12 11 16 16 H 1.07998 * 120.00540 * 333.52601 * 15 14 12 17 17 C 1.39896 * 119.99633 * 153.25429 * 15 14 12 18 18 N 1.30901 * 119.99988 * 343.89010 * 17 15 14 19 19 Si 1.86798 * 120.00049 * 163.89860 * 17 15 14 20 20 H 1.48495 * 109.47329 * 59.99310 * 19 17 15 21 21 H 1.48496 * 109.47058 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46783 * 299.99639 * 19 17 15 23 23 C 1.38014 * 119.83593 * 180.02562 * 9 8 6 24 24 C 1.53878 * 106.63849 * 336.43971 * 6 5 4 25 25 H 1.09003 * 109.47013 * 297.45967 * 1 2 3 26 26 H 1.09001 * 109.46976 * 57.45581 * 1 2 3 27 27 H 1.08995 * 109.47248 * 177.45661 * 1 2 3 28 28 H 1.08996 * 110.76068 * 321.64417 * 4 2 1 29 29 H 1.09003 * 110.74988 * 84.83050 * 4 2 1 30 30 H 1.08996 * 110.48128 * 279.23906 * 5 4 2 31 31 H 1.08998 * 110.52818 * 156.57122 * 5 4 2 32 32 H 0.96994 * 120.00353 * 92.90802 * 8 6 5 33 33 H 1.08004 * 119.72749 * 359.97438 * 10 9 8 34 34 H 1.07995 * 119.88700 * 180.02562 * 11 10 9 35 35 H 0.97005 * 119.99841 * 180.21537 * 13 12 11 36 36 H 0.96994 * 119.99968 * 0.21003 * 13 12 11 37 37 H 0.96994 * 119.99943 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.11485 * 359.97438 * 23 9 8 39 39 H 1.08995 * 110.03204 * 119.26516 * 24 6 5 40 40 H 1.08996 * 110.03310 * 240.64633 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0749 -0.7816 -1.2212 5 6 3.4943 -1.1960 -0.7573 6 6 3.3185 -1.5371 0.7368 7 1 3.1733 -2.6103 0.8602 8 7 4.4945 -1.0999 1.4932 9 6 5.6003 -1.9469 1.6176 10 6 5.5802 -3.2081 1.0193 11 6 6.6640 -4.0559 1.1324 12 6 7.7895 -3.6598 1.8403 13 7 8.8810 -4.5114 1.9488 14 6 7.8178 -2.3851 2.4553 15 6 8.9537 -1.9716 3.1817 16 1 9.6003 -2.7067 3.6376 17 6 9.2460 -0.6092 3.3069 18 7 8.6739 0.2587 2.5114 19 14 10.4529 -0.0288 4.6091 20 1 11.7764 -0.6596 4.3738 21 1 10.5878 1.4482 4.5358 22 1 9.9533 -0.4135 5.9537 23 6 6.7063 -1.5319 2.3313 24 6 2.0699 -0.7774 1.2182 25 1 -0.3633 0.4739 0.9119 26 1 -0.3633 0.5528 -0.8663 27 1 -0.3633 -1.0266 -0.0456 28 1 1.4627 -1.6609 -1.4216 29 1 2.1248 -0.1389 -2.1001 30 1 4.1925 -0.3680 -0.8800 31 1 3.8372 -2.0704 -1.3104 32 1 4.5062 -0.2230 1.9076 33 1 4.7095 -3.5232 0.4634 34 1 6.6370 -5.0290 0.6649 35 1 9.6655 -4.2333 2.4470 36 1 8.8589 -5.3843 1.5265 37 1 8.8769 1.2033 2.5979 38 1 6.7185 -0.5555 2.7924 39 1 1.3184 -1.4819 1.5745 40 1 2.3388 -0.0841 2.0151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127564098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:29 Heat of formation + Delta-G solvation = 4.053769 kcal Electronic energy + Delta-G solvation = -19274.774379 eV Core-core repulsion = 16473.732676 eV Total energy + Delta-G solvation = -2801.041703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.77516 -37.47107 -34.60542 -33.41237 -31.77678 -30.05196 -29.34652 -28.15449 -25.92084 -24.67249 -24.24064 -21.25055 -20.27382 -19.78439 -19.26396 -17.13362 -16.10627 -15.69444 -15.36401 -15.01681 -14.66782 -14.14767 -14.10357 -13.43028 -12.94944 -12.65202 -12.41548 -12.26965 -12.10485 -11.83391 -11.50363 -11.32144 -11.08143 -11.02710 -10.92951 -10.78865 -10.60037 -10.45394 -10.39150 -10.21663 -9.81933 -9.63573 -9.26704 -9.01567 -7.70087 -7.18273 -6.58260 -5.48436 -4.03301 2.95031 3.14119 3.17139 3.34411 3.52158 4.05772 4.47805 4.72130 4.80626 4.86925 4.96328 5.43272 5.45821 5.51091 5.63723 5.66652 5.76795 5.82541 5.91196 5.92814 6.00238 6.06181 6.17554 6.23529 6.42182 6.48210 6.52544 6.61942 6.72582 7.16590 7.21149 7.35746 7.53261 7.76111 7.92677 8.04470 8.17063 8.49985 8.80797 8.95051 8.99048 9.04297 9.29531 9.38267 10.40953 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023857 B = 0.005080 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.384414 B = 5510.497415 C = 6383.251313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.138 4.138 6 C 0.160 3.840 7 H 0.072 0.928 8 N -0.756 5.756 9 C 0.178 3.822 10 C -0.255 4.255 11 C -0.153 4.153 12 C 0.084 3.916 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.466 4.466 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.801 5.801 19 Si 0.901 3.099 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.201 4.201 24 C -0.126 4.126 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.386 0.614 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.388 0.612 36 H 0.374 0.626 37 H 0.275 0.725 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -0.119 -3.390 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.178 4.178 6 C 0.053 3.947 7 H 0.090 0.910 8 N -0.390 5.390 9 C 0.080 3.920 10 C -0.279 4.279 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.091 3.909 15 C -0.498 4.498 16 H 0.088 0.912 17 C -0.138 4.138 18 N -0.428 5.428 19 Si 0.726 3.274 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.225 4.225 24 C -0.165 4.165 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.216 0.784 36 H 0.198 0.802 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.375 0.083 -3.530 10.960 hybrid contribution 0.911 0.470 0.626 1.201 sum -9.464 0.553 -2.904 9.915 Atomic orbital electron populations 1.21804 0.95398 1.01583 1.01237 1.21947 0.94954 0.99360 0.95324 0.90991 1.22556 0.96771 0.99370 0.97038 1.22937 0.96047 1.01622 0.97173 1.21213 0.85124 0.98321 0.90071 0.90952 1.44538 1.14901 1.18420 1.61098 1.17528 0.87274 0.89930 0.97304 1.19634 0.99611 0.95449 1.13159 1.19710 0.94256 0.98524 1.05242 1.17862 0.88645 0.93309 1.01889 1.41804 1.18480 1.18318 1.64594 1.16958 0.92723 0.89233 0.92016 1.19093 1.08736 0.91631 1.30298 0.91198 1.25732 0.96223 0.96862 0.95020 1.69874 1.38132 1.03203 1.31575 0.86502 0.81011 0.77735 0.82115 1.19382 1.20645 1.19180 1.20478 0.91991 1.02184 1.07893 1.22506 0.97215 0.99129 0.97614 0.92921 0.92991 0.92714 0.91780 0.92096 0.91146 0.91841 0.78047 0.89651 0.89883 0.78375 0.80157 0.91453 0.86620 0.91513 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.12 37.16 0.34 -1.01 16 2 C -0.10 -1.10 3.45 -88.96 -0.31 -1.41 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.41 6.33 -24.69 -0.16 -1.57 16 5 C -0.14 -2.07 6.54 -25.03 -0.16 -2.24 16 6 C 0.16 2.55 2.91 -66.81 -0.19 2.35 16 7 H 0.07 1.22 6.46 -51.93 -0.34 0.89 16 8 N -0.76 -14.64 5.22 -51.09 -0.27 -14.91 16 9 C 0.18 4.19 6.64 -83.77 -0.56 3.63 16 10 C -0.25 -5.85 9.21 -39.14 -0.36 -6.21 16 11 C -0.15 -3.57 9.86 -39.46 -0.39 -3.96 16 12 C 0.08 2.06 6.79 -83.23 -0.56 1.50 16 13 N -0.89 -18.55 8.98 32.75 0.29 -18.26 16 14 C 0.10 2.58 5.57 -106.66 -0.59 1.98 16 15 C -0.47 -12.41 8.47 -37.90 -0.32 -12.73 16 16 H 0.07 1.77 6.71 -52.49 -0.35 1.42 16 17 C 0.08 1.98 5.16 -17.33 -0.09 1.89 16 18 N -0.80 -21.21 10.98 55.55 0.61 -20.60 16 19 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.20 -5.28 8.49 -38.75 -0.33 -5.61 16 24 C -0.13 -1.63 6.14 -25.61 -0.16 -1.79 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.39 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.09 1.79 6.21 -52.48 -0.33 1.46 16 34 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.39 7.95 7.06 -40.82 -0.29 7.66 16 36 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 37 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 38 H 0.12 3.16 6.24 -52.49 -0.33 2.83 16 39 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 40 H 0.07 0.89 7.61 -51.93 -0.40 0.49 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -28.10 317.35 -9.51 -37.61 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -6.06 Total: 22.42 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.84 Total: -25.17 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.64 Total: -53.76 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.10 -9.51 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127564098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.668 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds